-
1
-
-
0031564663
-
Identification of functional domains in the self-cleaving Neurospora VS ribozyme using damage selection
-
Beattie T.L., Collins R.A. Identification of functional domains in the self-cleaving Neurospora VS ribozyme using damage selection. J. Mol. Biol. 267:1997;830-840
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 830-840
-
-
Beattie, T.L.1
Collins, R.A.2
-
2
-
-
0029011972
-
A secondary-structure model for the self-cleaving region of Neurospora VS RNA
-
Beattie T.L., Olive J.E., Collins R.A. A secondary-structure model for the self-cleaving region of Neurospora VS RNA. Proc. Natl Acad. Sci. USA. 92:1995;4686-4690
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 4686-4690
-
-
Beattie, T.L.1
Olive, J.E.2
Collins, R.A.3
-
3
-
-
0018125212
-
Reactions at the termini of tRNA with T4 RNA ligase
-
Bruce A.G., Uhlenbeck O.C. Reactions at the termini of tRNA with T4 RNA ligase. Nucl. Acids Res. 5:1978;3665-3677
-
(1978)
Nucl. Acids Res.
, vol.5
, pp. 3665-3677
-
-
Bruce, A.G.1
Uhlenbeck, O.C.2
-
4
-
-
0030587890
-
Metal-binding sites in the major groove of a large ribozyme domain
-
Cate J.H., Doudna J.A. Metal-binding sites in the major groove of a large ribozyme domain. Structure. 4:1996;1221-1229
-
(1996)
Structure
, vol.4
, pp. 1221-1229
-
-
Cate, J.H.1
Doudna, J.A.2
-
5
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate J.H., Gooding A.R., Podell E., Zhou K., Golden B.L., Kundrot C.E., Cech T.R., Doudna J.A. Crystal structure of a group I ribozyme domain principles of RNA packing. Science. 273:1996;1678-1685
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
6
-
-
0030929889
-
A magnesium ion core at the heart of a ribozyme domain
-
Cate J.H., Hanna R.L., Doudna J.A. A magnesium ion core at the heart of a ribozyme domain. Nature Struct. Biol. 4:1997;553-558
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 553-558
-
-
Cate, J.H.1
Hanna, R.L.2
Doudna, J.A.3
-
7
-
-
0028569768
-
Catalytic site components common to both splicing steps of a group II intron
-
Chanfreau G., Jacquier A. Catalytic site components common to both splicing steps of a group II intron. Science. 266:1994;1383-1387
-
(1994)
Science
, vol.266
, pp. 1383-1387
-
-
Chanfreau, G.1
Jacquier, A.2
-
8
-
-
0027049570
-
Analysis of the role of phosphate oxygens in the group I intron from Tetrahymena
-
Christian E.L., Yarus M. Analysis of the role of phosphate oxygens in the group I intron from Tetrahymena. J. Mol. Biol. 228:1992;743-758
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 743-758
-
-
Christian, E.L.1
Yarus, M.2
-
9
-
-
0027247579
-
Metal coordination sites that contribute to structure and catalysis in the group I intron fromTetrahymena
-
Christian E.L., Yarus M. Metal coordination sites that contribute to structure and catalysis in the group I intron fromTetrahymena. Biochemistry. 32:1993;4475-4480
-
(1993)
Biochemistry
, vol.32
, pp. 4475-4480
-
-
Christian, E.L.1
Yarus, M.2
-
10
-
-
0027416218
-
Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA
-
Collins R.A., Olive J.E. Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA. Biochemistry. 32:1993;2795-2799
-
(1993)
Biochemistry
, vol.32
, pp. 2795-2799
-
-
Collins, R.A.1
Olive, J.E.2
-
11
-
-
0021891882
-
Nucleoside phosphorothioates
-
Eckstein F. Nucleoside phosphorothioates. Annu. Rev. Biochem. 54:1985;367-402
-
(1985)
Annu. Rev. Biochem.
, vol.54
, pp. 367-402
-
-
Eckstein, F.1
-
12
-
-
0022418143
-
Bond order and charge localization in nucleoside phosphorothioates
-
Frey P.A., Sammons R.D. Bond order and charge localization in nucleoside phosphorothioates. Science. 228:1985;541-545
-
(1985)
Science
, vol.228
, pp. 541-545
-
-
Frey, P.A.1
Sammons, R.D.2
-
13
-
-
0024283277
-
DNA and RNA sequence determination based on phosphorothioate chemistry
-
Gish G., Eckstein F. DNA and RNA sequence determination based on phosphorothioate chemistry. Science. 240:1988;1520-1522
-
(1988)
Science
, vol.240
, pp. 1520-1522
-
-
Gish, G.1
Eckstein, F.2
-
14
-
-
0023665603
-
Stereospecificity of nucleases towards phosphorothioate-substituted RNA: Stereochemistry of transcription by T7 RNA polymerase
-
Griffiths A.D., Potter B.V., Eperon I.C. Stereospecificity of nucleases towards phosphorothioate-substituted RNA stereochemistry of transcription by T7 RNA polymerase. Nucl. Acids Res. 15:1987;4145-4162
-
(1987)
Nucl. Acids Res.
, vol.15
, pp. 4145-4162
-
-
Griffiths, A.D.1
Potter, B.V.2
Eperon, I.C.3
-
15
-
-
0028855671
-
Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from Neurospora VS RNA
-
Guo H.C., Collins R.A. Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from Neurospora VS RNA. EMBO J. 14:1995;368-376
-
(1995)
EMBO J.
, vol.14
, pp. 368-376
-
-
Guo, H.C.1
Collins, R.A.2
-
16
-
-
0027304542
-
Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA
-
Guo H.C., De Abreu D.M., Tillier E.R., Saville B.J., Olive J.E., Collins R.A. Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA. J. Mol. Biol. 232:1993;351-361
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 351-361
-
-
Guo, H.C.1
De Abreu, D.M.2
Tillier, E.R.3
Saville, B.J.4
Olive, J.E.5
Collins, R.A.6
-
17
-
-
0029018021
-
Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding
-
Hardt W.D., Warnecke J.M., Erdmann V.A., Hartmann R.K. Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding. EMBO J. 14:1995;2935-2944
-
(1995)
EMBO J.
, vol.14
, pp. 2935-2944
-
-
Hardt, W.D.1
Warnecke, J.M.2
Erdmann, V.A.3
Hartmann, R.K.4
-
18
-
-
0029286551
-
Identification of phosphates involved in catalysis by the ribozyme RNase P RNA
-
Harris M.E., Pace N.R. Identification of phosphates involved in catalysis by the ribozyme RNase P RNA. RNA. 1:1995;210-218
-
(1995)
RNA
, vol.1
, pp. 210-218
-
-
Harris, M.E.1
Pace, N.R.2
-
19
-
-
0018627368
-
Diastereomers of the nucleoside phosphorothioates as probes of the structure of the metal nucleotide substrates and of the nucleotide binding site of yeast hexokinase
-
Jaffe E.K., Cohn M. Diastereomers of the nucleoside phosphorothioates as probes of the structure of the metal nucleotide substrates and of the nucleotide binding site of yeast hexokinase. J. Biol. Chem. 254:1979;10839-10845
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 10839-10845
-
-
Jaffe, E.K.1
Cohn, M.2
-
20
-
-
0031020032
-
Complete identification of nonbridging phosphate oxygens involved in hammerhead cleavage
-
Knöll R., Bald R., Fürste J.P. Complete identification of nonbridging phosphate oxygens involved in hammerhead cleavage. RNA. 3:1997;132-140
-
(1997)
RNA
, vol.3
, pp. 132-140
-
-
Knöll, R.1
Bald, R.2
Fürste, J.P.3
-
21
-
-
0024828055
-
A guide for probing native small nuclear RNA and ribonucleoprotein structures
-
Krol A., Carbon P. A guide for probing native small nuclear RNA and ribonucleoprotein structures. Methods Enzymol. 180:1989;212-227
-
(1989)
Methods Enzymol.
, vol.180
, pp. 212-227
-
-
Krol, A.1
Carbon, P.2
-
23
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan J.F., Uhlenbeck O.C. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180:1989;51-62
-
(1989)
Methods Enzymol.
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
24
-
-
0021769550
-
2+ complexes of adenine nucleotides and thionucleotides and rate constants for formation and dissociation of MgATP and MgADP
-
2+ complexes of adenine nucleotides and thionucleotides and rate constants for formation and dissociation of MgATP and MgADP. Biochemistry. 23:1984;5262-5271
-
(1984)
Biochemistry
, vol.23
, pp. 5262-5271
-
-
Pecoraro, V.L.1
Hermes, J.D.2
Cleland, W.W.3
-
26
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley H.W., Flaherty K.M., McKay D.B. Three-dimensional structure of a hammerhead ribozyme. Nature. 372:1994;68-74
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
27
-
-
0032571266
-
Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA
-
In the press
-
Rastogi T., Collins R.A. Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA. J. Mol. Biol. 1998;. In the press
-
(1998)
J. Mol. Biol.
-
-
Rastogi, T.1
Collins, R.A.2
-
28
-
-
0029948820
-
A long-range pseudoknot is required for activity of the Neurospora VS ribozyme
-
Rastogi T., Beattie T.L., Olive J.E., Collins R.A. A long-range pseudoknot is required for activity of the Neurospora VS ribozyme. EMBO J. 15:1996;2820-2825
-
(1996)
EMBO J.
, vol.15
, pp. 2820-2825
-
-
Rastogi, T.1
Beattie, T.L.2
Olive, J.E.3
Collins, R.A.4
-
29
-
-
0021891233
-
Asp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. a comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea
-
Asp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea. J. Mol. Biol. 184:1985;455-471
-
(1985)
J. Mol. Biol.
, vol.184
, pp. 455-471
-
-
Romby, P.1
Moras, D.2
Bergdoll, M.3
Dumas, P.4
Vlassov, V.V.5
Westhof, E.6
Ebel, J.P.7
Giege, R.8
-
30
-
-
0026643792
-
Determinant nucleotides of yeast tRNA(Asp) interact directly with aspartyl-tRNA synthetase
-
Rudinger J., Puglisi J.D., Putz J., Schatz D., Eckstein F., Florentz C., Giege R. Determinant nucleotides of yeast tRNA(Asp) interact directly with aspartyl-tRNA synthetase. Proc. Natl Acad. Sci. USA. 89:1992;5882-5886
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 5882-5886
-
-
Rudinger, J.1
Puglisi, J.D.2
Putz, J.3
Schatz, D.4
Eckstein, F.5
Florentz, C.6
Giege, R.7
-
31
-
-
0025130635
-
Thiophosphate interference experiments locate phosphates important for the hammerhead RNA self-cleavage reaction
-
Ruffner D.E., Uhlenbeck O.C. Thiophosphate interference experiments locate phosphates important for the hammerhead RNA self-cleavage reaction. Nucl. Acids Res. 18:1990;6025-6029
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 6025-6029
-
-
Ruffner, D.E.1
Uhlenbeck, O.C.2
-
32
-
-
0025333084
-
A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria
-
Saville B.J., Collins R.A. A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria. Cell. 61:1990;685-696
-
(1990)
Cell
, vol.61
, pp. 685-696
-
-
Saville, B.J.1
Collins, R.A.2
-
33
-
-
0025996984
-
RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript
-
Saville B.J., Collins R.A. RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript. Proc. Natl Acad. Sci. USA. 88:1991;8826-8830
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 8826-8830
-
-
Saville, B.J.1
Collins, R.A.2
-
34
-
-
0025823329
-
Interaction of Escherichia coli tRNA(Ser) with its cognate aminoacyl-tRNA synthetase as determined by footprinting with phosphorothioate-containing tRNA transcripts
-
Schatz D., Leberman R., Eckstein F. Interaction of Escherichia coli tRNA(Ser) with its cognate aminoacyl-tRNA synthetase as determined by footprinting with phosphorothioate-containing tRNA transcripts. Proc. Natl Acad. Sci. USA. 88:1991;6132-6136
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 6132-6136
-
-
Schatz, D.1
Leberman, R.2
Eckstein, F.3
-
35
-
-
0010291050
-
Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7
-
Siebenlist U., Gilbert W. Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7. Proc. Natl Acad. Sci. USA. 77:1980;122-126
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 122-126
-
-
Siebenlist, U.1
Gilbert, W.2
-
36
-
-
0017194182
-
All oxygens in nucleic acids react with carcinogenic ethylating agents
-
Singer B. All oxygens in nucleic acids react with carcinogenic ethylating agents. Nature. 264:1976;333-339
-
(1976)
Nature
, vol.264
, pp. 333-339
-
-
Singer, B.1
-
37
-
-
0030833215
-
Metal ion catalysis during splicing of premessenger RNA
-
Sontheimer E.J., Sun S., Piccirilli J.A. Metal ion catalysis during splicing of premessenger RNA. Nature. 388:1997;801-805
-
(1997)
Nature
, vol.388
, pp. 801-805
-
-
Sontheimer, E.J.1
Sun, S.2
Piccirilli, J.A.3
-
38
-
-
0024843657
-
Identification of phosphate groups important to self-splicing of the Tetrahymena rRNA intron as determined by phosphorothioate substitution
-
Waring R.B. Identification of phosphate groups important to self-splicing of the Tetrahymena rRNA intron as determined by phosphorothioate substitution. Nucl. Acids Res. 17:1989;10281-10293
-
(1989)
Nucl. Acids Res.
, vol.17
, pp. 10281-10293
-
-
Waring, R.B.1
|