Impacts of molecular diagnostic technologies on plant disease management

Annual Review of Phytopathology

Volumn 38, Issue , 2000, Pages 207-239

  Martin, R R ^a   James, D ^a   Levesque, C A ^a  

^a HORTICULTURAL CROPS RESEARCH LABORATORY   (United States)

Author keywords

Disease diagnosis; Disease management; ELISA; Microarrays; Pathogen detection; PCR; Plant quarantine; Polymerase chain reaction

Indexed keywords

DISEASE DETECTION; ENZYME LINKED IMMUNOSORBENT ASSAY; MICROORGANISM DETECTION; MOLECULAR DIAGNOSIS; MONOCLONAL ANTIBODY; PLANT DISEASE CONTROL; POLYMERASE CHAIN REACTION; SERODIAGNOSIS;

ANIMALIA; BACTERIA (MICROORGANISMS); FUNGI; NEMATODA;

EID: 0033747039     PISSN: 00664286     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.phyto.38.1.207     Document Type: Review

References (185)

1. Some properties of grapevine leafroll-associated virus 2 and molecular organisation of the 3' region of the viral genome
2. Properties of grapevine virus D, a novel putative trichovims
3. Genotyping, gene genealogies and genomics bring fungal population genetics above ground
4. Polymerase chain reaction and its applications in fungal disease diagnosis
5. Detection and enumeration of a genetically modified fungus in soil environments by quantitative competitive polymerase chain reaction
6. The use of a polymerase chain reaction diagnostic test to detect and estimate the severity of stem base diseases in winter wheat
7. Phytophthora fragariae du framboisier et du fraisier - Methodes de depistage par la biologie moleculaire
8. Colorimetric PCR and ELISA diagnostics for the detection of Pseudocercosporella herpotrichoides in field samples
9. Polymerase chain reaction assays for the detection of Stagonospora nodorum and Septoria tritici in wheat
10. Microsystem technology in chemistry and life science
11. Detection and identification of Phytophthora fragariae Hickman by the polymerase chain reaction
12. Studies on 'corky rugose wood' of grapevine and on the diagnosis of grapevine virus B
13. Nomenclature of grapevine leafroll-associated putative closteroviruses
14. Properties of a filamentous virus isolated from grapevines affected by corky bark
15. Serum is more suitable than whole blood for diagnosis of systemic candidiasis by nested PCR
16. Ribosomal RNA sequence divergence within the Pythiaceae
17. UP-PCR analysis and ITS1 ribotyping of strains of Trichoderma and Gliocladium
18. A dipstick immunoassay for the specific detection of Phytophthora cinnamomi in soils
19. Exploitation of zoospore taxis in the development of a novel dipstick immunoassay for the specific detection of Phytophthora cinnamomi
20. Comparison of monoclonal antibodies and polymerase chain reaction assays for the typing of isolate belonging to the D and M serotypes of plum pox potyvirus
21. Detection of plum pox potyvirus and analysis of its molecular variability using immunocapture-PCR
22. Patterns of descent in clonal lineages and their multilocus fingerprints are resolved with combined gene genealogies
23. Grapevine virus A and grapevine virus D are serologically distantly related
24. Some properties of a hitherto undescribed filamentous virus of the grapevine
25. New approaches to the detection of microbial plant pathogens
26. Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses
27. A closterovirus from a stem pitting-diseased grapevine
28. Phylogenetic analysis of Phytophthora species based on ITS1 and ITS2 sequences of the ribosomal RNA gene repeat
29. Relatedness of Group I species of Phytophthora as assessed by randomly amplified polymorphic DNA (RAPDs) and sequences of ribosomal DNA
30. Evolutionary relationships among Phytophthora species deduced from rDNA sequence analysis
31. Characterization of grapevine rugose wood disease sources from Italy
32. A simple and efficient PCR method for the detection of Agrobacterium tumefaciens in plant tumours
33. Molecular recognition in the homing responses of zoosporic fungi, with special reference to Pythium and Phytophthora
34. Diagnosis and identification of plant pathogens
35. Detection of an arbuscular mycorrhizal fungus in roots of different plant species with the PCR
36. IPGRI's role in controlling virus diseases in fruit germplasm
37. Use of RAPD-PCR to isolate a species specific DNA probe for Phytophthora cinnamomi
38. Fusarium ear blight of wheat: The use of quantitative PCR and visual disease assessment in studies of disease control
39. Control of Phytophthora fragariae on strawberry and raspberry in Scotland by bait test
40. Plum pox virus
41. PCR amplification of species-specific DNA sequences can distinguish among Phytophthora species
42. Efficient cloning of cDNA from grapevine leafroll-associated virus 4 and demonstration of probe specificity by the viral antibody
43. Rapid detection and diagnosis of Septoria tritici epidemics in wheat using a polymerase chain reaction/PicoGreen assay
44. On the relationship between Kober stem grooving and grapevine virus A
45. Development of a quantitative immunodipstick assay for Phytophthora nicotianae
46. A primer pair for amplifying part of the genome of all potyvirids by RT-PCR
47. Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic mycobacterium DNA arrays
48. Detection of Phytophthora parasitica from soil and host tissue with a species-specific DNA probe
49. Cloned DNA probes for identification of Phytophthora parasitica
50. Identification of Phytophthora citrophthora with cloned DNA probes
51. Phylogeny of mycoplasma-like organisms (phytoplasmas): A basis for their classification
52. Identification of a cDNA clone specific to grapevine leafroll-associated virus 1, and occurrence of the virus in Australia
53. PCR: Applications and alternative technologies
54. Monoclonal antibodies in plant disease research
55. Identification of root rot fungi in nursery seedlings by nested multiplex PCR
56. The polymerase chain reaction and plant disease diagnosis
57. Improved protocols for obtaining fruit tree varieties
58. Use of monoclonal antibodies to characterize grapevine leafroll associated closteroviruses
59. Characterization of closterovirus-like particles associated with grapevine leafroll disease
60. PCR-based detection of Phytophthora fragariae in raspberry and strawberry roots
61. Development of a multiplex immunocapture RT-PCR assay for detection and differentiation of tomato and tobacco mosaic tobamoviruses
62. Identification and differentiation of Prunus virus isolates that cross-react with plum pox virus and apple stem pitting virus antisera
63. Isolation and partial characterization of a filamentous virus associated with peach mosaic disease
64. Specific detection of cherry mottle leaf virus using digoxigenin-labeled cDNA probes and RT-PCR
65. Comparison of ELISA and immunoblotting techniques for the detection of cherry mottle leaf virus
66. Elimination of apple stem grooving virus by chemotherapy and development of an immunocapture RT-PCR for rapid sensitive screening
67. Single primer pair designs that facilitate simultaneous detection and differentiation of peach mosaic virus and cherry mottle leaf virus
68. A simple and reliable protocol for the detection of apple stem grooving virus by RT-PCR and in a multiplex PCR assay
69. Quantitation of Phytophthora cinnamomi in avocado roots using a species-specific DNA probe
70. Screening of the closterovirus genome by degenerate primer-mediated polymerase chain reaction
71. Histology of the pathogenesis of Mycosphaerella graminicola in wheat
72. Occurrence of races in Phytophthora fragariae var rubi on raspberry
73. Cloning and detection of DNA from a nonculturable, plant pathogenic mycoplasma-like organism
74. 5S ribosomal RNA gene spacers as species-specific probes for eight species of Pythium
75. New perspectives towards analysing fungal communities in terrestrial environments
76. Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil
77. The use of nested primers in the polymerase chain reaction for the detection of Phytophthora fragariae and P cactorum in strawberry
78. Specific detection of Phytophthora nicotianae using the polymerase chain reaction and primers based on the DNA sequence of its elicitin gene ParA1
79. Detection and quantification of seed-borne Septoria nodorum in naturally infected grains of wheat with polyclonal ELISA
80. Zoospore chemotaxis of two mangrove strains of Halophytophthora vesicula from Mai Po
81. Phylogeny of five fungus-like protoctistan Phytophthora spp., inferred from the internal transcribed spacers of ribosomal DNA
82. Detection of Phytophthora species by oligonucleotide hybridization to amplified ribosomal DNA spacers
83. Identification of some oomycetes by reverse dot blot hybridization
84. Development of a species-specific probe for Pythium ultimum using amplified ribosomal DNA
85. Specific PCR based detection of Phytophthora medicaginis using the intergenic spacer region of the ribosomal DNA
86. Peronospora sparsa on cultivated Rubus arcticus and its detection by PCR based on ITS sequences
87. Nucleotide sequence of the 3' terminal two-thirds of the grapevine leafroll-associated virus-3 genome reveals a typical monopartite closterovirus
88. The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection and disease diagnosis
89. Improved RNA extraction from woody plants for the detection of viral pathogens by reverse transcription-polymerase chain reaction
90. Molecular recognition of Phytophthora contamination in water pollutions
91. Comparison of polymerase reaction based methods with plating on media to detect and identify verticillium wilt pathogens of potato
92. Foveavirus, a new plant virus genus
93. Vitivirus, a new genus of plant viruses
94. Virus certification of grapevines
95. The population genetics of fungi: Tools and techniques
96. High-throughput microarray-based enzyme-linked immunosorbent assay (ELISA)
97. Rupestris stem pitting associated virus-1 is consistently detected in grapevines that are infected with rupestris stem pitting
98. Nucleotide sequence and genomic structure of grapevine rupestris stem pitting associated virus-1 reveal similarities to apple stem pitting virus
99. Molecular diagnosis of plant disease
100. Grapevine virus A: Nucleotide sequence, genome organization, and relationship in the Trichovirus genus
101. Field results with a diagnostic system for the identification of Septoria nodorum and Septoria tritici
102. Why oomycetes have not stopped being fungi
103. Serological detection of grapevine associated closteroviruses in infected grapevine cultivars
104. An improved method for the detection of Tospoviruses using the polymerase chain reaction
105. Purificaiton and properties of closterovirus-like particles associated with grapevine corky bark disease
106. Grapevine leafroll virus, a possible member of the Closteroviruses
107. Development of PCR-based diagnostics for soil borne plant pathogens
108. Sour cherry strain of plum pox potyvirus (PPV): Molecular and serological evidence for a new subgroup of PPV strains
109. Development and use of a PCR assay to detect Rhizoctonia cerealis, the cause of sharp eyespot in wheat
110. Differentiation and quantification of the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis using a PCR assay
111. Detection and quantification of Fusarium culmorum and Fusarium graminearum in cereals using PCR assays
112. Races of the red stele root rot fungus, Phytophthora fragariae, in Nova Scotia
113. Application of the PCR technique to detect Phytophthora infestans in potato tubers and leaves
114. Simultaneous detection and typing of plum pox potyvirus (PPV) isolates by heminested-PCR and PCR-ELISA
115. Use of molecular methods for the detection and identification of wood decay fungi
116. Characterization of border species among Pythiaceae: Several Pythium isolates produce elicitins, typical proteins from Phytophthora spp
117. Development of a PCR assay to detect Fusarium poae in wheat
118. Transmission of grapevine leafroll-associated closteroviruses by Pseudococcus longispinus and P. calceolariae
119. Immunoenzymatic detection of PCR products for the identification of phytoplasmas in plants
120. Specific detection of D- and M-isolates of plum pox virus by immunoenzymatic determination of PCR products
121. Molecular diagnosis and epidemiology of fungal infections
122. PCR amplification of ribosomal DNA for species identification in the plant pathogen genus Phytophthora
123. Production of species-specific monoclonal antibodies that react with surface components on zoospores and cysts of Phytophthora nicotianae
124. Transmission of grapevine leafroll disease and an associated closterovirus to healthy grapevine by the mealybug
125. Rapid detection of a plant virus by solution hybridization using oligonucleotide probes
126. Use of degenerate primers for partial sequencing and RT-PCR-based assays of grapevine leafroll-associated viruses 4 and 5
127. Development of a sensitive colorimetric-PCR assay for detection of viruses in woody plants
128. Development of a detection system for viruses of woody plants based on PCR analysis of immobilized virions
129. A comparison between serological and biological assays in detecting grapevine leafroll associated viruses
130. Role of EPPO in controlling plant viruses in temperate fruit crops
131. The nucleotide sequence and genomic organization of grapevine virus B
132. Detection of grapevine leafroll-associated closterovirus III by molecular hybridization
133. Use of degenerate primers in a RT-PCR assay for the identification and analysis of some filamentous viruses, with special reference to clostero- and vitiviruses of the grapevine
134. Nepoviruses
135. A combined biological and enzymatic amplification (BIO-PCR) technique to detect Pseudomonas syringae pv. Phaseolicola in bean seed extracts
136. Quantitative monitoring of gene expression pattern with a complementing DNA microarray
137. Detection and quantification of Phytophthora species which are associated with root-rot diseases in European deciduous forests by species-specific polymerase chain reaction
138. Critical review of identification techniques for Armillaria spp. and Heterobasidium annosum root and butt rot diseases
139. The differentiation of Phytophthora species that are pathogenic on potatoes by an asymmetric PCR combined with single-strand conformation polymorphism analysis
140. Detection of phytoplasma infections in plants
141. Detection and identification of fruit tree phytoplasmas by PCR amplification of ribosomal and nonribosomal DNA
142. Phylogenic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA
143. Simultaneous TD/RT-PCR detection of cymbidium mosaic potexvirus and odontoglossum ringspot tobamovirus with a single pair of primers
144. Sensitive detection of potato spindle tuber and temperate fruit tree viroids by reverse transcription-polymerase chain reaction-probe capture hybridization
145. Specific and sensitive detection of Phytophthora fragariae var. rubi in raspberry roots by PCR amplification
146. Analysis of RFLPs in nuclear and mitochondrial DNA and the taxonomy of Phytophthora fragariae
147. Validation of diagnostic methods for diseases such as potato ring rot and potato brown rot for use within the European Union
148. Development of a rapid on-site test for the presymptomatic detection of Septoria tritici and Septoria nodorum
149. The role of NAPPO in fruit crop virus-testing and certification
150. Generation of cDNAs specific to lettuce infectious yellows closterovirus and other whitefly-transmitted viruses by RT-PCR and degenerate oligonucleotide primers corresponding to the closterovirus gene encoding the heat shock protein 70 homolog
151. Development of PCR primers from internal transcribed spacer region 2 for detection of Phytophthora species infecting potatoes
152. Application of a PCR-based test for detection of potato late blight and pink rot in tubers
153. Use of monoclonal antibodies in plant pathology
154. Rapid detection of Phytophthora infestans in late blight-infected potato and tomato using PCR
155. Refinement of PCR-detection of Fusarium avenaceum and evidence from DNA marker studies for phenetic relatedness to Fusarium tricinctum
156. A gene-for-gene model to explain interactions between cultivars of strawberry and races of Phytophthora fragariae var. fragariae
157. Direct DNA extraction for PCR-mediated assays of soil organisms
158. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
159. Specific detection of Erwinia carotovora subsp. atroseptica with a digoxigenin-labeled DNA probe
160. An assessment of nested PCR to detect phytoplasmas in imported dormant buds and intemodal tissues of quarantined tree fruit germplasm
161. Plant introduction and quarantine: The need for both
162. A survey of Tapesia yallundae and Tapesia acuformis in UK winter wheat crops using a polymerase chain reaction diagnostic assay
163. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
164. Identity of a Phytophthora species attacking raspberry in Europe and North America
165. Identification of Erwinia stewartii by a ligase chain reaction assay
166. Incidence of cymbidium mosaic and odontoglossum ringspot viruses and their significance in orchid cultivation in Singapore
167. Nucleotide sequence and RT-PCR detection of a virus associated with grapevine rupestris stem-pitting disease
168. A small scale procedure for extracting nucleic acids from woody plants infected with various pathogens for PCR assay
169. Nucleotide sequence and genome organization of grapevine leafroll-associated virus-2 are similar to beet yellows virus, the closterovirus type member
170. Characterization and serological detection of four closterovirus-like particles associated with leafroll disease of grapevine
171. Production and characterization of monoclonal antibodies specific to closterovirus-like particles associated with grapevine leafroll disease