Completing the sequence of the Sulfolobus solfataricus P2 genome

Extremophiles

Volumn 2, Issue 3, 1998, Pages 305-312

  Sensen, Christoph W ^a   Charlebois, Robert L ^b   Chow, Cynthia ^c   Clausen, Ib Groth ^d   Curtis, Bruce ^c   Doolittle, W Ford ^c   Duguet, Michel ^e   Erauso, Gael ⁱ   Gaasterland, Terry ^g,h   Garrett, Roger A ^f   Gordon, Paul ^a   De Jong, Ineke Heikamp ⁱ   Jeffries, Alex C ^a   Kozera, Catherine ^c   Medina, Nadine ^e   De Moors, Anick ^b   Van Der Oost, John ⁱ   Phan, Hien ^f   Ragan, Mark A ^a   Schenk, Margaret E ^c   She, Qunxin ^f   Singh, Rama K ^a   Tolstrup, Niels ^d   more..

^a NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^b UNIVERSITY OF OTTAWA   (Canada)

^c DALHOUSIE UNIVERSITY   (Canada)

^d NOVO NORDISK A S   (Denmark)

^e UNIVERSITÉ PARIS SACLAY   (France)

^f UNIVERSITY OF COPENHAGEN   (Denmark)

^g ARGONNE NATIONAL LABORATORY   (United States)

^h THE UNIVERSITY OF CHICAGO   (United States)

ⁱ WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Archaea; Genomic sequence; MAGPIE; Sulfolobus solfataricus

Indexed keywords

BACTERIAL GENETICS; CARBOHYDRATE METABOLISM; GENE SEQUENCING; GENOME ANALYSIS; REPETITIVE DNA;

BASE SEQUENCE; CARBOHYDRATE METABOLISM; CHROMOSOME MAPPING; CLONING, MOLECULAR; DNA, ARCHAEAL; GENES, ARCHAEAL; GENOME; PHYLOGENY; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SOFTWARE; SULFOLOBUS;

ARCHAEA; BACTERIA (MICROORGANISMS); PROKARYOTA; SULFOLOBUS SOLFATARICUS;

EID: 17144471185     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007920050073     Document Type: Review

References (30)

1. Aagaard C, Leviev I, Aravalli RN, Forterre P, Prieur D, Garrett RA (1996) General vectors for archaeal hyperthermophiles: strategies based on a mobile intron and a plasmid. FEMS Microbiol Revs 18:93-104
2. Aravalli RN, Garrett RA (1997) Shuttle vectors for hyperthermophilic arehaea. Extremophiles 1:183-191
3. Baba T, Shinke R, Nanmori T (1994) Identification and characterization of clustered genes for thermostable xylan-degrading enzymes, βxylosidase and xylanase, of Bacillus stearothermophilus 21, Appl Environ Microbiol 60:2252-2258
4. Bonfield JK, Smith KF, Staden R (1995) A new DNA sequence assembly program. Nucleic Acids Res 23:4992-4999
5. Bull CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AR, Dougherty BA, Tomb JF, Adams MD, Reich CI, Overbeek R, Kirkness EF, Weinstock KG, Merrick JM, Glodek A, Scott JL, Geoghagen NSM, Weidman JF, Fuhrmann JL, Venter JC et al. (1996) Complete genome sequence of the methanogenic arehaeon Methanococcus jannaschii. Science 273:1058
6. Cannio R, Contursi P, Rossi M, Bartolucci S (1996) An autonomously replicating, transforming vector for Sulfolobus solfataricus: expression in Sulfolobus cells of a mesophilic drug resistance adapted to the higher temperature. Abstracts, First international congress on extremophiles. Estoril. Portugal, p 35
7. Charlebois RL, Sehalkwyk LC, Hofman JD, Doolittle WF (1991) Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2. J Mol Biol 222:509-524
8. Charlebois RL, Gaasterland T, Ragan MA, Doolittle WF, Sensen CW (1996) The Sulfolobus solfataricus P2 genome project. FEBS Lett 389:88-91
9. Charlebois RL, Sensen CW, Doolittle WF, Brown JR (1997) Evolutionary analysis of the his CGABdFDEH gene cluster from the arehaeon Sulfolobus solfataricus P2. J Bacteriol 179:4429-4432
10. De Rosa M, Gambacorta A, Bullock JD (1975) Extremely thermophilic acidophilic bacteria convergent with Sulfolobus acidocaldarius. J Gen Microbiol 86:156-164
11. De Rosa M, Gambacorta A, Noicolaus B, Giardinu P, Poerio E, Buonocore V (1984) Glucose metabolism in the extreme thermoacidophilic archaebacterium Sulfolobus solfataricus. Biochem J 224:407-414
12. De Smet KLA, Jamil S, Stoker NG (1993) Tropist 3: a cosmid vector for simplified mapping of both G-C rich and A-T rich genomic DNA. Gene 136:215-219
13. Elferink MGL, Schleper C, Zillig W (1996) Transformation of the extremely thermoacidophilic archaeon Sulfolobus solfataricus via a self-spreading vector. FEMS Microbiol Lett 137:31-35
14. Gaasterland T, Sensen CW (1996a) MAGPIE: automated genome interpretation. Trends Genet 12:76-78
15. Gaasterland T, Sensen CW (1996b) Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture. Biochimie (Paris) 78:302-310
16. Gaasterland T, Lobo J, Maltsev N, Chen G (1994) Assigning function to CDS through qualified query answering. In: Allman R, Brutlag D, Karp P, Lathrop P, Searls D (eds) Proceedings of the second international conference on intelligent systems for molecular biology. AAAI Press, Cambridge, pp 348-353
17. Kaine BP (1987) Intron-containing genes of S. solfataricus. J Mol Evol 25:248-254
18. Kaine BP, Gupta R, Woese CR (1983) Putative introns in tRNA genes of prokaryotes. PNAS 80:3309-3312
19. Keeling PJ, Klenk H.-P, Singh RK, Schenk ME, Sensen CW, Zillig W, Doolittle WF (in press) Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry. Extremophiles
20. Kengen SWM, Stams AJM, de Vos WM (1996) Sugar metabolism of hyperthermophiles. FEMS Microbiol Rev 18:119-137
21. Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, Quackenbush J, Lee NH, Sutton GG, Gill S, Kirkness EF, Dougherty BA, McKenney K, Adams MD, Loftus B, Venter JC et al. (1997) The complete genome sequence of the thermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature (Lond) 390:364-370
22. Maruta K, Mitsuzumi H, Nakada T, Kubota M, Chaen H, Fukuda S, Sugimoto T, Kurimoto M (1996) Cloning and sequencing of a cluster of genes encoding novel enzymes of trehalose biosynthesis from the thermophilic archaebacterium Sulfolobus acidocaldarius. Biochim Biophys Acta 1291:177-181
23. Mojica FJM, Ferrer C, Juez G, Rodriguez-Valera F (1995) Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax votcanii and could be involved in replicon partitioning. Mol Microbiol 17:85-93
24. Frisco A, Moracci M, Rossi M, Ciaramella M (1995) A gene encoding a putative membrane protein homologous to the major facilitator superfamily of transporters maps upstream of the beta-glycosidase gene in the archaeon Sulfolobus solfataricus. J Bacteriol 177:1614-1620
25. Reiter W-D, Palm P, Henschen A, Lottspeich F, Zillig W, Grampp B (1987) Identification and characterization of the genes encoding three structural proteins of the Sulfolobus virus-like particle SSV1. Mol Gen Genet 206:144-153
26. Schleper C, Roder R, Singer T, Zillig W (1994) An insertion element of the extremely thermophilic archaeon Sulfolobus solfataricus transposes into the endogenous β-galactosidase gene. Mol Gen Genet 243:91-96
27. Schönheit P, Schafer T (1995) Metabolism of hyperthermophiles. World J Microbiol Biotechnol 11:26-57
28. She Q, Phan H, Garrett RA, Albers S-V, Stedman, KM, Zillig W (in press) Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeon. Extremophiles
29. Sensen CW, Klenk HP, Singh RK, Allard G, Chan CC, Liu QY, Penny SL, Young F, Schenk ME, Gaasterland T, Doolittle WF, Ragan MA, Charlebois RL (1996) Organizational characteristics and information content of an archaeal genome: 156kb of sequence from Sulfolobus solfataricus P2. Mol Microbiol 22:175-191
30. Smith DR, Doucctte-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, Wierzbowski J, Gibson R, Jiwani N, Caruso A, Bush D, Safer H, Reeve JN et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum DH: functional analysis and comparative genomics. J Bacteriol 179:7135-7155