메뉴 건너뛰기




Volumn 299, Issue 4, 2000, Pages 907-930

A DNA structural atlas for Escherichia coli

Author keywords

Plectonemically supercoiled DNA; Promoter structural profile; Sequence dependent DNA structure; Whole genome analysis

Indexed keywords

BACTERIAL DNA; CURVED DNA; DNA DIRECTED DNA POLYMERASE BETA; RIBOSOME RNA;

EID: 0034674176     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3787     Document Type: Article
Times cited : (181)

References (120)
  • 1
    • 0023660681 scopus 로고
    • Topological unwinding of strong and weak promoters by RNA polymerase. A comparison between the lac wild-type and the UV5 sites of Escherichia coli
    • (1987) J. Mol. Biol. , vol.195 , pp. 795-808
    • Amouyal, M.1    Buc, H.2
  • 30
    • 0000776061 scopus 로고
    • Bacterial sigma factors
    • Transcriptional Regulation (McKnight, S. and Yamamoto, Y., eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • (1992) , pp. 129-176
    • Gross, C.A.1    Lonetto, M.2    Losick, R.3
  • 34
    • 0000073165 scopus 로고    scopus 로고
    • Regulation of gene expression during entry into stationary phase
    • Escherichia coli and Salmonella - Cellular and Molecular Biology (Neidhardt, F., ed.), 2nd edit., ASM Press, Washington, DC
    • (1996) , pp. 1497-1512
    • Hengge-Aronis, R.1
  • 35
    • 0029863159 scopus 로고    scopus 로고
    • Surveying a supercoil domain by using the γδ resolution system in Salmonella typhimurium
    • (1996) J. Bacteriol. , vol.178 , pp. 2825-2835
    • Higgins, N.P.1
  • 37
    • 0000384235 scopus 로고    scopus 로고
    • Features of the chromosomal terminus region
    • Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (Neidhardt, F. C., ed.), 2nd edit., American Society for Microbiology, Washington, DC
    • (1996) , pp. 1602-1614
    • Hill, T.M.1
  • 38
    • 0033396450 scopus 로고    scopus 로고
    • Large genomic sequence repetitions in bacteria: Lessons from rRNA operons and Rhs elements
    • (1999) Res. Microbiol. , vol.150 , pp. 665-674
    • Hill, C.W.1
  • 40
    • 0030909920 scopus 로고    scopus 로고
    • The bacterial nucleoid visualized by fluorescence microscopy of cells lysed within agarose: Comparison of Escherichia coli and spirochetes of the genus Borrelia
    • (1997) J. Bacteriol. , vol.179 , pp. 2228-2237
    • Hinnebusch, B.J.1    Bendich, A.J.2
  • 44
    • 0027318463 scopus 로고
    • Sequence-dependent DNA structure: The role of base stacking interactions
    • (1993) J. Mol. Biol. , vol.230 , pp. 1025-1054
    • Hunter, C.A.1
  • 47
    • 0029026719 scopus 로고
    • Poly (dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure
    • (1995) EMBO J. , vol.14 , pp. 2570-2579
    • Iyer, V.1    Struhl, K.2
  • 48
    • 0030908533 scopus 로고    scopus 로고
    • The Escherichia coli histone-like protein HU affects DNA initiation, chromosome partitioning via MukB, and cell division via MinCDE
    • (1997) J. Bacteriol. , vol.179 , pp. 3494-3499
    • Jaffe, A.1    Vinella, D.2    D'Ari, R.3
  • 50
    • 0034086773 scopus 로고    scopus 로고
    • Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation
    • In the press
    • (2000) Bioinformatics
    • Jensen, L.1    Knudsen, S.2
  • 58
    • 0026354983 scopus 로고
    • DNase I-induced DNA conformation: 2 Å structure of a DNase I-octamer complex
    • (1991) J. Mol. Biol. , vol.222 , pp. 645-667
    • Lahm, A.1    Suck, D.2
  • 66
    • 0027467896 scopus 로고
    • Anchoring of DNA to the bacterial cytoplasmic membrane through cotranscriptional synthesis of polypeptides encoding membrane proteins or proteins for export: A mechanism of plasmid hypernegative supercoiling in mutants deficient in DNA topoisomerase I
    • (1993) J. Bacteriol. , vol.175 , pp. 1645-1655
    • Lynch, A.S.1    Wang, J.C.2
  • 70
    • 0023651364 scopus 로고
    • Random cloning of bent DNA segments from Escherichia coli chromosome and primary characterization of their structures
    • (1987) Nucl Acids Res. , vol.15 , pp. 6827-6841
    • Mizuno, T.1
  • 84
    • 0001436751 scopus 로고    scopus 로고
    • The nucleoid
    • Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd edit., American Society for Microbiology, Washington, DC
    • (1996) , pp. 158-166
    • Pettijohn, D.E.1
  • 88
  • 100
    • 0026787850 scopus 로고
    • Analysis of DNA structure in vivo using psoralen photobinding: Measurement of supercoiling, topological domains, and DNA-protein interactions
    • (1992) Methods Enzymol. , vol.212 , pp. 319-335
    • Sinden, R.R.1    Ussery, D.W.2
  • 115
    • 0002001025 scopus 로고
    • DNA structure: Implications for chromatin structure and function
    • Chromatin Structure and Gene Expression (Elgin, S. C. R., ed.), IRL Press, Oxford
    • (1995) , pp. 27-48
    • Wolffe, A.P.1    Drew, H.R.2
  • 119
    • 0017690690 scopus 로고
    • Proof without prejudice: Use of the Kolmogorov-Smirnov test for the analysis of histograms from flow systems and other sources
    • (1977) J. Histochem. Cytochem. , vol.25 , pp. 935-941
    • Young, I.T.1
  • 120
    • 0030297549 scopus 로고    scopus 로고
    • A specialized nucleosome modulates transcription factor access to a C. glabrata metal responsive promoter
    • (1996) Cell , vol.87 , pp. 459-470
    • Zhu, Z.1    Thiele, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.