A specific host cellular protein binding element near the 3' end of mouse hepatitis virus genomic RNA

Virology

Volumn 232, Issue 1, 1997, Pages 74-85

  Liu, Qi ^a   Yu, Wei ^a   Leibowitz, Julian L ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ANIMAL CELL; ARTICLE; GENE MUTATION; MURINE HEPATITIS CORONAVIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA ANALYSIS; RNA PROBE; RNA REPLICATION; RNA STRUCTURE; VIRUS GENOME; VIRUS REPLICATION;

EID: 0030983657     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8553     Document Type: Article

References (41)

1. Andino R., Rieckhof G. E., Baltimore D. A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA. Cell. 63:1990;369-380.
2. Andino R., Rieckhof G. E., Achacoso P. L., Baltimore D. Poliovirus RNA synthesis utilizes an RNP complex formed around the 5′ end of viral RNA. EMBO J. 12:1993;3587-3598.
3. Baric R. S., Fu K., Schaad M. C., Stohlman S. A. Establishing a genetic recombination map for MHV-A59 complementation groups. Virology. 177:1990;646-656.
4. Brian D. A., Chang R. Y., Hofmann M. A., Sethna P. B. Role of subgenomic minus-strand RNA in coronavirus replication. Arch. Virol. (Suppl.). 9:1994;173-180.
5. de Groot R., Heijnen L., van der Most R. G., Spaan W. Homologous RNA recombination allows efficient introduction of site-specific mutations into the genome of coronavirus MHV-A59 via synthetic co-replicating RNAs. Arch. Virol. (Suppl.). 9:1994;221-230.
6. Blackwell J. L., Brinton M. A. BHK cell proteins that bind to the 3′ stem-loop structure of the west nile virus genome RNA. J. Virol. 69:1995;5650-5658.
7. Dildine S. L., Semler B. L. Conservation of RNA-protein interactions among picornaviruses. J. Virol. 66:1992;4364-4376.
8. Furuya T., Lai M. M. C. Three different cellular proteins bind to complementary sites on the 5′-end positive and 3′-end negative strands of mouse hepatitis virus RNA. J. Virol. 67:1993;7215-7222.
9. Furuya T., Macnaughton T. B., Monica N. L., Lai M. M. C. Natural evolution of coronavirus defective-interfering RNA involves RNA recombination. Virology. 194:1993;408-413.
10. Houser-Scott F., Baer M. L., Liem K. F. Jr., Cai J. M., Gehrke L. Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3′ untranslated region of alfalfa mosaic virus RNA 4. J. Virol. 68:1994;2194-2205.
11. Kim Y. N., Jeong Y. S., Makino S. Analysis of cis-acting sequence essential for coronavirus defective interfering RNA replication. Virology. 197:1993;53-63.
12. Kim Y. N., Makino S. Characterization of a murine coronavirus defective interfering RNA internal cis-acting replication signal. J. Virol. 69:1995;4963-4971.
13. Kusov Y., Weitz M., Dollenmeier G., Gauss-Muller V., Siegl G. RNA-protein interactions at the 3′ end of the Hepatitis A virus RNA. J. Virol. 70:1996;1890-1897.
14. Lai M. M. C. Coronavirus: Organization, replication and expression of genome. Annu. Rev. Microbiol. 44:1990;303-333.
15. Lai M. M. C., Baric R. S., Brayton P. R., Stohlman S. A. Characterization of leader RNA sequences on the virion and mRNAs of mouse hepatitis virus, a cytoplasmic RNA virus. Proc. Natl. Acad. Sci. USA. 81:1984;3626-3630.
16. Lai M. M. C., Baric R. S., Makino S., Keck J. C., Egbert J., Leibowitz J. L., Stohlman S. A. Recombination between nonsegmented RNA genomes of murine coronavirus. J. Virol. 56:1985;449-456.
17. Lai M. M. C., Stohlman S. A. RNA of mouse hepatitis virus. J. Virol. 26:1978;236-242.
18. Liao C. L., Lai M. M. C. RNA recombination in a coronavirus: recombination between viral genomic RNA and transfected RNA fragments. J. Virol. 66:1992;6117-6124.
19. Lee H. J., Shieh C. K., Gorbalenya A. E., Koonnin E. V., La Monica N., Tuler J., Bagdzhadzhyan A., Lai M. M. C. The complete sequence (22 kilobases) of murine coronavirus gene 1 encoding the putative proteases and RNA polymerase. Virology. 180:1991;567-582.
20. Leibowitz J. L., Wilhelmsen K. C., Bond C. W. The virus specific intracellular RNA species of two murine coronaviruses: MHV-A59 and MHV-JHM. Virology. 114:1981;39-51.
21. J. L. Leibowitz, P. W. Zoltick, K. V. Holmes, E. L. Oleszak, S. R. Weiss, 1990, Murine coronavirus RNA synthesis, New Aspects of Positive-Strand RNA Virus, 67, 74, Am. Soc. Microbiol. Washington, DC.
22. Lin Y. J., Lai M. M. C. Deletion mapping of a mouse hepatitis virus defective interfering RNA reveals the requirement for an internal and discontinuous sequence for replication. J. Virol. 67:1993;6110-6118.
23. Lin Y. J., Liao C. L., Lai M. M. C. Identification of the cis-acting signal for minus-strand RNA synthesis of a murine coronavirus: Implications for the role of minus-strand RNA in RNA replication and transcription. J. Virol. 68:1994;8131-8140.
24. Makino S., Joo M., Makino J. K. A system for study of coronavirus mRNA synthesis: A regulated, expressed subgenomic defective interfering RNA results from intergenic site insertion. J. Virol. 65:1991;6031-6041.
25. Makino S., Keck J. G., Stohlman S. A., Lai M. M. C. High-frequency RNA recombination of murine coronaviruses. J. Virol. 57:1986b;729-737.
26. Makino S., Lai M. M. C. High-frequency leader sequence switching during coronavirus defective interfering RNA replication. J. Virol. 63:1989;5285-5292.
27. Makino S., Shieh C. K., Soe L. H., Baker S. C., Lai M. M. C. Primary structure and translation of a defective interfering RNA of murine coronavirus. Virology. 166:1988;550-560.
28. Nakhasi H. L., Cao X. Q., Rouault T. A., Lui T. Y. Specific binding of host cell proteins to the 3′-terminal stem-loop structure of rubella virus negative-strand RNA. J. Virol. 65:1991;5961-5967.
29. Nakhasi H. L., Rouault T. A., Haile D. J., Liu T. Y., Klausner R. D. Specific high-affinity binding of host cell proteins to the 3′ region of rubella virus RNA. New Biol. 2:1990;255-264.
30. Pachuk C. J., Bredenbeek P. J., Zoltick P. W., Spaan W. J. M., Weiss S. R. Molecular cloning of the gene encoding the putative polymerase of mouse hepatitis coronavirus strain A59. Virology. 171:1989;141-148.
31. Parker M. M., Masters P. S. Sequence comparison of the N genes of five strains of the coronavirus mouse hepatitis virus suggests a three domain structure for the nucleocapsid protein. Virology. 179:1990;463-468.
32. Quadt R., Kao C. C., Browning K. S., Hershberger R. P., Ahlquist P. Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase. Proc. Natl. Acad. Sci. USA. 90:1993;1498-1502.
33. Sawicki S. G., Sawicki D. L. Coronavirus transcription: Subgenomic mouse hepatitis virus replicative intermediates function in RNA synthesis. J. Virol. 64:1990;1050-1056.
34. Sethna P. B., Hung S. L., Brian D. A. Coronavirus subgenomic minus-strand RNAs and the potential for mRNA replicons. Proc. Natl. Acad. Sci. USA. 86:1989;5626-5630.
35. Siddell S. G., Wege H., ter Meulen V. The biology of coronaviruses. J. Gen. Virol. 64:1983;761-776.
36. Spaan W. J., Rottier P. J., Horzinek M. C., van der Zeijst B. A. M. Isolation and identification of virus-specific mRNAs in cells infected with mouse hepatitis virus (MHV-A59). Virology. 108:1981;424-434.
37. Todd S., Nguyen J. H. C., Semler B. L. RNA-protein interactions directed by the 3′ end of human rhinovirus genomic RNA. J. Virol. 69:1995;3605-3614.
38. van der Most R. G., Heijnen L., Spaan J. M., de Groot R. J. Homologous RNA recombination allows efficient introduction of site-specific mutations into the genome of coronavirus MHV-A59 via synthetic co-replicating RNA. Nucleic Acids Res. 20:1992;3357-3371.
39. Wege H., Siddell S. G., ter Meulen V. The biology and pathogenesis of coronaviruses. Curr. Top. Microbiol. Immunol. 99:1982;165-200.
40. Yu W., Leibowitz J. L. Specific binding of host cellular proteins to multiple sites within the 3′ end of mouse hepatitis virus genomic RNA. J. Virol. 69:1995a;2016-2023.
41. Yu W., Leibowitz J. L. A conserved motif at the 3′ end of mouse hepatitis virus genomic RNA required for host protein binding and viral RNA replication. Virology. 214:1995b;128-138.