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Volumn 3, Issue 12, 1996, Pages 993-1009

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: A complete 3d model of the Tetrahymena thermophila ribozyme

Author keywords

group I intron; ribozyme; RNA folding; RNA modelling; RNA RNA interactions

Indexed keywords


EID: 0030452773     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-5521(96)90166-0     Document Type: Article
Times cited : (280)

References (85)
  • 1
    • 0003017978 scopus 로고
    • Structure and mechanism of the large catalytic RNAs: Group I and group II introns and ribonuclease P
    • (Gesteland, R.F. & Atkins, J.F., ed.), Cold Spring Harbor Laboratory, Cold Spring Harbor
    • Cech, T.R. (1993). Structure and mechanism of the large catalytic RNAs: group I and group II introns and ribonuclease P. In The RNA world (Gesteland, R.F. & Atkins, J.F., ed.), pp. 239-269, Cold Spring Harbor Laboratory, Cold Spring Harbor.
    • (1993) The RNA World , pp. 239-269
    • Cech, T.R.1
  • 2
    • 0029985347 scopus 로고    scopus 로고
    • The environment of two metal ions surrounding the splice site of a group I intron
    • Streicher, B., Westhof, E. & Schroeder, R. (1996). The environment of two metal ions surrounding the splice site of a group I intron. EMBO J. 15, 2556-2564.
    • (1996) EMBO J. , vol.15 , pp. 2556-2564
    • Streicher, B.1    Westhof, E.2    Schroeder, R.3
  • 3
    • 0025367254 scopus 로고
    • Self-splicing of group I introns
    • Cech, T.R. (1990). Self-splicing of group I introns. Annu. Rev. Biochem. 59, 543-568.
    • (1990) Annu. Rev. Biochem. , vol.59 , pp. 543-568
    • Cech, T.R.1
  • 4
    • 0002849286 scopus 로고    scopus 로고
    • The structure of group I ribozymes
    • (Eckstein, F. & Lilley, D.M.J., eds.), Springer-Verlag, Berlin Heidelberg
    • Jaeger, L., Michel, F. & Westhof, E. (1996). The structure of group I ribozymes. In Catalytic RNA. Vol. 10, (Eckstein, F. & Lilley, D.M.J., eds.), pp. 33-51, Springer-Verlag, Berlin Heidelberg.
    • (1996) Catalytic RNA , vol.10 , pp. 33-51
    • Jaeger, L.1    Michel, F.2    Westhof, E.3
  • 5
    • 0024427177 scopus 로고
    • The guanosine binding site of the Tetrahymena ribozyme
    • Michel, F., Hanna, M., Green, R., Bartel, D.P. & Szostak, J.W. (1989). The guanosine binding site of the Tetrahymena ribozyme. Nature 342, 391-395.
    • (1989) Nature , vol.342 , pp. 391-395
    • Michel, F.1    Hanna, M.2    Green, R.3    Bartel, D.P.4    Szostak, J.W.5
  • 6
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel, F. & Westhof, E. (1990). Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216, 585-610.
    • (1990) J. Mol. Biol. , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 7
    • 0025877764 scopus 로고
    • Group I intron self splicing with adenosine: Evidence for a single nucleoside binding site
    • Been, M.D. & Perrotta, A.T. (1991). Group I intron self splicing with adenosine: evidence for a single nucleoside binding site. Science 252, 434-437.
    • (1991) Science , vol.252 , pp. 434-437
    • Been, M.D.1    Perrotta, A.T.2
  • 8
    • 0025300631 scopus 로고
    • Minimum secondary structure requirements for catalytic activity of self-splicing group I intron
    • Beaudry, A.A. & Joyce, G.F. (1990). Minimum secondary structure requirements for catalytic activity of self-splicing group I intron. Biochemistry 29, 6534-6539.
    • (1990) Biochemistry , vol.29 , pp. 6534-6539
    • Beaudry, A.A.1    Joyce, G.F.2
  • 9
    • 0026017131 scopus 로고
    • Reconstitution of a group I intron self-splicing reaction with an activator RNA
    • Van Der Horst, G., Christian, A. & Inoue, T. (1991). Reconstitution of a group I intron self-splicing reaction with an activator RNA. Proc. Natl. Acad. Sci. 88, 184-188.
    • (1991) Proc. Natl. Acad. Sci. , vol.88 , pp. 184-188
    • Van Der Horst, G.1    Christian, A.2    Inoue, T.3
  • 10
    • 0025993615 scopus 로고
    • Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA
    • Jaeger, L., Westhof, E. & Michel, F. (1991) . Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA. J. mol. Biol. 221, 1153-1164.
    • (1991) J. Mol. Biol. , vol.221 , pp. 1153-1164
    • Jaeger, L.1    Westhof, E.2    Michel, F.3
  • 11
    • 0027433710 scopus 로고
    • Monitoring of the cooperative unfolding of the sunY group I intron of the bacteriophage T4. The active form of the sunY ribozyme is stabilized by multiple interactions with 3′ terminal intron components
    • Jaeger, L., Westhof, E. & Michel, F. (1993). Monitoring of the cooperative unfolding of the sunY group I intron of the bacteriophage T4. The active form of the sunY ribozyme is stabilized by multiple interactions with 3′ terminal intron components. J. Mol. Biol. 234, 331-346.
    • (1993) J. Mol. Biol. , vol.234 , pp. 331-346
    • Jaeger, L.1    Westhof, E.2    Michel, F.3
  • 12
    • 0028294458 scopus 로고
    • Involvement of a GNRA tetraloop in long-range RNA tertiary interactions
    • Jaeger, L., Michel, F. & Westhof, E. (1994). Involvement of a GNRA tetraloop in long-range RNA tertiary interactions. J. Mol. Biol. 236, 1271-1276.
    • (1994) J. Mol. Biol. , vol.236 , pp. 1271-1276
    • Jaeger, L.1    Michel, F.2    Westhof, E.3
  • 13
    • 0026770256 scopus 로고
    • Activation of the catalytic core of a group I intron by a remote 3′ splice junction
    • Michel, F., et al., & Shub, D.A. (1992). Activation of the catalytic core of a group I intron by a remote 3′ splice junction. Genes & Dev. 6, 1373-1385.
    • (1992) Genes & Dev. , vol.6 , pp. 1373-1385
    • Michel, F.1    Shub, D.A.2
  • 14
    • 0027173193 scopus 로고
    • An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme
    • Murphy, F.L. & Cech, T.R. (1993). An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme. Biochemistry 32, 5291-5300.
    • (1993) Biochemistry , vol.32 , pp. 5291-5300
    • Murphy, F.L.1    Cech, T.R.2
  • 15
    • 0028301674 scopus 로고
    • GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain
    • Murphy, F.L. & Cech, T.R. (1994). GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. J. Mol. Biol. 236, 49-63.
    • (1994) J. Mol. Biol. , vol.236 , pp. 49-63
    • Murphy, F.L.1    Cech, T.R.2
  • 16
    • 0029746472 scopus 로고    scopus 로고
    • Isolation of a local tertiary folding transition in the context of a globally folded RNA
    • Narlikar, G.J. & Herschlag, D. (1996). Isolation of a local tertiary folding transition in the context of a globally folded RNA. Nat Struct. Biol. 3, 701-710.
    • (1996) Nat Struct. Biol. , vol.3 , pp. 701-710
    • Narlikar, G.J.1    Herschlag, D.2
  • 17
    • 0025963132 scopus 로고
    • Visualizing the higher folding of a catalytic RNA molecule
    • Celander, D.W. & Cech, T.R. (1991). Visualizing the higher folding of a catalytic RNA molecule. Science 251, 401-407.
    • (1991) Science , vol.251 , pp. 401-407
    • Celander, D.W.1    Cech, T.R.2
  • 18
    • 0027985820 scopus 로고
    • Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme
    • Murphy, F.L., Wang, Y., Griffith, J.D. & Cech, T.R. (1994). Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme. Science 265, 1709-1712.
    • (1994) Science , vol.265 , pp. 1709-1712
    • Murphy, F.L.1    Wang, Y.2    Griffith, J.D.3    Cech, T.R.4
  • 20
    • 0024359787 scopus 로고
    • Defining the inside and outside of a catalytic RNA molecule
    • Latham, J.A. & Cech, T.R. (1989). Defining the inside and outside of a catalytic RNA molecule. Science 245, 276-282.
    • (1989) Science , vol.245 , pp. 276-282
    • Latham, J.A.1    Cech, T.R.2
  • 21
    • 0026338178 scopus 로고
    • Folding of group I introns from bacteriophage T4 involves internalization of the catalytic core
    • Heuer, T.S., Chandry, R.S., Belfort, M., Celander, D.W. & Cech, T.R. (1991). Folding of group I introns from bacteriophage T4 involves internalization of the catalytic core. Proc. Natl. Acad. Sci. 88, 11105-11109.
    • (1991) Proc. Natl. Acad. Sci. , vol.88 , pp. 11105-11109
    • Heuer, T.S.1    Chandry, R.S.2    Belfort, M.3    Celander, D.W.4    Cech, T.R.5
  • 22
    • 0028239266 scopus 로고
    • Two major tertiary folding transitions of the Tetrahymena catalytic RNA
    • Laggerbauer, B., Murphy, F.L. & Cech, T.R. (1994). Two major tertiary folding transitions of the Tetrahymena catalytic RNA. EMBO J. 13, 2669-2676.
    • (1994) EMBO J. , vol.13 , pp. 2669-2676
    • Laggerbauer, B.1    Murphy, F.L.2    Cech, T.R.3
  • 23
    • 0024967388 scopus 로고
    • Catalytic activity is retained in the Tetrahymena group I intron despite removal of the large extension of element P5
    • Joyce, G.F., Van der Horst, G. & Inoue, T. (1989). Catalytic activity is retained in the Tetrahymena group I intron despite removal of the large extension of element P5. Nucleic Acids Res. 17, 7879-7889.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 7879-7889
    • Joyce, G.F.1    Van Der Horst, G.2    Inoue, T.3
  • 24
    • 0025885722 scopus 로고
    • Mutations in a non-conserved sequence of the Tetrahymena ribozyme increase activity and specificity
    • Young, B., Herschlag, D. & Cech, T.R. (1991). Mutations in a non-conserved sequence of the Tetrahymena ribozyme increase activity and specificity. Cell 67, 1007-1019.
    • (1991) Cell , vol.67 , pp. 1007-1019
    • Young, B.1    Herschlag, D.2    Cech, T.R.3
  • 25
    • 0026580844 scopus 로고
    • Evidence for processivity and two-step binding of the RNA substrate from studies of J1/2 mutants of the Tetrahymena ribozyme
    • Herschlag, D. (1992). Evidence for processivity and two-step binding of the RNA substrate from studies of J1/2 mutants of the Tetrahymena ribozyme. Biochemistry 31, 1386-1399.
    • (1992) Biochemistry , vol.31 , pp. 1386-1399
    • Herschlag, D.1
  • 26
    • 0028302627 scopus 로고
    • A tertiary interaction in the Tetrahymena intron contributes to selection of the 5′ splice site
    • Downs, W.D. & Cech, T.R. (1994). A tertiary interaction in the Tetrahymena intron contributes to selection of the 5′ splice site. Genes & Dev. 8, 1198-1211.
    • (1994) Genes & Dev. , vol.8 , pp. 1198-1211
    • Downs, W.D.1    Cech, T.R.2
  • 27
    • 0028308320 scopus 로고
    • P2 functions as a spacer in the Tetrahymena ribozyme
    • Peyman, A. (1994). P2 functions as a spacer in the Tetrahymena ribozyme. Nucl. Acids Res. 22, 1383-1388.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 1383-1388
    • Peyman, A.1
  • 28
    • 0023651204 scopus 로고
    • Selection of cyclization sites in group I IVS RNA requires multiple alignments of an internal template like sequence
    • Been, M.D. & Cech, T.R. (1987). Selection of cyclization sites in group I IVS RNA requires multiple alignments of an internal template like sequence. Cell 50, 951-961.
    • (1987) Cell , vol.50 , pp. 951-961
    • Been, M.D.1    Cech, T.R.2
  • 29
    • 0027434244 scopus 로고
    • Thermal unfolding of a group I ribozyme: The low temperature transition is primarily disruption of tertiary structure
    • Banerjee, A.R., Jaeger, J.A. & Turner, D.H. (1993). Thermal unfolding of a group I ribozyme: the low temperature transition is primarily disruption of tertiary structure. Biochemistry 32, 153-163.
    • (1993) Biochemistry , vol.32 , pp. 153-163
    • Banerjee, A.R.1    Jaeger, J.A.2    Turner, D.H.3
  • 30
    • 0029864990 scopus 로고    scopus 로고
    • The P9.1-P9.2 peripheral extension helps guide folding of the Tetrahymena ribozyme
    • Zarrinkar, P.P. & Williamson, J.R. (1996). The P9.1-P9.2 peripheral extension helps guide folding of the Tetrahymena ribozyme. Nucl. Acids Res. 24, 854-858.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 854-858
    • Zarrinkar, P.P.1    Williamson, J.R.2
  • 31
    • 0028921811 scopus 로고
    • Frequent use of the same tertiary motif by self-folding RNAs
    • Costa, M. & Michel, R (1995). Frequent use of the same tertiary motif by self-folding RNAs. EMBO J. 14, 1276-1285.
    • (1995) EMBO J. , vol.14 , pp. 1276-1285
    • Costa, M.1    Michel, R.2
  • 32
    • 0025811980 scopus 로고
    • Incipient mitochondrial evolution in yeast. II. The complete sequence of the gene coding for cytochrome b in Saccharomyces douglasii reveals the presence of both new and conserved introns and discloses major differences in the fixation of mutations in evolution
    • Tian, G.-L., Michel, F., Macadre, C., Slonimski, P.P. & Lazowska, J. (1991). Incipient mitochondrial evolution in yeast. II. The complete sequence of the gene coding for cytochrome b in Saccharomyces douglasii reveals the presence of both new and conserved introns and discloses major differences in the fixation of mutations in evolution. J. Mol. Biol. 218, 747-760.
    • (1991) J. Mol. Biol. , vol.218 , pp. 747-760
    • Tian, G.-L.1    Michel, F.2    Macadre, C.3    Slonimski, P.P.4    Lazowska, J.5
  • 33
    • 0029804920 scopus 로고    scopus 로고
    • Function of a pseudoknot in the suppression of an alternative splicing event in group I intron
    • Jaeger, L., Westhof, E. & Michel, F. (1996). Function of a pseudoknot in the suppression of an alternative splicing event in group I intron. Biochimie 78, 466-473.
    • (1996) Biochimie , vol.78 , pp. 466-473
    • Jaeger, L.1    Westhof, E.2    Michel, F.3
  • 34
    • 0024432780 scopus 로고
    • A conserved base pair within helix P4 of the Tetrahymena ribozyme helps to form the tertiary structure required for self-splicing
    • Flor, P.J., Flanegan, J.B. & Cech, T.R. (1989). A conserved base pair within helix P4 of the Tetrahymena ribozyme helps to form the tertiary structure required for self-splicing. EMBO J. 8, 3391-3399.
    • (1989) EMBO J. , vol.8 , pp. 3391-3399
    • Flor, P.J.1    Flanegan, J.B.2    Cech, T.R.3
  • 35
    • 0026729278 scopus 로고
    • RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme
    • Pyle, A.M., Murphy, F.L. & Cech, T.R. (1992). RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme. Nature 358, 123-128.
    • (1992) Nature , vol.358 , pp. 123-128
    • Pyle, A.M.1    Murphy, F.L.2    Cech, T.R.3
  • 36
    • 0027767532 scopus 로고
    • Tertiary interactions with the internal guide sequence mediate docking of the P1 helix into the catalytic core of the Tetrahymena ribozyme
    • Strobel, S.A. & Cech, T.R. (1993). Tertiary interactions with the internal guide sequence mediate docking of the P1 helix into the catalytic core of the Tetrahymena ribozyme. Biochemistry 32, 13593-13604.
    • (1993) Biochemistry , vol.32 , pp. 13593-13604
    • Strobel, S.A.1    Cech, T.R.2
  • 37
    • 0028367586 scopus 로고
    • Translocation of an RNA duplex on a ribozyme
    • Strobel, S.A. & Cech, T.R. (1994). Translocation of an RNA duplex on a ribozyme. Nat. Struct Biol. 1, 13-17.
    • (1994) Nat. Struct Biol. , vol.1 , pp. 13-17
    • Strobel, S.A.1    Cech, T.R.2
  • 38
    • 0027237520 scopus 로고
    • Crystallization of ribozymes and small RNA motifs by sparse matrix approach
    • Doudna, J.A., Grosshans, C., Gooding, A. & Kundrot, C.E. (1993). Crystallization of ribozymes and small RNA motifs by sparse matrix approach. Proc. Natl. Acad. Sci. 90, 7829-7833.
    • (1993) Proc. Natl. Acad. Sci. , vol.90 , pp. 7829-7833
    • Doudna, J.A.1    Grosshans, C.2    Gooding, A.3    Kundrot, C.E.4
  • 39
    • 0028916219 scopus 로고
    • Identification of base-triples in RNA using comparative sequence analysis
    • Gautheret, D., Damberger, S.H. & Gutell, R.R. (1995). Identification of base-triples in RNA using comparative sequence analysis. J. Mol. Biol. 248, 27-43.
    • (1995) J. Mol. Biol. , vol.248 , pp. 27-43
    • Gautheret, D.1    Damberger, S.H.2    Gutell, R.R.3
  • 40
    • 0025371287 scopus 로고
    • An ultraviolet-inducible adenosineadenosine cross-link reflects the catalytic structure of the Tetrahymena ribozyme
    • Downs, W.D. & Cech, T.R. (1990). An ultraviolet-inducible adenosineadenosine cross-link reflects the catalytic structure of the Tetrahymena ribozyme. Biochemistry 29, 5605-5613.
    • (1990) Biochemistry , vol.29 , pp. 5605-5613
    • Downs, W.D.1    Cech, T.R.2
  • 41
    • 0027990605 scopus 로고
    • Use of photoaffinity crosslink and molecular modelling to analyze the global architecture of ribonuclease P RNA
    • Harris, M.E., Nolan, J.M., Malhotra, A., Brown, J.W., Harvey, S.C. & Pace, N.R. (1994). Use of photoaffinity crosslink and molecular modelling to analyze the global architecture of ribonuclease P RNA. EMBOJ. 13, 3953-3963.
    • (1994) EMBOJ. , vol.13 , pp. 3953-3963
    • Harris, M.E.1    Nolan, J.M.2    Malhotra, A.3    Brown, J.W.4    Harvey, S.C.5    Pace, N.R.6
  • 42
    • 0029935208 scopus 로고    scopus 로고
    • Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements
    • Brown, J.W., Nolan, J.M., Haas, E.S., Rubio, M.A., Major, F. & Pace, N.R. (1996). Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements. Proc. Natl. Acad. Sci. 93, 3001-3006.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 3001-3006
    • Brown, J.W.1    Nolan, J.M.2    Haas, E.S.3    Rubio, M.A.4    Major, F.5    Pace, N.R.6
  • 43
    • 0028362214 scopus 로고
    • Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli
    • Westhof, E. & Altmann, S. (1994). Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli. Proc. Natl. Acad. Sci. 91, 5133-5137.
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 5133-5137
    • Westhof, E.1    Altmann, S.2
  • 44
    • 0028300137 scopus 로고
    • Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy
    • Wang, Y.-H., Murphy, F.L., Cech, T.R. & Griffith, J.D. (1994). Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy. J. Mol. Biol. 236, 64-71.
    • (1994) J. Mol. Biol. , vol.236 , pp. 64-71
    • Wang, Y.-H.1    Murphy, F.L.2    Cech, T.R.3    Griffith, J.D.4
  • 45
    • 0027991626 scopus 로고
    • Kinetic intermediates in RNA folding
    • Zarrinkar, P.P. & Williamson, J.R. (1994). Kinetic intermediates in RNA folding. Science 265, 918-924.
    • (1994) Science , vol.265 , pp. 918-924
    • Zarrinkar, P.P.1    Williamson, J.R.2
  • 46
    • 0029874598 scopus 로고    scopus 로고
    • The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding
    • Zarrinkar, P.P. & Williamson, J.R. (1996). The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding. Nat. Struct. Biol. 3, 432-438.
    • (1996) Nat. Struct. Biol. , vol.3 , pp. 432-438
    • Zarrinkar, P.P.1    Williamson, J.R.2
  • 47
    • 0029155840 scopus 로고
    • Protein facilitation of group I intron splicing by assembly of the catalytic core and the 5′ splice site domain
    • Weeks, K.M. & Cech, T.R. (1995). Protein facilitation of group I intron splicing by assembly of the catalytic core and the 5′ splice site domain. Cell 82, 221-230.
    • (1995) Cell , vol.82 , pp. 221-230
    • Weeks, K.M.1    Cech, T.R.2
  • 48
    • 0029050588 scopus 로고
    • Efficient protein-facilitated splicing of the yeast mitochondrial bl5 intron
    • Weeks, K.M. & Cech, T.R. (1995). Efficient protein-facilitated splicing of the yeast mitochondrial bl5 intron. Biochemistry 34, 7728-7738.
    • (1995) Biochemistry , vol.34 , pp. 7728-7738
    • Weeks, K.M.1    Cech, T.R.2
  • 49
    • 0030593036 scopus 로고    scopus 로고
    • Assembly of a ribonucleoprotein catalyst by tertiary structure capture
    • Weeks, K.M. & Cech, T.R. (1996). Assembly of a ribonucleoprotein catalyst by tertiary structure capture. Science 271, 345-348.
    • (1996) Science , vol.271 , pp. 345-348
    • Weeks, K.M.1    Cech, T.R.2
  • 50
    • 0029100264 scopus 로고
    • Relative orientation of RNA helices in a group I ribozyme determined by helix extension electron microscopy
    • Nakamura, T.M., Wang, Y., Zaug, A.J., Griffith, J.D. & Cech, T.R. (1995). Relative orientation of RNA helices in a group I ribozyme determined by helix extension electron microscopy. EMBO J. 14, 4849-4859.
    • (1995) EMBO J. , vol.14 , pp. 4849-4859
    • Nakamura, T.M.1    Wang, Y.2    Zaug, A.J.3    Griffith, J.D.4    Cech, T.R.5
  • 51
    • 0002664413 scopus 로고    scopus 로고
    • RNA tectonics: Towards RNA design
    • Westhof, E., Masquida, B. & Jaeger, L. (1996). RNA tectonics: towards RNA design. Fold. Des. 1, 78-88.
    • (1996) Fold. Des. , vol.1 , pp. 78-88
    • Westhof, E.1    Masquida, B.2    Jaeger, L.3
  • 52
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley, H.W., Flaherty, K.M. & Mckay, D.B. (1994). Three-dimensional structure of a hammerhead ribozyme. Nature 372, 68-74.
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    Mckay, D.B.3
  • 56
    • 0020958467 scopus 로고
    • Loop stereochemistry and dynamics in transfer RNA
    • Westhof, E., Dumas, P. & Moras, D. (1983). Loop stereochemistry and dynamics in transfer RNA. J. Biomol. Struct. Dyn. 1, 337-355.
    • (1983) J. Biomol. Struct. Dyn. , vol.1 , pp. 337-355
    • Westhof, E.1    Dumas, P.2    Moras, D.3
  • 57
    • 0021645945 scopus 로고
    • Control of ColE1 plasmid replication: The process of binding of RNA I to the primer trascript
    • Tomizawa, J. (1984). Control of ColE1 plasmid replication: the process of binding of RNA I to the primer trascript. Cell 38, 861-870.
    • (1984) Cell , vol.38 , pp. 861-870
    • Tomizawa, J.1
  • 58
    • 0021826943 scopus 로고
    • Control of ColE1 plasmid replication : Initial interaction of RNA I and the primer transcript is reversible
    • Tomizawa, J. (1985). Control of ColE1 plasmid replication : initial interaction of RNA I and the primer transcript is reversible. Cell 40, 527-535.
    • (1985) Cell , vol.40 , pp. 527-535
    • Tomizawa, J.1
  • 59
    • 0025104511 scopus 로고
    • Control of replication of plasmid R1 : Structures and sequences of the antisense RNA, CopA, required for its binding to the target RNA, CopT
    • Persson, C., Wagner, E.G.H. & Nordström, K. (1990). Control of replication of plasmid R1 : structures and sequences of the antisense RNA, CopA, required for its binding to the target RNA, CopT. EMBO J. 9, 3767-3775.
    • (1990) EMBO J. , vol.9 , pp. 3767-3775
    • Persson, C.1    Wagner, E.G.H.2    Nordström, K.3
  • 60
    • 0025168720 scopus 로고
    • Control of replication of plasmid R1 : Formation of an initial transient complex is rate-limiting for anti-sense RNA/target RNA pairing
    • Persson, C., Wagner, E.G.H. & Nordström, K. (1990). Control of replication of plasmid R1 : formation of an initial transient complex is rate-limiting for anti-sense RNA/target RNA pairing. EMBO J. 9, 3777-3785.
    • (1990) EMBO J. , vol.9 , pp. 3777-3785
    • Persson, C.1    Wagner, E.G.H.2    Nordström, K.3
  • 61
    • 0029058784 scopus 로고
    • Determinants of RNA hairpin loop-loop complex stability
    • Gregorian, R.S.J. & Crothers, M.D. (1995). Determinants of RNA hairpin loop-loop complex stability. J. Mol. Biol. 248, 968-984.
    • (1995) J. Mol. Biol. , vol.248 , pp. 968-984
    • Gregorian, R.S.J.1    Crothers, M.D.2
  • 62
    • 0029001288 scopus 로고
    • Bent helix formation between RNA hairpins with complementary loops
    • Marino, J.P., Gregorian, R.S.J., Gsankovszki, G. & Crothers, M.D. (1995). Bent helix formation between RNA hairpins with complementary loops. Science 268, 1148-1454.
    • (1995) Science , vol.268 , pp. 1148-1454
    • Marino, J.P.1    Gregorian, R.S.J.2    Gsankovszki, G.3    Crothers, M.D.4
  • 64
    • 0029805902 scopus 로고    scopus 로고
    • Activity and thermostability of the small self-splicing group I intron in the pre-tRNA lle of the purple bacterium Azoarcus
    • Tanner, M.A. & Cech, T.R. (1996). Activity and thermostability of the small self-splicing group I intron in the pre-tRNA lle of the purple bacterium Azoarcus. RNA 2, 74-83.
    • (1996) RNA , vol.2 , pp. 74-83
    • Tanner, M.A.1    Cech, T.R.2
  • 65
    • 0029869019 scopus 로고    scopus 로고
    • A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core
    • Caprara, M.G., Mohr, G. & Lambowitz, A.M. (1996). A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core. J. Mol. Biol. 257, 512-531.
    • (1996) J. Mol. Biol. , vol.257 , pp. 512-531
    • Caprara, M.G.1    Mohr, G.2    Lambowitz, A.M.3
  • 66
    • 0028472621 scopus 로고
    • Inventing and improving ribozyme function: Rational design versus iterative selection methods
    • Breaker, R.R. & Joyce, G.F. (1994). Inventing and improving ribozyme function: rational design versus iterative selection methods. Trends Biotechnol. 12, 268-275.
    • (1994) Trends Biotechnol. , vol.12 , pp. 268-275
    • Breaker, R.R.1    Joyce, G.F.2
  • 67
    • 0029796982 scopus 로고    scopus 로고
    • RNA tertiary structure mediation by adenosine platforms
    • Cate, J.H., et al., & Doudna, J.A. (1996). RNA tertiary structure mediation by adenosine platforms. Science 273, 1696-1699.
    • (1996) Science , vol.273 , pp. 1696-1699
    • Cate, J.H.1    Doudna, J.A.2
  • 68
    • 0029820625 scopus 로고    scopus 로고
    • Crystal structure of a group I ribozyme domain: Principles of RNA packing
    • Cate, J.H., et al., & Doudna, J.A. (1996). Crystal structure of a group I ribozyme domain: principles of RNA packing. Science 273, 1678-1684.
    • (1996) Science , vol.273 , pp. 1678-1684
    • Cate, J.H.1    Doudna, J.A.2
  • 69
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T.A., Roberts, J.D. & Zakour, R.A. (1987). Rapid and efficient site-specific mutagenesis without phenotypic selection. Meth. Enzymol. 154, 367-382.
    • (1987) Meth. Enzymol. , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 70
    • 0001320146 scopus 로고
    • Modelling the three-dimensional structure of ribonucleic acids
    • Westhof, E. (1993). Modelling the three-dimensional structure of ribonucleic acids. J. Mol. Struct. (Theochem) 286, 203-210.
    • (1993) J. Mol. Struct. (Theochem) , vol.286 , pp. 203-210
    • Westhof, E.1
  • 71
    • 0028500393 scopus 로고
    • DRAWNA: A program for drawing schematic views of nucleic acids
    • Massire, C., Gaspin, C. & Westhof, E. (1994). DRAWNA: a program for drawing schematic views of nucleic acids. J. Mol. Graphics 12, 201-206.
    • (1994) J. Mol. Graphics , vol.12 , pp. 201-206
    • Massire, C.1    Gaspin, C.2    Westhof, E.3
  • 72
    • 0028441183 scopus 로고
    • Representation of the secondary and tertiary structure of group I introns
    • Cech, T.R., Damberger, S.H. & Gutell, R.R. (1994). Representation of the secondary and tertiary structure of group I introns. Nat. Struct. Biol. 1, 273-280.
    • (1994) Nat. Struct. Biol. , vol.1 , pp. 273-280
    • Cech, T.R.1    Damberger, S.H.2    Gutell, R.R.3
  • 73
    • 0025900454 scopus 로고
    • A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus
    • Davila-Aponte, J.A., Huss, V.A.R., Sogin, M.L. & Cech, T.R. (1991). A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus. Nucleic Acids Res. 19, 4429-4436.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4429-4436
    • Davila-Aponte, J.A.1    Huss, V.A.R.2    Sogin, M.L.3    Cech, T.R.4
  • 74
    • 0030020693 scopus 로고    scopus 로고
    • Primary and secondary structure analyses of the rDNA group I introns of the Zygnematales (Charophyta)
    • Bhattacharya, D., Damberger, S., Srek, B. & Melkonian, M. (1996). Primary and secondary structure analyses of the rDNA group I introns of the Zygnematales (Charophyta). Curr. Genet. 29, 282-286.
    • (1996) Curr. Genet. , vol.29 , pp. 282-286
    • Bhattacharya, D.1    Damberger, S.2    Srek, B.3    Melkonian, M.4
  • 75
    • 0028286418 scopus 로고
    • Characterization of Arxula adeninivorans strains from different habitats
    • Kunze, G. & Kunze, I. (1994). Characterization of Arxula adeninivorans strains from different habitats. Antonie Van Leeuwenhoek 65, 29-34.
    • (1994) Antonie Van Leeuwenhoek , vol.65 , pp. 29-34
    • Kunze, G.1    Kunze, I.2
  • 76
    • 0027722247 scopus 로고
    • Correlation between the presence of a self-splicing intron in the 25S rDNA of Candida albicans and strain susceptibility to 5-fluorocytosine
    • Mercure, S., Montplaisir, S. & Lemay, G. (1993). Correlation between the presence of a self-splicing intron in the 25S rDNA of Candida albicans and strain susceptibility to 5-fluorocytosine. Nucleic Acids Res. 21, 6020-6027.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 6020-6027
    • Mercure, S.1    Montplaisir, S.2    Lemay, G.3
  • 77
    • 0028079880 scopus 로고
    • Identification of group I introns in the 28S rDNA of the entomopathogenic fungus Beauveria brongniartii
    • Neuvéglise, C. & Brygoo, Y. (1994). Identification of group I introns in the 28S rDNA of the entomopathogenic fungus Beauveria brongniartii. Curr. Genet. 27, 38-45.
    • (1994) Curr. Genet. , vol.27 , pp. 38-45
    • Neuvéglise, C.1    Brygoo, Y.2
  • 78
    • 0028208494 scopus 로고
    • An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing
    • Johansen, S. & Vogt, V.M. (1994). An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing. Cell 76, 725-734.
    • (1994) Cell , vol.76 , pp. 725-734
    • Johansen, S.1    Vogt, V.M.2
  • 79
    • 0029024999 scopus 로고
    • The origin of land plants: Phyiogenetic relationships among charophytes, bryophytes and vascular plants inferred from complete small-subunit ribosomal RNA gene sequences
    • Kranz, H.D., Miks, D., Siegler, M.L., Capesius, I., Sensen, C.W. & Huss, V.A. (1995). The origin of land plants: phyiogenetic relationships among charophytes, bryophytes and vascular plants inferred from complete small-subunit ribosomal RNA gene sequences. J. Mol. Evol. 41, 74-84.
    • (1995) J. Mol. Evol. , vol.41 , pp. 74-84
    • Kranz, H.D.1    Miks, D.2    Siegler, M.L.3    Capesius, I.4    Sensen, C.W.5    Huss, V.A.6
  • 80
    • 0028251940 scopus 로고
    • Phylogenetic placement of the basidiomycete yeasts Kondoa mavinella and Rhodoporidium dacryoidum, and the anamorphic yeast Sympodiomycepsis paphiopedili by means of 18S rRNA gene sequence analysis
    • Suh, S. & Sugiyama, J. (1994). Phylogenetic placement of the basidiomycete yeasts Kondoa mavinella and Rhodoporidium dacryoidum, and the anamorphic yeast Sympodiomycepsis paphiopedili by means of 18S rRNA gene sequence analysis. Mycoscience 35, 367-375.
    • (1994) Mycoscience , vol.35 , pp. 367-375
    • Suh, S.1    Sugiyama, J.2
  • 81
    • 0028166295 scopus 로고
    • Taxonomic identification of foraminifera using ribosomal RNA sequences
    • Pawlowski, J., Bolivar, I., Fahrni, J. & Zaninetti, L (1994). Taxonomic identification of foraminifera using ribosomal RNA sequences. Micropaleontol. 40, 373-377.
    • (1994) Micropaleontol. , vol.40 , pp. 373-377
    • Pawlowski, J.1    Bolivar, I.2    Fahrni, J.3    Zaninetti, L.4
  • 82
    • 0029928715 scopus 로고    scopus 로고
    • The mitochondrial DNA of Allomyces macrogynus: The complete genomic sequence from an ancestral fungus
    • Paquin, B. & Lang, B.F. (1996). The mitochondrial DNA of Allomyces macrogynus: the complete genomic sequence from an ancestral fungus. J. Mol. Biol. 255, 373-377.
    • (1996) J. Mol. Biol. , vol.255 , pp. 373-377
    • Paquin, B.1    Lang, B.F.2
  • 83
    • 0027172613 scopus 로고
    • Mitochondria genes in the colourless alga Prototheca wickerhamii resemble plant genes in their exons but fungal genes in their introns
    • Wolff, G., Burger, G., Lang, B. & Kueck, U. (1993). Mitochondria genes in the colourless alga Prototheca wickerhamii resemble plant genes in their exons but fungal genes in their introns. Nucleic Acids Res. 21, 719-726.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 719-726
    • Wolff, G.1    Burger, G.2    Lang, B.3    Kueck, U.4
  • 84
    • 0027395116 scopus 로고
    • Sequence of the mitochondrial gene encoding subunit I of cytochrome oxidase in Saccharomyces douglasii
    • Tian, G.-L., Michel, F., Macadre, C. & Lazowska, J. (1993). Sequence of the mitochondrial gene encoding subunit I of cytochrome oxidase in Saccharomyces douglasii. Gene 124, 153-163.
    • (1993) Gene , vol.124 , pp. 153-163
    • Tian, G.-L.1    Michel, F.2    Macadre, C.3    Lazowska, J.4
  • 85
    • 0021755764 scopus 로고
    • Solvent accessible surface area and excluded volume in proteins
    • Richmond, T.J. (1984). Solvent accessible surface area and excluded volume in proteins. J. Mol. Biol. 178, 63-89.
    • (1984) J. Mol. Biol. , vol.178 , pp. 63-89
    • Richmond, T.J.1


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