Location of cyanine-3 on double-stranded DNA: Importance for fluorescence resonance energy transfer studies

Biochemistry

Volumn 39, Issue 21, 2000, Pages 6317-6324

  Norman, David G ^a   Grainger, Richard J ^a,b   Uhrín, Dusan ^b   Lilley, David M J ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ARTICLE; DNA DETERMINATION; DNA STRUCTURE; ENERGY TRANSFER; FLUORESCENCE; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL;

BASE SEQUENCE; CARBOCYANINES; DNA; ENERGY TRANSFER; FLUORESCEIN; FLUORESCENT DYES; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; SPECTROMETRY, FLUORESCENCE;

EID: 0034732989     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi992944a     Document Type: Article

References (33)

1. Murchie, A. I. H., Clegg, R. M., von Kitzing, E., Duckett, D. R., Diekmann, S., and Lilley, D. M. J. (1989) Nature 341, 763-766.
2. Clegg, R. M., Murchie, A. I. H., Zechel, A., Carlberg, C., Diekmann, S., and Lilley, D. M. J. (1992) Biochemistry 31, 4846-4856.
3. Eis, P. S., and Millar, D. P. (1993) Biochemistry 32, 13852-13860.
4. Clegg, R. M., Murchie, A. I. H., Zechel, A., and Lilley, D. M. J. (1994) Biophys. J. 66, 99-109.
5. Gohlke, C., Murchie, A. I. H., Lilley, D. M. J., and Clegg, R. M. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 11660-11664.
6. Mergny, J. L., Boutorine, A. S., Garestier, T., Belloc, F., Rougee, M., Bulychev, N. V., Koshkin, A. A., Bourson, J., Lebedev, A. V., Valeur, B., Thuong, N. T., and Helene, C. (1994) Nucleic Acids Res. 22, 920-928.
7. Jares-Erijman, E. A., and Jovin, T. M. (1996) J. Mol. Biol. 257, 597-617.
8. Yang, M. S., and Millar, D. P. (1996) Biochemistry 35, 7959-7967.
9. Stühmeier, F., Welch, J. B., Murchie, A. I. H., Lilley, D. M. J., and Clegg, R. M. (1997) Biochemistry 36, 13530-13538.
10. Mergny, J. L. (1999) Biochemistry 38, 1573-1581.
11. Tuschl, T., Gohlke, C., Jovin, T. M., Westhof, E., and Eckstein, F. (1994) Science 266, 785-789.
12. Bassi, G. S., Murchie, A. I. H., Walter, F., Clegg, R. M., and Lilley, D. M. J. (1997) EMBO J. 16, 7481-7489.
13. Murchie, A. I. H., Thomson, J. B., Walter, F., and Lilley, D. M. J. (1998) Mol. Cell 1, 873-881.
14. Walter, F., Murchie, A. I. H., Duckett, D. R., and Lilley, D. M. J. (1998) RNA 4, 719-728.
15. Walter, F., Murchie, A. I. H., Thomson, J. B., and Lilley, D. M. J. (1998) Biochemistry 37, 14195-14203.
16. Walter, F., Murchie, A. I. H., and Lilley, D. M. J. (1998) Biochemistry 37, 17629-17636.
17. Walter, N. G., Hampel, K. J., Brown, K. M., and Burke, J. M. (1998) EMBO J. 17, 2378-2391.
18. Grainger, R. J., Norman, D. G., and Lilley, D. M. J. (1999) J. Mol. Biol. 288, 585-594.
19. Förster, T. (1948) Ann. Phys. 2, 55-75.
20. Beaucage, S. L., and Caruthers, M. H. (1981) Tetrahedron Lett. 22, 1859-1862.
21. Clegg, R. M. (1992) Methods Enzymol. 211, 353-388.
22. Marion, D., Ikura, M., Tschudin, R., and Bax, A. (1989) J. Magn. Reson. 85, 393-399.
23. Rance, M. (1987) J. Magn. Reson. 74, 557-564.
24. Jeener, J., Meier, B. H., Bachmann, P., and Ernst, R. R. (1979) J. Chem. Phys. 71, 4546-4553.
25. Rance, M., Sorensen, O. W., Bodenhausen, G., Wagner, G., Ernst, R. R., and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 117, 479-485.
26. Rucker, S. P., and Shaka, A. J. (1989) Mol. Phys. 68, 509-517.
27. Piotto, M., Saudek, V., and Sklenar, V. (1992) J. Biomol. NMR 2, 661-665.
28. Brünger, A. T. (1992) X-PLOR (version 3.1) manual, Yale University Press, New Haven, CT.
29. Reichardt, C., Engel, H.-D., Allmann, R., Kucharczyk, D., and Krestel, M. (1990) Chem. Ber. 123, 565-581.
30. Kleywegt, G. J. (1995) CCP4/ESF-EACBM Newsletter on Protein Crystallography 31, 45-50.
31. Nilges, M., Habazettl, J., Brünger, A. T., and Holak, T. A. (1991) J. Mol. Biol. 219, 499-510.
32. Clegg, R. M., Murchie, A. I. H., Zechel, A., and Lilley, D. M. J. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 2994-2998.
33. James, T. L., Gochin, M., Kerwood, D. J., Schmitz, U., and Thomas, P. D. (1991) Computational aspects of the study of biological macromolecules by NMR (Hoch, J. C., Ed.) Plenum Press, New York.