메뉴 건너뛰기




Volumn 43, Issue 1, 2000, Pages 116-136

Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2

(28)  Charlebois, Robert L a   Singh, Rama K b   Chan Weiher, Christina C Y a   Allard, Ghislaine a   Chow, Cynthia b   Confalonieri, Fabrice c   Curtis, Bruce b   Duguet, Michel c   Erauso, Gael d   Faguy, David e   Gaasterland, Terry f   Garrett, Roger A g   Gordon, Paul b   Jeffries, Alex C b   Kozera, Catherine b   Kushwaha, Neena a   Lafleur, Édith a   Medina, Nadine c   Peng, Xu g   Penny, Susanne L b   more..


Author keywords

Archaea; Bioinformatics; Comparative genomics; Sulfolobus Genome Project

Indexed keywords

AMINO ACID SYNTHESIS; BACTERIAL GENOME; CONTIG; GENE INSERTION SEQUENCE; GENOME ORGANIZATION; INTRON; OPERON; RIBOSOME PROTEIN; TRANSFER RNA;

EID: 0034007992     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g99-108     Document Type: Article
Times cited : (12)

References (50)
  • 2
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns, S.M., Delwiche, C.F., Palmer, J.D., and Pace, N.R. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. U.S.A. 93: 9188-9193.
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 3
    • 0032102006 scopus 로고    scopus 로고
    • Transcription and translation in archaea: A mosaic of eukaryal and bacterial features
    • Bell, S.D., and Jackson, S.P. 1998. Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features. Trends Microbiol. 6: 222-228.
    • (1998) Trends Microbiol. , vol.6 , pp. 222-228
    • Bell, S.D.1    Jackson, S.P.2
  • 4
    • 0031470387 scopus 로고    scopus 로고
    • Archaea and the prokaryoteto-eukaryote transition
    • Brown, J.R., and Doolittle, W.F. 1997. Archaea and the prokaryoteto-eukaryote transition. Microbiol. Mol. Biol. Rev. 61: 456-502.
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 456-502
    • Brown, J.R.1    Doolittle, W.F.2
  • 5
    • 0022636639 scopus 로고
    • Primary and secondary structural homologies between the HIS4 gene product of Saccharomyces cerevisiae and the hisIE and hisD gene products of Escherichia coli and Salmonella typhimurium
    • Bruni, C.B., Carlomagno, M.S., Formisano, S., and Paolella, G. 1986. Primary and secondary structural homologies between the HIS4 gene product of Saccharomyces cerevisiae and the hisIE and hisD gene products of Escherichia coli and Salmonella typhimurium. Mol. Gen. Genet. 203: 389-396.
    • (1986) Mol. Gen. Genet. , vol.203 , pp. 389-396
    • Bruni, C.B.1    Carlomagno, M.S.2    Formisano, S.3    Paolella, G.4
  • 7
    • 0024279308 scopus 로고
    • Structure and function of the Salmonella typhimurium and Escherichia coli K-12 histidine operons
    • Carlomagno, M.S., Chiariotti, L., Alifano, P., Nappo, A.G., and Bruni, C.B. 1988. Structure and function of the Salmonella typhimurium and Escherichia coli K-12 histidine operons. J. Mol. Biol. 203: 585-606.
    • (1988) J. Mol. Biol. , vol.203 , pp. 585-606
    • Carlomagno, M.S.1    Chiariotti, L.2    Alifano, P.3    Nappo, A.G.4    Bruni, C.B.5
  • 8
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • The C. elegans Sequencing Consortium. 1998. Genome sequence of the nematode C. elegans: A platform for investigating biology. Science, 282: 2012-2018.
    • (1998) Science , vol.282 , pp. 2012-2018
  • 10
    • 0022586990 scopus 로고
    • Gene structure in the histidine operon of Escherichia coli. Identification and nucleotide sequence of the hisB gene
    • Chiariotti, L., Nappo, A.G., Carlomagno, M.S., and Bruni, C.B. 1986. Gene structure in the histidine operon of Escherichia coli. Identification and nucleotide sequence of the hisB gene. Mol. Gen. Genet. 202: 42-47.
    • (1986) Mol. Gen. Genet. , vol.202 , pp. 42-47
    • Chiariotti, L.1    Nappo, A.G.2    Carlomagno, M.S.3    Bruni, C.B.4
  • 12
    • 0029150469 scopus 로고
    • Characterization of the five replication factor C genes of Saccharomyces cerevisiae
    • Cullmann, G., Fien, K., Kobayashi, R., and Stillman, B. 1995. Characterization of the five replication factor C genes of Saccharomyces cerevisiae. Mol. Cell. Biol. 15: 4661-4671.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 4661-4671
    • Cullmann, G.1    Fien, K.2    Kobayashi, R.3    Stillman, B.4
  • 14
    • 0032562283 scopus 로고    scopus 로고
    • Archaeal means and extremes
    • DeLong, E. 1998. Archaeal means and extremes. Science, 280: 542-543.
    • (1998) Science , vol.280 , pp. 542-543
    • DeLong, E.1
  • 15
    • 0026688008 scopus 로고
    • Histidine biosynthesis genes in Lactococcus lactis subsp. lactis
    • Delorme, C., Ehrlich, S.D., and Renault, P. 1992. Histidine biosynthesis genes in Lactococcus lactis subsp. lactis. J. Bacteriol. 174: 6571-6579.
    • (1992) J. Bacteriol. , vol.174 , pp. 6571-6579
    • Delorme, C.1    Ehrlich, S.D.2    Renault, P.3
  • 16
    • 0025630750 scopus 로고
    • Structure of an ATPase operon of an acidothermophilic archaebacterium, Sulfolobus acidocaldarius
    • Denda, K., Konishi, J., Hajiro, K., Oshima, T., Date, T., and Yoshida, M. 1990. Structure of an ATPase operon of an acidothermophilic archaebacterium, Sulfolobus acidocaldarius. J. Biol. Chem. 265: 21 509-21 513.
    • (1990) J. Biol. Chem. , vol.265 , pp. 21509-21513
    • Denda, K.1    Konishi, J.2    Hajiro, K.3    Oshima, T.4    Date, T.5    Yoshida, M.6
  • 17
    • 0027733934 scopus 로고
    • Cloning and sequencing of the gene encoding thermostable elongation factor 2 in Sulfolobus solfataricus
    • De Vendittis, E., Amatruda, M.R., Masullo, M., and Bocchini, V. 1993. Cloning and sequencing of the gene encoding thermostable elongation factor 2 in Sulfolobus solfataricus. Gene, 136: 41-48.
    • (1993) Gene , vol.136 , pp. 41-48
    • De Vendittis, E.1    Amatruda, M.R.2    Masullo, M.3    Bocchini, V.4
  • 18
    • 0031467141 scopus 로고    scopus 로고
    • Initiation of DNA replication in eukaryotic cells
    • Dutta, A., and Bell, S.P. 1997. Initiation of DNA replication in eukaryotic cells. Annu. Rev. Cell Dev. Biol. 13: 293-332.
    • (1997) Annu. Rev. Cell Dev. Biol. , vol.13 , pp. 293-332
    • Dutta, A.1    Bell, S.P.2
  • 19
    • 0030953880 scopus 로고    scopus 로고
    • Gene duplications in evolution of archaeal family B DNA polymerases
    • Edgell, D.R., Klenk, H.P., and Doolittle, W.F. 1997. Gene duplications in evolution of archaeal family B DNA polymerases. J. Bacteriol. 179: 2632-2640.
    • (1997) J. Bacteriol. , vol.179 , pp. 2632-2640
    • Edgell, D.R.1    Klenk, H.P.2    Doolittle, W.F.3
  • 20
    • 0028355575 scopus 로고
    • The evolution of the histidine biosynthetic genes in prokaryotes: A common ancestor for hisA and hisF genes
    • Fani, R., Liò, P., Chiarelli, I., and Bazzicalupo, M. 1994. The evolution of the histidine biosynthetic genes in prokaryotes: A common ancestor for hisA and hisF genes. J. Mol. Evol. 38: 489-495.
    • (1994) J. Mol. Evol. , vol.38 , pp. 489-495
    • Fani, R.1    Liò, P.2    Chiarelli, I.3    Bazzicalupo, M.4
  • 21
    • 0029619266 scopus 로고
    • Molecular evolution of the histidine biosynthetic pathway
    • Fani, R., Liò, P., and Lazcano, A. 1995. Molecular evolution of the histidine biosynthetic pathway. J. Mol. Evol. 41: 760-774.
    • (1995) J. Mol. Evol. , vol.41 , pp. 760-774
    • Fani, R.1    Liò, P.2    Lazcano, A.3
  • 24
    • 0027480113 scopus 로고
    • Sulfolobus acidocaldarius synthesizes UMP via a standard de novo pathway: Results of biochemical-genetic study
    • Grogan, D.W., and Gunsalus, R.P. 1993. Sulfolobus acidocaldarius synthesizes UMP via a standard de novo pathway: Results of biochemical-genetic study. J. Bacteriol. 175: 1500-1507.
    • (1993) J. Bacteriol. , vol.175 , pp. 1500-1507
    • Grogan, D.W.1    Gunsalus, R.P.2
  • 25
    • 0026684630 scopus 로고
    • Purification and properties of an ATPase from Sulfolobus solfataricus
    • Hochstein, L.I., and Stan-Lotter, H. 1992. Purification and properties of an ATPase from Sulfolobus solfataricus. Arch. Biochem. Biophys. 295: 153-160.
    • (1992) Arch. Biochem. Biophys. , vol.295 , pp. 153-160
    • Hochstein, L.I.1    Stan-Lotter, H.2
  • 28
    • 0027265544 scopus 로고
    • Cloning, primary structure, and regulation of the HIS7 gene encoding a bifunctional glutamine amidotransferase: Cyclase from Saccharomyces cerevisiae
    • Kuenzler, M., Balmelli, T., Egli, C.M., Paravicini, G., and Braus, G.H. 1993. Cloning, primary structure, and regulation of the HIS7 gene encoding a bifunctional glutamine amidotransferase: cyclase from Saccharomyces cerevisiae. J. Bacteriol. 175: 5548-5558.
    • (1993) J. Bacteriol. , vol.175 , pp. 5548-5558
    • Kuenzler, M.1    Balmelli, T.2    Egli, C.M.3    Paravicini, G.4    Braus, G.H.5
  • 29
    • 0028086499 scopus 로고
    • The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3'-terminal loop of 18 S rRNA is essential in yeast
    • Lafontaine, D., Delcour, J., Classer, A.L., Desgres, J., and Vandenhaute, J. 1994. The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3'-terminal loop of 18 S rRNA is essential in yeast. J. Mol. Biol. 241: 492-497.
    • (1994) J. Mol. Biol. , vol.241 , pp. 492-497
    • Lafontaine, D.1    Delcour, J.2    Classer, A.L.3    Desgres, J.4    Vandenhaute, J.5
  • 30
    • 0033605625 scopus 로고    scopus 로고
    • Mix and match in the tree of life
    • Lake, J.A., Jain, R., and Rivera, M.C. 1999. Mix and match in the tree of life. Science, 283: 2027-2028.
    • (1999) Science , vol.283 , pp. 2027-2028
    • Lake, J.A.1    Jain, R.2    Rivera, M.C.3
  • 31
    • 0029815789 scopus 로고    scopus 로고
    • Phylogenetic analysis of carbamoylphosphate synthetase genes: Complex evolutionary history includes an internal duplication within a gene which can root the tree of life
    • Lawson, F.S., Charlebois, R.L., and Dillon, J.R. 1996. Phylogenetic analysis of carbamoylphosphate synthetase genes: Complex evolutionary history includes an internal duplication within a gene which can root the tree of life. Mol. Biol. Evol. 13: 970-977.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 970-977
    • Lawson, F.S.1    Charlebois, R.L.2    Dillon, J.R.3
  • 32
    • 0022376199 scopus 로고
    • Cloning and characterization of the multifunctional his-3 gene of Neurospora crassa
    • Legerton, T.L., and Yanofsky, C. 1985. Cloning and characterization of the multifunctional his-3 gene of Neurospora crassa. Gene, 39: 129-140.
    • (1985) Gene , vol.39 , pp. 129-140
    • Legerton, T.L.1    Yanofsky, C.2
  • 33
    • 0030670627 scopus 로고    scopus 로고
    • RNA-protein interactions of an archaeal homotetrameric splicing endoribonuclease with an exceptional evolutionary history
    • Lykke-Andersen, J., and Garrett, R.A. 1997. RNA-protein interactions of an archaeal homotetrameric splicing endoribonuclease with an exceptional evolutionary history. EMBO J. 16: 6290-6300.
    • (1997) EMBO J. , vol.16 , pp. 6290-6300
    • Lykke-Andersen, J.1    Garrett, R.A.2
  • 35
    • 0032102260 scopus 로고    scopus 로고
    • Clamping down on clamps and clamp loaders. The eukaryotic replication factor C
    • Mossi, R., and Hübscher, U. 1998. Clamping down on clamps and clamp loaders. The eukaryotic replication factor C. Eur. J. Biochem. 254: 209-216.
    • (1998) Eur. J. Biochem. , vol.254 , pp. 209-216
    • Mossi, R.1    Hübscher, U.2
  • 36
    • 0027502720 scopus 로고
    • SSV1-encoded site-specific recombination system in Sulfolobus shibatae
    • Muskhelishvili, G., Palm, P., and Zillig, W. 1993. SSV1-encoded site-specific recombination system in Sulfolobus shibatae. Mol. Gen. Genet. 237: 334-342.
    • (1993) Mol. Gen. Genet. , vol.237 , pp. 334-342
    • Muskhelishvili, G.1    Palm, P.2    Zillig, W.3
  • 38
    • 0032455220 scopus 로고    scopus 로고
    • Post-transcriptional modifications of the archaeal hyperthermophile Sulfolobus solfataricus
    • Noon, K.R., Bruenger, E., and McCloskey, J.A. 1998. Post-transcriptional modifications of the archaeal hyperthermophile Sulfolobus solfataricus. J. Bacteriol. 180: 2883-2888.
    • (1998) J. Bacteriol. , vol.180 , pp. 2883-2888
    • Noon, K.R.1    Bruenger, E.2    McCloskey, J.A.3
  • 39
    • 0031587820 scopus 로고    scopus 로고
    • Archaeal genomes: An over-view
    • Olsen, G.J., and Woese, C.R. 1997. Archaeal genomes: An over-view. Cell, 89: 991-994.
    • (1997) Cell , vol.89 , pp. 991-994
    • Olsen, G.J.1    Woese, C.R.2
  • 40
    • 0032235371 scopus 로고    scopus 로고
    • Microbial genescapes: A prokaryotic view of the yeast genome
    • Ragan, M.A., and Gaasterland, T. 1998. Microbial genescapes: A prokaryotic view of the yeast genome. Microb. Comp. Genomics, 3: 219-235.
    • (1998) Microb. Comp. Genomics , vol.3 , pp. 219-235
    • Ragan, M.A.1    Gaasterland, T.2
  • 41
    • 0031595840 scopus 로고    scopus 로고
    • 0 ATPase from Methanosarcina mazei: Cloning of the 5′ end of the aha operon encoding the membrane domain and expression of the proteolipid in a membrane-bound form in Escherichia coli
    • 0 ATPase from Methanosarcina mazei: Cloning of the 5′ end of the aha operon encoding the membrane domain and expression of the proteolipid in a membrane-bound form in Escherichia coli J. Bacteriol. 180: 3448-3452.
    • (1998) J. Bacteriol. , vol.180 , pp. 3448-3452
    • Ruppert, C.1    Wimmers, S.2    Lemker, T.3    Muller, V.4
  • 42
    • 0001921046 scopus 로고    scopus 로고
    • Sequencing microbial genomes
    • Edited by R.L. Charlebois. American Society for Microbiology, Washington D.C.
    • Sensen, C.W. 1999. Sequencing microbial genomes. In Organization of the Prokaryotic Genome. Edited by R.L. Charlebois. American Society for Microbiology, Washington D.C. pp. 1-9.
    • (1999) Organization of the Prokaryotic Genome , pp. 1-9
    • Sensen, C.W.1
  • 47
    • 0028206477 scopus 로고
    • Sequencing and characterization of the ntp gene cluster for vacuolar-type Na(+)-translocating ATPase of Enterococcus hirae
    • Takase, K., Kakinuma, S., Yamato, L, Konishi, K., Igarashi, K., and Kakinuma, Y. 1994. Sequencing and characterization of the ntp gene cluster for vacuolar-type Na(+)-translocating ATPase of Enterococcus hirae. J. Biol. Chem. 269: 11 037-11 044.
    • (1994) J. Biol. Chem. , vol.269 , pp. 11037-11044
    • Takase, K.1    Kakinuma, S.2    Yamato, L.3    Konishi, K.4    Igarashi, K.5    Kakinuma, Y.6
  • 48
    • 0032523983 scopus 로고    scopus 로고
    • High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases
    • Wang, B., Jones, D.N., Kaine, B.P., and Weiss, M.A. 1998. High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases. Structure, 6: 555-569.
    • (1998) Structure , vol.6 , pp. 555-569
    • Wang, B.1    Jones, D.N.2    Kaine, B.P.3    Weiss, M.A.4
  • 49
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: The primary kingdoms
    • Woese, C.R., and Fox, G.E. 1977. Phylogenetic structure of the prokaryotic domain: The primary kingdoms. Proc. Natl. Acad. Sci. U.S.A. 74: 5088-5090.
    • (1977) Proc. Natl. Acad. Sci. U.S.A. , vol.74 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 50
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains archaea, bacteria, and eukarya
    • Woese, C.R., Kandler, O., and Wheelis, M.L. 1990. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eukarya. Proc. Natl. Acad. Sci. U.S.A. 87: 4576-4579.
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.