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Volumn 302, Issue 2, 2000, Pages 339-358

A chemical phylogeny of group I introns based upon interference mapping of a bacterial ribozyme

Author keywords

Catalytic metal ions; Chemical phylogeny; Guanosine cofactor; Modification interference; Substrate helix

Indexed keywords

ADENOSINE DERIVATIVE; GUANOSINE; GUANOSINE DERIVATIVE; LIGAND; NUCLEOTIDE; NUCLEOTIDE DERIVATIVE; PURINE; RIBOZYME; TRANSFER RNA;

EID: 0034665747     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.4056     Document Type: Article
Times cited : (43)

References (86)
  • 1
    • 0032707136 scopus 로고    scopus 로고
    • Thiophilic metal ion rescue of phosphorothioate interference within the Tetrahymena ribozyme P4-P6 domain
    • (1999) RNA , vol.5 , pp. 1399-1407
    • Basu, S.1    Strobel, S.2
  • 5
    • 0026347806 scopus 로고
    • Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: Evidence for ribozyme specific interactions with 2' OH groups
    • (1991) Biochemistry , vol.30 , pp. 10632-10640
    • Bevilacqua, P.C.1    Turner, D.H.2
  • 6
    • 0032571245 scopus 로고    scopus 로고
    • Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates
    • (1998) J. Mol. Biol. , vol.277 , pp. 363-377
    • Brautigam, C.A.1    Steitz, T.A.2
  • 9
    • 0023364038 scopus 로고
    • The chemistry of self-splicing RNA and RNA enzymes
    • (1987) Science , vol.236 , pp. 1532-1539
    • Cech, T.R.1
  • 11
    • 0019856947 scopus 로고
    • In vitro splicing of the ribosomal RNA precursor of Tetrahymena: Involvement of a guanosine nucleotide in the excision of the intervening sequence
    • (1981) Cell , vol.27 , pp. 487-496
    • Cech, T.R.1    Zaug, A.J.2    Grabowski, P.J.3
  • 15
    • 0027247579 scopus 로고
    • Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena
    • (1993) Biochemistry , vol.32 , pp. 4475-4480
    • Christian, E.L.1    Yarus, M.2
  • 21
    • 0024432780 scopus 로고
    • A conserved base-pair within helix P4 of the Tetrahymena ribozyme helps to form the tertiary structure required for self-splicing
    • (1989) EMBO J. , vol.8 , pp. 3391-3399
    • Flor, P.1    Flanegan, J.2    Cech, T.3
  • 22
    • 0027295270 scopus 로고
    • Modification interference approach to detect ribose moieties important for the optimal activity of a ribozyme
    • (1993) Nucl. Acids Res. , vol.21 , pp. 21-26
    • Gaur, R.1    Krupp, G.2
  • 27
    • 0024283277 scopus 로고
    • DNA and RNA sequence determination based on phosphorothioate chemistry
    • (1988) Science , vol.240 , pp. 1520-1522
    • Gish, G.1    Eckstein, F.2
  • 29
    • 0026466830 scopus 로고
    • Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
    • (1992) Nucl. Acids Res. , vol.20 , pp. 5785-5795
    • Gutell, R.1
  • 32
    • 0029286551 scopus 로고
    • Identification of phosphates involved in catalysis by the ribozyme RNase P RNA
    • (1995) RNA , vol.1 , pp. 210-218
    • Harris, M.E.1    Pace, N.R.2
  • 35
    • 0033054042 scopus 로고    scopus 로고
    • RNA Secondary structure prediction based on free energy and phylogenetic analysis
    • (1999) J. Mol. Biol. , vol.289 , pp. 935-947
    • Juan, V.1
  • 36
    • 0031020032 scopus 로고    scopus 로고
    • Complete identification of nonbridging phosphate oxygens involved in hammerhead cleavage
    • (1997) RNA , vol.3 , pp. 132-140
    • Knoll, R.1    Bald, R.2    Furste, J.P.3
  • 39
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • (1990) J. Mol. Biol. , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 41
    • 0026680843 scopus 로고
    • Site-specific modification of pre-mRNA: The 2'-hydroxyl groups at the splice sites
    • (1992) Science , vol.256 , pp. 992-997
    • Moore, M.J.1    Sharp, P.A.2
  • 47
    • 0033544723 scopus 로고    scopus 로고
    • The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA
    • (1999) J. Mol. Biol. , vol.294 , pp. 955-965
    • Pan, J.1    Woodson, S.2
  • 48
    • 0033980890 scopus 로고    scopus 로고
    • Comparative sequence analysis and patterns of covariation in RNA secondary structure
    • (2000) Genetics , vol.154 , pp. 909-921
    • Parsch, J.1
  • 50
    • 0028037302 scopus 로고
    • Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix
    • (1994) Nature , vol.372 , pp. 111-113
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 51
    • 0027183545 scopus 로고
    • Ribozymes: A distinct class of metalloenzymes
    • (1993) Science , vol.261 , pp. 709-714
    • Pyle, A.M.1
  • 52
    • 0026427239 scopus 로고
    • Ribozyme recognition of RNA by tertiary interactions with specific ribose 2'-OH groups
    • (1991) Nature , vol.350 , pp. 628-631
    • Pyle, A.M.1    Cech, T.R.2
  • 61
  • 64
    • 0007981467 scopus 로고    scopus 로고
    • Ribozymes: Enzymology
    • Prebiotic Chemistry, Molecular Fossils, Nucleosides, and RNA (Soll, D., Nishimura, S. and Moore, P., eds) Elsevier Science Ltd., Oxford, England
    • (1999) , pp. 149-168
    • Strauss-Soukup, J.1    Strobel, S.2
  • 66
    • 0027767532 scopus 로고
    • Tertiary interactions with the internal guide sequence mediate docking of the P1 helix into the catalytic core of the Tetrahymena ribozyme
    • (1993) Biochemistry , vol.32 , pp. 13593-13604
    • Strobel, S.A.1    Cech, T.R.2
  • 68
    • 0028955347 scopus 로고
    • Minor groove recognition of the conserved G.U pair at the Tetrahymena ribozyme reaction site
    • (1995) Science , vol.267 , pp. 675-679
    • Strobel, S.A.1    Cech, T.R.2
  • 76
    • 0029805902 scopus 로고    scopus 로고
    • Activity and thermostability of the small self-splicing group I intron in the pre-tRNA(lle) of the purple bacterium Azoarcus
    • (1996) RNA , vol.2 , pp. 74-83
    • Tanner, M.A.1    Cech, T.R.2
  • 82
    • 0026517751 scopus 로고
    • Tertiary structure around the guanosine-binding site of the Tetrahymena ribozyme
    • (1992) Science , vol.256 , pp. 526-529
    • Wang, J.-F.1    Cech, T.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.