Molecular biology of the chromo domain: An ancient chromatin module comes of age

Gene

Volumn 275, Issue 1, 2001, Pages 19-29

  Eissenberg, Joel C ^a  

^a SAINT LOUIS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Chromo acetyltransferase; Chromo helicase; Chromo integrase; Chromo methylase; OB fold; Transcriptional regulation

Indexed keywords

CHROMOSOME PROTEIN;

ARCHAEBACTERIUM; CHROMATIN; CHROMOSOME STRUCTURE; EUKARYOTE; METABOLISM; MOLECULAR BIOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN MOTIF; PROTEIN STRUCTURE; REVIEW; STRUCTURE ACTIVITY RELATION;

AMINO ACID SEQUENCE; ANIMALS; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA HELICASES; DNA-BINDING PROTEINS; DROSOPHILA PROTEINS; EVOLUTION, MOLECULAR; FUNGAL PROTEINS; GENE EXPRESSION REGULATION; HUMANS; INSECT PROTEINS; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS;

EID: 0035812294     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(01)00628-X     Document Type: Review

References (93)

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2. The chromo shadow domain, a second chromo domain in heterochromatin-binding protein 1, HP1
3. Chromodomains are protein-RNA interaction modules
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12. Conserved plant genes with similarity to mammalian de novo DNA methyltransferases
13. Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: A model for viral DNA binding
14. Dimerisation of a chromo shadow domain and distinctions from the chromodomain as revealed by structural analysis
15. Parental expression of the chromodomain protein Pdd1p is required for completion of programmed DNA elimination and nuclear differentiation
16. A mammalian DNA-binding protein that contains a chromodomain and an SNF2/SWI2-like helicase domain
17. The fission yeast chromo domain encoding gene chp1+ is required for chromosome segregation and shows a genetic interaction with alpha-tubulin
18. Solution structure of the DNA-binding protein Sac7d from the hyperthermophile Sulfolobus acidocaldarius
19. The HP1 protein family: Getting a grip on chromatin
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21. The heterochromatin-associated protein HP-1 is an essential protein in Drosophila with dosage-dependent effects on position-effect variegation
22. Mutations in the fission yeast silencing factors clr4+ and rik1+ disrupt localization of the chromo domain protein Swi6p and impair centromere function
23. The heterochromatin protein 1 prevents telomere fusions in Drosophila
24. Characterization of the retinoblastoma binding proteins RBP1 and RBP2
25. Polycomb and polyhomeotic are constituents of a multimeric protein complex in chromatin of Drosphila melanogaster
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27. Molecular characterization of the male-specific lethal-3 gene and investigations of the regulation of dosage compensation in Drosophila
28. A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis
29. mof, a putative acetyl transferase gene related to the Tip60 and MOZ human gene and to the SAS genes of yeast, is required for dosage compensation in Drosophila
30. An HPI-like protein is missing from transcriptionally silent micronuclei of Tetrahymena
31. The chromo and SET domains of the Clr4 protein are essential for silencing in fission yeast
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33. Distribution patterns of HP1, a heterochromatin-associated nonhistone chromosomal protein of Drosophila
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36. Mammalian chromodomain proteins: Their role in genome organisation and expression
37. DMi-2, a hunchback-interacting protein that functions in Polycomb repression
38. CHD1 interacts with SSRP1 and depends on both its chromo domain and its ATPase/helicase-like domain for proper association with chromatin
39. The chromo superfamily - New members, duplication of the chromo domain and possible role in delivering transcription regulators to chromatin
40. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
41. Molecular determinants for targeting heterochromatin protein 1-mediated gene silencing: Direct chromoshadow domain-KAP-1 corepressor interaction is essential
42. Chromatin components as part of a putative transcriptional repressing complex
43. A gene complex controlling segmentation in Drosophila
44. CHROMOMETHYLASE3 is required for maintenance of CpXpG methylation
45. Switching gene swi6, involved in repression of silent mating-type loci in fission yeast, encodes a homologue of chromatin-associated proteins from Drosophila and mammals
46. Heterochromatin protein 1 is required for the normal expression of two heterochromatin genes in Drosophila
47. Dosage compensation: RoX marks the spot
48. Characterization of the minimal DNA-binding domain of the HIV integrase protein
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50. Pdd1p, a novel chromodomain-containing protein, links heterochromatin assembly and DNA elimination in Tetrahymena
51. Modular evolution of the integrase domain in the Ty3/gypsy class of LTR retrotransposons
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53. Analysis of the functional role of the Polycomb chromo domain in Drosophila melanogaster
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55. HP1 associates with euchromatin and heterochromatin in mammalian nuclei and chromosomes
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59. Interaction with members of the heterochromatin protein 1 (HP1) family and histone deacetylation are differentially involved in transcriptional silencing by members of the TIF1 family
60. A novel chromodomain protein, Pdd3p, associates with internal eliminated sequences during macronuclear development in Tetrahymena thermophila
61. Imprinting a determined state into the chromatin of Drosophila
62. The polycomb protein shares a homologous domain with a heterochromatin associated protein of Drosophila
63. A domain shared by the Polycomb group proteins Scm and ph mediates heterotypic and homotypic interactions
64. Functional analysis of the chromo domain of HP1
65. In vivo assay for protein-protein interactions using Drosophila chromosomes
66. Overlapping domains of the heterochromatin associated protein HP1 mediate nuclear localization and heterochromatin binding
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68. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
69. The hyperthermophile chromosomal protein Sac7d sharply kinks DNA
70. Ring1A is a transcriptional repressor that interacts with the Polycomb-M33 protein and is expressed at rhombomere boundaries in the mouse hindbrain
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73. ESA1 is a histone acetyltransferase that is essential for growth in yeast
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76. The hinge and chromo shadow domain impart distinct targeting of HP1-like proteins
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78. Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila
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81. The language of covalent histone modifications
82. Long-range nucleosome ordering is associated with gene silencing in Drosophila melanogaster pericentric heterochromatin
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84. The chromo domain protein Chd1p from budding yeast is an ATP-dependent chromatin-remodeling factor
85. The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes
86. Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei
87. Rhino is a female sterile, chromobox-containing gene required for proper dorsal/ventral patterning and chromatin condensation in the egg
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90. Characterization of the CHD family of proteins
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92. Heterochromatin protein 1 binds to nucleosomes and DNA in vitro
93. In vivo binding pattern of a trans-regulator of homoeotic genes in Drosophila melanogaster