-
2
-
-
0022897983
-
A nonlinear measure of subalignment similarity and its significance levels
-
Altschul, S.F. and Erickson, B.W. (1986) A nonlinear measure of subalignment similarity and its significance levels. Bull. Math. Biol., 48, 617-632.
-
(1986)
Bull. Math. Biol.
, vol.48
, pp. 617-632
-
-
Altschul, S.F.1
Erickson, B.W.2
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.5
-
4
-
-
0022474446
-
Maximum likelihood alignment of DNA sequences
-
Bishop, M.J. and Thompson, E.A. (1986) Maximum likelihood alignment of DNA sequences. J. Mol. Biol., 190, 159-165.
-
(1986)
J. Mol. Biol.
, vol.190
, pp. 159-165
-
-
Bishop, M.J.1
Thompson, E.A.2
-
5
-
-
0031850192
-
Comparative analysis of seven multiple protein sequence alignment servers: Clues to enhance reliability of predictions
-
Briffeuil, P., Baudoux, G., Lambert, C., De Bolle, X., Vinals, C., Feytmans, E. and Depiereux, E. (1998) Comparative analysis of seven multiple protein sequence alignment servers: clues to enhance reliability of predictions. Bioinformatics, 14, 357-366.
-
(1998)
Bioinformatics
, vol.14
, pp. 357-366
-
-
Briffeuil, P.1
Baudoux, G.2
Lambert, C.3
De Bolle, X.4
Vinals, C.5
Feytmans, E.6
Depiereux, E.7
-
6
-
-
0032512801
-
A symmetric-iterated multiple alignment of protein sequences
-
Brocchieri, L. and Karlin, S. (1998) A symmetric-iterated multiple alignment of protein sequences. J. Mol. Biol., 276, 249-264.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 249-264
-
-
Brocchieri, L.1
Karlin, S.2
-
7
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet, F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10890.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
8
-
-
0026668613
-
Match-Box: A fundamentally new algorithm for the simultaneous alignment of several protein sequences
-
Depiereux, E. and Feytmans, E. (1992) Match-Box: a fundamentally new algorithm for the simultaneous alignment of several protein sequences. Comput. Applic. Biosci., 8, 501-509.
-
(1992)
Comput. Applic. Biosci.
, vol.8
, pp. 501-509
-
-
Depiereux, E.1
Feytmans, E.2
-
9
-
-
0030996742
-
Match-boxserver: A multiple sequence alignment tool placing emphasis on reliability
-
Depiereux,E., Baudoux,G., Briffeuil,P., Reginster,I., De Boll,X., Vinals,C. and Feytmans,E. (1997) Match-Boxserver: a multiple sequence alignment tool placing emphasis on reliability. Comput. Applic. Biosci., 13, 249-256.
-
(1997)
Comput. Applic. Biosci.
, vol.13
, pp. 249-256
-
-
Depiereux, E.1
Baudoux, G.2
Briffeuil, P.3
Reginster, I.4
De Boll, X.5
Vinals, C.6
Feytmans, E.7
-
10
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10919.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
11
-
-
0028304908
-
On global sequence alignment
-
Huang, X. (1994) On global sequence alignment. Comput. Appl. Biosci. 10, 227-235.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 227-235
-
-
Huang, X.1
-
12
-
-
0029935769
-
Evolutionary conservation of RecA genes in relation to protein structure and function
-
Karlin, S. and Brocchieri, L. (1996) Evolutionary conservation of RecA genes in relation to protein structure and function. J. Bacteriol., 178, 1881-1894.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1881-1894
-
-
Karlin, S.1
Brocchieri, L.2
-
13
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
-
Lawrence, C.E., Altschul, S.F., Boguski, M.S., Lin, J.S., Neuwald, A.F. and Wootton, J.C. (1993) Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment. Science, 262, 208-213.
-
(1993)
Science
, vol.262
, pp. 208-213
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Lin, J.S.4
Neuwald, A.F.5
Wootton, J.C.6
-
14
-
-
0032892093
-
Exact solutions for the segment-to-segment multiple alignment problem
-
Lenhof, H.-P., Morgenstern, B. and Reinert, K. (1999) Exact solutions for the segment-to-segment multiple alignment problem. Bioinformatics, 15, 203-210.
-
(1999)
Bioinformatics
, vol.15
, pp. 203-210
-
-
Lenhof, H.-P.1
Morgenstern, B.2
Reinert, K.3
-
15
-
-
0028341506
-
Comparative analysis of multiple protein-sequence alignment methods
-
McClure, M.A., Vasi, T.K. and Fitch, W.M. (1994) Comparative analysis of multiple protein-sequence alignment methods. Mol. Biol. Evol., 11, 571-592.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 571-592
-
-
McClure, M.A.1
Vasi, T.K.2
Fitch, W.M.3
-
16
-
-
0029861894
-
Multiple DNA and protein sequence alignment based on segment-to-segment comparison
-
Morgenstern, B., Dress, A. and Werner, T. (1996) Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Proc. Natl Acad. Sci. USA, 93, 12098-12103.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 12098-12103
-
-
Morgenstern, B.1
Dress, A.2
Werner, T.3
-
17
-
-
0031854952
-
DIALIGN: Finding local similarities by multiple sequence alignment
-
Morgenstern, B., Frech, K., Dress, A. and Werner, T. (1998a) DIALIGN: Finding local similarities by multiple sequence alignment. Bioinformatics, 14, 290-294.
-
(1998)
Bioinformatics
, vol.14
, pp. 290-294
-
-
Morgenstern, B.1
Frech, K.2
Dress, A.3
Werner, T.4
-
18
-
-
0031604259
-
Segment-based scores for pairwise and multiple sequence alignments
-
Glasgow, J., Littlejohn, T., Major, F., Lathrop, R., Sankoff, D. and Sensen, C. (eds). AAAI Press, Menlo Park, CA.
-
Morgenstern, B., Atchley, W.R., Hahn, K. and Dress, A. (1998b) Segment-based scores for pairwise and multiple sequence alignments. In Glasgow, J., Littlejohn, T., Major, F., Lathrop, R., Sankoff, D. and Sensen, C. (eds), Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA. pp. 115-121.
-
(1998)
Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology
, pp. 115-121
-
-
Morgenstern, B.1
Atchley, W.R.2
Hahn, K.3
Dress, A.4
-
19
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S. and Wunsch, C. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.2
-
20
-
-
0028270992
-
Detecting patterns in protein sequences
-
Neuwald, A.F. and Green, P. (1994) Detecting patterns in protein sequences. J. Mol. Biol., 239, 698-712.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 698-712
-
-
Neuwald, A.F.1
Green, P.2
-
21
-
-
0029872694
-
SAGA: Sequence alignment by genetic algorithm
-
Notredame, C. and Higgins, D.H. (1996) SAGA: sequence alignment by genetic algorithm. Nucleic Acids Res., 24, 1515-1524.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1515-1524
-
-
Notredame, C.1
Higgins, D.H.2
-
22
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
23
-
-
0030697670
-
A branch-and-cut algorithm for multiple sequence alignment
-
Reinert, K., Lenhof, H.-P., Mutzel, P., Mehlhorn, K. and Kececioglu, J.D. (1997) A branch-and-cut algorithm for multiple sequence alignment. In Proceedings of the First Annual International Conference on Computational Molecular Biology (RECOMB '97), pp. 241-249.
-
(1997)
Proceedings of the First Annual International Conference on Computational Molecular Biology (RECOMB '97)
, pp. 241-249
-
-
Reinert, K.1
Lenhof, H.-P.2
Mutzel, P.3
Mehlhorn, K.4
Kececioglu, J.D.5
-
24
-
-
0026100921
-
A workbench for multiple alignment construction and analysis
-
Schuler, G.D., Altschul, S.F. and Lipman, D.J. (1991)A workbench for multiple alignment construction and analysis. Proteins Struct. Fund. Genet., 9, 180-190.
-
(1991)
Proteins Struct. Fund. Genet.
, vol.9
, pp. 180-190
-
-
Schuler, G.D.1
Altschul, S.F.2
Lipman, D.J.3
-
25
-
-
40849099796
-
Comparison of biosequences
-
Smith, T. and Waterman, M. (1981) Comparison of biosequences. Adv. Appl. Math., 2, 482-489.
-
(1981)
Adv. Appl. Math.
, vol.2
, pp. 482-489
-
-
Smith, T.1
Waterman, M.2
-
26
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related protein sequences
-
Smith, R.F. and Smith,T.F. (1990) Automatic generation of primary sequence patterns from sets of related protein sequences. Proc. Natl Acad. Sci. USA, 87, 118-122.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 118-122
-
-
Smith, R.F.1
-
27
-
-
0345676554
-
Multiple sequence alignment with the divide-and-conquer method
-
Stoye, J. (1998) Multiple sequence alignment with the divide-and-conquer method. Gene, 211, GC45-GC56.
-
(1998)
Gene
, vol.211
-
-
Stoye, J.1
-
28
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
29
-
-
0026528734
-
Inching toward reality: An improved likelihood model of sequence evolution
-
Thorne, J.L., Kishino, H. and Felsenstein, J. (1992) Inching toward reality: an improved likelihood model of sequence evolution. J. Mol. Evol., 34, 3-16.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 3-16
-
-
Thorne, J.L.1
Kishino, H.2
Felsenstein, J.3
-
30
-
-
0029028454
-
Estimation and reliability of molecular sequence alignments
-
Thorne, J.L. and Churchill, G.A. (1995) Estimation and reliability of molecular sequence alignments. Biometrics, 51, 100-113.
-
(1995)
Biometrics
, vol.51
, pp. 100-113
-
-
Thorne, J.L.1
Churchill, G.A.2
-
31
-
-
0029884395
-
A general method for fast multiple sequence alignment
-
Tönges, U., Perrey, S.W., Stoye, J. and Dress, A. (1996) A general method for fast multiple sequence alignment. Gene, 172, GC33-GC41.
-
(1996)
Gene
, vol.172
-
-
Tönges, U.1
Perrey, S.W.2
Stoye, J.3
Dress, A.4
-
32
-
-
0023057161
-
Multiple sequence alignment by consensus
-
Waterman, M.S. (1986) Multiple sequence alignment by consensus. Nucleic Acids Res., 14, 9095-9102.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 9095-9102
-
-
Waterman, M.S.1
-
33
-
-
0028505427
-
Chainign multiple-alignment blocks
-
Zhang, Z., Raghavachari, B., Hardison, R.C. and Miller, W. (1994) Chainign multiple-alignment blocks. J. Comp. Biol., 1, 217-226.
-
(1994)
J. Comp. Biol.
, vol.1
, pp. 217-226
-
-
Zhang, Z.1
Raghavachari, B.2
Hardison, R.C.3
Miller, W.4
-
34
-
-
0031874740
-
Bayesian adaptive sequence alignment algorithms
-
Zhu, J., Lin, J.S. and Lawrence, C.E. (1998) Bayesian adaptive sequence alignment algorithms. Bioinformatics, 14, 25-39.
-
(1998)
Bioinformatics
, vol.14
, pp. 25-39
-
-
Zhu, J.1
Lin, J.S.2
Lawrence, C.E.3
|