Host protein interactions with the 3' end of bovine coronavirus RNA and the requirement of the poly(A) tail for coronavirus defective genome replication

Journal of Virology

Volumn 74, Issue 11, 2000, Pages 5053-5065

  Spagnolo, Jeannie F ^a   Hogue, Brenda G ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; CYTOPLASM PROTEIN; POLYADENYLIC ACID; RNA BINDING PROTEIN; VIRUS RNA;

3' UNTRANSLATED REGION; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; CORONAVIRUS; CROSS LINKING; GEL MOBILITY SHIFT ASSAY; HUMAN; HUMAN CELL; MOLECULAR WEIGHT; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; SIGNAL TRANSDUCTION; VIRUS CELL INTERACTION; VIRUS GENOME; VIRUS MUTANT; VIRUS REPLICATION;

3' UNTRANSLATED REGIONS; ANIMALS; BINDING SITES; CATTLE; CORONAVIRUS, BOVINE; CROSS-LINKING REAGENTS; DEFECTIVE VIRUSES; DNA-BINDING PROTEINS; GENES, TUMOR SUPPRESSOR; GENOME, VIRAL; HUMANS; L CELLS (CELL LINE); MICE; MURINE HEPATITIS VIRUS; NUCLEAR PROTEINS; POLY(A)-BINDING PROTEINS; RNA, MESSENGER; RNA, VIRAL; RNA-BINDING PROTEINS; TUMOR CELLS, CULTURED; TUMOR SUPPRESSOR PROTEINS; ULTRAVIOLET RAYS; VIRUS REPLICATION;

EID: 0034122512     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.11.5053-5065.2000     Document Type: Article

References (64)

1. Adam, S. A., Y. D. Choi, and G. Dreyfuss. 1986. Interaction of mRNA with proteins in vesicular stomatitis virus-infected cells. J. Virol. 57:614-622.
2. Brian, D. A., R. Y. Chang, M. A. Hofmann, and P. B. Sethna. 1994. Role of subgenomic minus-strand RNA in coronavirus replication. Arch. Virol. Suppl. 9:173-180.
3. Campbell, L. H., K. T. Borg, J. K. Haines, R. T. Moon, D. R. Schoenberg, and S. J. Arrigo, 1994. Human immunodeficiency virus type 1 Rev is required in vivo for binding of poly(A)-binding protein to Rev-dependent RNAs. J. Virol. 68:5433-5438.
4. Chang, R. Y., and D. A. Brian. 1996. cis requirement for N-specific protein sequence in bovine coronavirus defective interfering RNA replication. J. Virol. 70:2201-2207.
5. Chang, R. Y., M. A. Hofmann, P. B. Sethna, and D. A. Brian. 1994. A cis-acting function for the coronavirus leader in defective interfering RNA replication. J. Virol. 68:8223-8231.
6. Craig, A. W., A. Haghighat, A. T. Yu, and N. Sonenberg. 1998. Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation. Nature 392:520-523.
7. Cui, T., S. Sankar, and A. G. Porter. 1993. Binding of encephalomyocarditis virus RNA polymerase to the 3′-noncoding region of the viral RNA is specific and requires the 3′-poly(A) tail. J. Biol. Chem. 268:26093-26098.
8. de Groot, R. J., R. G. van der Most, and W. J. Spaan. 1992. The fitness of defective interfering murine coronavirus DI-a and its derivatives is decreased by nonsense and frameshift mutations. J. Virol. 66:5898-5905.
9. de Vries, A. A., M. C. Horzinek, P. J. M. Rottier, and R. J. de Groot. 1997. The genome organization of the Nidovirales: similarities and differences between arteri-, toro-, and coronaviruses. Semin. Virol. 8:33-47.
10. Furuya, T., and M. M. Lai. 1993. Three different cellular proteins bind to complementary sites on the 5′-end-positive and 3′-end-negative strands of mouse hepatitis virus RNA. J. Virol. 67:7215-7222.
11. Gallie, D. R. 1998. A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation. Gene 216:1-11.
12. Gamarnik, A. V., and R. Andino. 1998. Switch from translation to RNA replication in a positive-stranded RNA virus. Genes Dev. 12:2293-2304.
13. Gorlach, M., C. G. Burd, and G. Dreyfuss. 1994. The mRNA poly(A)-binding protein: localization, abundance, and RNA-binding specificity. Exp. Cell Res. 211:400-407.
14. Guilford, P. J., D. L. Beck, and R. L. Forster. 1991. Influence of the poly(A) tail and putative polyadenylation signal on the infectivity of white clover mosaic potexvirus. Virology 182:61-67.
15. Hill, K. R., M. Hajjou. J. Y. Hu, and R. Raju. 1997. RNA-RNA recombination in Sindbis virus: roles of the 3′ conserved motif, poly(A) tail, and nonviral sequences of template RNAs in polymerase recognition and template switching. J. Virol. 71:2693-2704.
16. Hiti, A. L., A. R. Davis, and D. P. Nayak. 1981. Complete sequence analysis shows that the hemagglutinins of the H0 and H2 subtypes of human influenza virus are closely related. Virology 111:113-124.
17. Hofmann, M. A., and D. A. Brian. 1991. The 5′ end of coronavirus minus-strand RNAs contains a short poly(U) tract. J. Virol. 65:6331-6333.
18. Hofmann, M. A., P. B. Sethna, and D. A. Brian. 1990. Bovine coronavirus mRNA replication continues throughout persistent infection in cell culture. J. Virol. 64:4108-4114.
19. Hsue, B., and P. S. Masters. 1997. A bulged stem-loop structure in the 3′ untranslated region of the genome of the coronavirus mouse hepatitis virus is essential for replication. J. Virol. 71:7567-7578.
20. Huang, P., and M. M. Lai. 1999. Polypyrimidine tract-binding protein binds to the complementary strand of the mouse hepatitis virus 3′ untranslated region, thereby altering RNA conformation. J. Virol. 73:9110-9116.
21. Imataka, H., A. Gradi, and N. Sonenberg. 1998. A newly identified N-terminal amino acid sequence of human eIF4G binds poly(A)-binding protein and functions in poly(A)-dependent translation EMBO J. 17:7480-7489.
22. Jacobson, A. 1996. Poly(A) metabolism and translation: the closed-loop model, p. 451-480. In J. W. B. Hershey, M. B. Mathews, and N. Sonenberg (ed.), Translational control. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
23. Kim, Y. N., Y. S. Jeong, and S. Makino. 1993. Analysis of cis-acting sequences essential for coronavirus defective interfering RNA replication. Virology 197:53-63.
24. Lai, M. M. 1990. Coronavirus: organization, replication, and expression of genome. Annu. Rev. Microbiol. 44:303-333.
25. Lai, M. M. 1997. RNA-protein interactions in the regulation of coronavirus RNA replication and transcription. Biol. Chem. 378:477-81.
26. Lai, M. M. 1998. Cellular factors in the transcription and replication of viral RNA genomes: a parallel to DNA-dependent RNA transcription. Virology 244:1-12.
27. Lai, M. M., and D. Cavanagh. 1997. The molecular biology of coronaviruses. Adv. Virus Res. 48:1-100.
28. Le, H., R. L. Tanguay, M. L. Balasta, C. C. Wei, K. S. Browning, A. M. Metz, D. J. Goss, and D. R. Gallie. 1997. Translation initiation factors eIF-iso4G and eIF-4B interact with the poly(A)-binding protein and increase its RNA binding activity. J. Biol. Chem. 272:16247-16255.
29. Li, H. P., P. Huang, S. Park, and M. M. Lai. 1999. Polypyrimidine tract-binding protein binds to the leader RNA of mouse hepatitis virus and serves as a regulator of viral transcription. J. Virol. 73:772-777.
30. Li, H. P., X. Zhang, R. Duncan, L. Comai, and M. M. Lai. 1997. Heterogeneous nuclear ribonucleoprotein A1 binds to the transcription-regulatory region of mouse hepatitis virus RNA. Proc. Natl. Acad. Sci. USA 94:9544-9549.
31. Liao, C. L., and M. M. Lai. 1995. A cis-acting viral protein is not required for the replication of a coronavirus defective-interfering RNA. Virology 209: 428-436.
32. Lin, Y. J., and M. M. Lai. 1993. Deletion mapping of a mouse hepatitis virus defective interfering RNA reveals the requirement of an internal and discontiguous sequence for replication. J. Virol. 67:6110-6118.
33. Lin, Y. J., C. L. Liao, and M. M. Lai. 1994. Identification of the cis-acting signal for minus-strand RNA synthesis of a murine coronavirus: implications for the role of minus-strand RNA in RNA replication and transcription. J. Virol. 68:8131-8140.
34. Liu, Q., W. Yu, and J. L. Leibowitz. 1997. A specific host cellular protein binding element near the 3′ end of mouse hepatitis virus genomic RNA. Virology 232:74-85.
35. Mahajan. S., V. V. Dolja, and J. C. Carrington. 1996. Roles of the sequence encoding tobacco etch virus capsid protein in genome amplification: requirements for the translation process and a cis-active element. J. Virol. 70:4370-4379.
36. Makino, S., C. K. Shieh, L. H. Soe, S. C. Baker, and M. M. Lai. 1988. Primary structure and translation of a defective interfering RNA of murine coronavirus. Virology 166:550-560.
37. Makino, S., K. Yokomori, and M. M. Lai. 1990. Analysis of efficiently packaged defective interfering RNAs of murine coronavirus: localization of a possible RNA-packaging signal. J. Virol. 64:6045-6053.
38. Mendez, A., C. Smerdou, A. Izeta, F. Gebauer, and L. Enjuanes. 1996. Molecular characterization of transmissible gastroenteritis coronavirus detective interfering genomes: packaging and heterogeneity. Virology 217:495-507.
39. Novak, J. E., and K. Kirkegaard. 1994. Coupling between genome translation and replication in an RNA virus. Genes Dev. 8:1726-1737.
40. Parker, M. M., and P. S. Masters. 1990. Sequence comparison of the N genes of five strains of the coronavirus mouse hepatitis virus suggests a three domain structure for the nucleocapsid protein. Virology 179:463-168.
41. Penzes, Z., K. Tibbles. K. Shaw, P. Britton. T. D. Brown, and D. Cavanagh. 1994. Characterization of a replicating and packaged defective RNA of avian coronavirus infectious bronchitis virus. Virology 203:286-293.
42. Penzes, Z., C. Wroe, T. D. Brown, P. Britton, and D. Cavanagh. 1996. Replication and packaging of coronavirus infectious bronchitis virus defective RNAs lacking a long open reading frame. J. Virol. 70:8660-8668.
43. Pogue, G. P., C. C. Huntley, and T. C. Hall. 1994. Common replication strategies emerging from the study of diverse groups of positive-strand RNA viruses. Arch. Virol. Suppl. 9:181-194.
44. Proudfoot, N. 1991. Poly(A) signals. Cell 64:671-674.
45. Sachs, A. B., P. Sarnow, and M. W. Hentze. 1997. Starting at the beginning, middle, and end: translation initiation in eukaryotes. Cell 89:831-838.
46. Sarnow, P. 1989. Role of 3′-end sequences in infectivity of poliovirus transcripts made in vitro. J. Virol. 63:467-470.
47. Sawicki, S. G., and D. L. Sawicki. 1990. Coronavirus transcription: subgenomic mouse hepatitis virus applicative intermediates function in RNA synthesis. J. Virol. 64:1050-1056.
48. Sethna, P. B., S. L. Hung, and D. A. Brian. 1989. Coronavirus subgenomic minus-strand RNAs and the potential for mRNA replicons. Proc. Natl. Acad. Sci. USA 86:5626-5630.
49. Sonenberg, N. 1996. mRNA 5′ cap binding protein eIF4E and control of cell growth, p. 245-270. In J. W. B. Hershey, M. B. Mathews, and N. Sonenberg (ed.), Translational control. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
50. Sonenberg. N., M. A. Morgan, W. C. Merrick, and A. J. Shatkin. 1978. A polypeptide in eukaryotic initiation factors that crosslinks specifically to the 5′-terminal cap in mRNA. Proc. Natl. Acad. Sci. USA 75:4843-847.
51. Spector, D. H., and D. Baltimore. 1974. Requirement of 3′-terminal poly (adenylic acid) for the infectivity of poliovirus RNA. Proc. Natl. Acad. Sci. USA 71:2983-2987.
52. Tarun, S. Z. J., and A. B. Sachs. 1996. Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G. EMBO J. 15:7168-7177.
53. Tarun, S. Z. J., S. E. Wells, J. A. Deardorff, and A. B. Sachs. 1997. Translation initiation factor eIF4G mediates in vitro poly(A) tail-dependent translation. Proc. Natl. Acad. Sci. USA 94:9046-9051.
54. Todd, S., J. H. Nguyen, and B. L. Semler. 1995. RNA-protein interactions directed by the 3′ end of human rhinovirus genomic RNA. J. Virol. 69:3605-3614.
55. Tsai, C. H., C. P. Cheng, C. W. Peng, B. Y. Lin, N. S. Lin, and Y. H. Hsu. 1999. Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA. J. Virol. 73:2703-2709.
56. van der Most, R. G., P. J. Bredenbeek, and W. J. Spaan. 1991. A domain at the 3′ end of the polymerase gene is essential for encapsidation of coronavirus defective interfering RNAs. J. Virol. 65:3219-3226.
57. van der Most, R. G., W. Luytjes, S. Rutjes, and W. J. Spaan. 1995. Translation but not the encoded sequence is essential for the efficient propagation of the defective interfering RNAs of the coronavirus mouse hepatitis virus. J. Virol. 69:3744-3751.
58. van der Most, R. G., and W. J. Spaan. 1995. Coronavirus replication, transcription, and RNA recombination, p. 11-31. In S. J. Siddell (ed.). The Coronaviridae. Plenum, New York, N.Y.
59. Wells, S. E., P. E. Hillner, R. D. Vale, and A. B. Sachs. 1998. Circularization of mRNA by eukaryotic translation initiation factors. Mol. Cell 2:135-140.
60. White, K. A., J. B. Bancroft, and G. A. Mackie. 1992. Coding capacity determines in vivo accumulation of a defective RNA of clover yellow mosaic virus. J. Virol. 66:3069-3076.
61. Wickens, M. 1990. In the beginning is the end: regulation of poly(A) addition and removal during early development. Trends Biochem. Sci. 15:320-324.
62. Williams, G. D., R. Y. Chang, and D. A. Brian. 1999. A phylogenetically conserved hairpin-type 3′ untranslated region pseudoknot functions in coronavirus RNA replication. J. Virol. 73:8349-8355.
63. Yu, W., and J. L. Leibowitz. 1995. A conserved motif at the 3′ end of mouse hepatitis virus genomic RNA required for host protein binding and viral RNA replication. Virology 214:128-138.
64. Yu, W., and J. L. Leibowitz. 1995. Specific binding of host cellular proteins to multiple sites within the 3 end of mouse hepatitis virus genomic RNA. J. Virol. 69:2016-2023.