The population genetics of fungi: Tools and techniques

Phytopathology

Volumn 87, Issue 4, 1997, Pages 448-453

  McDonald, Bruce A ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGI;

EID: 0030901723     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.1997.87.4.448     Document Type: Conference Paper

References (49)

1. Anderson, J. B., and Kohn, L. M. 1995. Clonality in soilborne, plant-pathogenic fungi. Annu. Rev. Phytopathol. 33:369-391.
2. Anderson, J. B., Kohn, L. M., and Leslie, J. F. 1992. Genetic mechanisms in fungal adaptation. Pages 73-98 in: The Fungal Community: Its Organization and Role in the Ecosystem. G. C. Carroll and D. T. Wicklow, eds. Marcel Dekker, Inc., New York.
3. Appel, D. J., and Gordon, T. R. 1996. Relationships among pathogenic and nonpathogenic isolates of Fusarium oxysporum based on the partial sequence of the intergenic spacer region of the ribosomal DNA. Mol. Plant-Microbe Interact. 9:125-138.
4. Boeger, J. M., Chen, R. S., and McDonald, B. A. 1993. Gene flow between geographic populations of Mycosphaerella graminicola (anamorph Septoria tritici) detected with RFLP markers. Phytopathology 83:1148-1154.
5. Boehm, E. W. A., Ploetz, R. C., and Kistler, H. C. 1994. Statistical analysis of electrophoretic karyotype variation among vegetative compatibility groups of Fusarium oxysporum f, sp. cubense. Mol. Plant-Microbe Interact. 7:196-207.
6. Brown, J. K. M., O'dell, M., Simpson, C. G., and Wolfe, M. S. 1990. The use of DNA polymorphisms to test hypotheses about a population of Erysiphe graminis f. sp. hordei. Plant Pathol. 39:391-401.
7. Burdon, J. J. 1993. The structure of pathogen populations in natural plant communities. Annu. Rev. Phytopathol. 31:305-323.
8. Burdon, J. J., and Jarosz, A. M. 1992. Temporal variation in the racial structure of flax rust (Melampsora lini) populations growing on natural stands of wild flax (Linum marginale): Local versus metapopulation dynamics. Plant Pathol. 41:165-179.
9. Chen, D., Zeigler, R. S., Leung, H., and Nelson, R. J. 1995. Population structure of Pyricularia grisea at two screening sites in the Philippines. Phytopathology 85:1011-1020.
10. Chen, R. S., Boeger, J. M., and McDonald, B. A. 1994. Genetic stability in a population of a plant pathogenic fungus over time. Mol. Ecol. 3: 209-218.
11. Chen, R. S., and McDonald, B. A. 1996. Sexual reproduction plays a major role in the genetic structure of populations of the fungus Mycosphaerella graminicola. Genetics 142:1119-1126.
12. Drenth, A., Goodwin, S. B., Fry, W. E., and Davidse, L. C. 1993. Genotypic diversity of Phytophthora infestans in the Netherlands revealed by DNA polymorphisms. Phytopathology 83:1087-1092.
13. Drenth, A., Whisson, S. C., Maclean, D. J., Irwin, J. A. G., Obst, N. R., and Ryley, M. J. 1996. The evolution of races of Phytophthora sojae in Australia. Phytopathology 86:163-169.
14. Fisher, R. A. 1930. The Genetical Theory of Natural Selection. 1st ed. Clarendon Press, Oxford.
15. Goodwin, S. B., Cohen, B. A., and Fry, W. E. 1994. Panglobal distribution of a single clonal lineage of the Irish potato famine fungus. Proc. Natl. Acad. Sci. USA 91:11591-11595.
16. Goodwin, S. B., Sujkowski, L. S., and Fry, W. E. 1995. Rapid evolution of pathogenicity within clonal lineages of the potato late blight disease fungus. Phytopathology 85:669-676.
17. Gordon, T. R., Okamoto, D., and Milgroom, M. G. 1992. The structure and interrelationship of fungal populations in native and cultivated soils. Mol. Ecol. 1:241-249.
18. Groppe, K., Sanders, I., Wiemken, A., and Boiler, T. 1995. A microsatellite marker for studying the ecology and diversity of fungal endophytes (Epichloe spp.) in grasses. Appl. Environ. Microbiol. 61:3943-3949.
19. Hartl, D. L., and Clark, A. G. 1989. Principles of Population Genetics. 2nd ed. Sinauer Associates, Sunderland, MA.
20. Jarosz, A. M., and Burdon, J. J. 1991. Host-pathogen interactions in natural populations of Linum marginale and Melampsora lini: II. Local and regional variation in patterns of resistance and racial structure. Evolution 45:1618-1627.
21. Kistler, H. C., and Miao, V. P. W. 1992. New modes of genetic change in filamentous fungi. Annu. Rev. Phytopathol. 30:131-152.
22. Kohli, Y., Brunner, L. J., Yoell, H., Milgroom, M. G., Anderson, J. B., Morrall, R. A. A., and Kohn, L. M. 1995. Clonal dispersal and spatial mixing in populations of the plant pathogenic fungus, Sclerotinia sclerotiorum. Mol. Ecol. 4:69-77.
23. Kohli, Y., Morrall, A. A., Anderson, J. B., and Kohn, L. M. 1992. Local and trans-Canadian clonal distribution of Sclerotinia sclerotiorum on canola. Phytopathology 82:875-880.
24. Kohn, L. M. 1992. Developing new characters for fungal systematics: An experimental approach for determining the rank of resolution. Mycologia 84:139-153.
25. Kurdyla, T. M., Guthrie, P. A. I., McDonald, B. A., and Appel, D. N. 1995. RFLPs in mitochondrial and nuclear DNA indicate low levels of genetic diversity in the oak wilt pathogen Ceratocystis fagacearum. Curr. Genet. 27:373-378.
26. Leslie, J. F. 1993. Fungal vegetative compatibility. Annu. Rev. Phytopathol. 31:127-151.
27. Leung, H., Nelson, R. J., and Leach, J. E. 1993. Population structure of plant pathogenic fungi and bacteria. Adv. Plant Pathol. 10:157-205.
28. Lynch, M., and Milligan, B. G. 1994. Analysis of population genetic structure with RAPD markers. Mol. Ecol. 3:91-99.
29. MacNish, G. C., and Neate, S. M. 1996. Rhizoctonia bare patch of cereals: An Australian perspective. Plant Dis. 80:965-971.
30. McDermott, J. M., and McDonald, B. A. 1993. Gene flow in plant pathosystems. Annu. Rev. Phytopathol. 31:353-373.
31. McDermott, J. M., McDonald, B. A., Allard, R. W., and Webster, R. K. 1989. Genetic variability for pathogenicity, isozyme, ribosomal DNA and colony color variants in populations of Rhynchosporium secalis. Genetics 122:561-565.
32. McDonald, B. A., and Martinez, J. P. 1990. DNA restriction fragment length polymorphisms among Mycosphaerella graminicola (anamorph Septoria tritici) isolates collected from a single wheat field. Phytopathology 80:1368-1373.
33. McDonald, B. A., and McDermott, J. M. 1993. The population genetics of plant pathogenic fungi. BioScience 43:311-319.
34. McDonald, B. A., McDermott, J. M., Goodwin, S. B., and Allard, R. W. 1989. The population biology of host-pathogen interactions. Annu. Rev. Phytopathol. 27:77-94.
35. McDonald, B. A., Mundt, C. C., and Chen, R. S. 1996. The role of selection on the genetic structure of pathogen populations: Evidence from field experiments with Mycosphaerella graminicola on wheat. Euphytica 92:73-86.
36. McDonald, B. A., Miles, J., Nelson, L. R., and Pettway, R. E. 1994. Genetic variability in nuclear DNA in field populations of Stagonospora nodorum. Phytopathology 84:250-255.
37. McDonald, B. A., Pettway, R. E., Chen, R. S., Boeger, J. M., and Martinez, J. P. 1995. The population genetics of Septoria tritici (teleomorph Mycosphaerella graminicola). Can. J. Bot. 73(Suppl.):S292-S301.
38. Milgroom, M. G. 1995. Analysis of population structure in fungal plant pathogens. Pages 213-230 in: Disease Analysis Through Genetics and Biotechnology: Interdisciplinary Bridges to Improved Sorghum and Millet Crops. J. F. Leslie and R. A. Frederiksen, eds. Iowa State University Press, Ames.
39. Mills, D., and McCluskey, K. 1990. Electrophoretic karyotypes of fungi: The new cytology. Mol. Plant-Microbe Interact. 3:351-357.
40. Paran, I., and Michelmore, R. W. 1993. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Genet. 85:985-993.
41. Peever, T. L., and Milgroom, M. G. 1994. Genetic structure of Pyrenophora teres populations determined with random amplified polymorphic DNA markers. Can. J. Bot. 72:915-923.
42. Rosewich, U. L., and McDonald, B. A. 1994. DNA fingerprinting in fungi. Methods Mol. Cell. Biol. 5:41-48.
43. Smith, M. L., Bruhn, J. N., and Anderson, J. B. 1994. Relatedness and spatial distribution of Armillaria genets infecting red pine seedlings. Phytopathology 84:822-829.
44. Watt, W. B. 1994. Allozymes in evolutionary genetics: Self-imposed burden or extraordinary tool? Genetics 136:11-16.
45. Weir, B. S. 1995. Genetic Data Analysis II. Sinauer Associates, Sunderland, MA.
46. Welz, H. G., Kohler, W., and Leonard, K. J. 1994. Isozyme variation within and among pathogenic races of Cochliobolus carbonum on corn in North Carolina. Phytopathology 84:31-38.
47. Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A., and Tingey, S. V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531-6535.
48. Wolfe, M. S., and Caten, C. E., eds. 1987. Populations of Plant Pathogens: Their Dynamics and Genetics. Blackwell Scientific Publications, Oxford.
49. Zeigler, R. S., Cuoc, L. X., Scott, R. P., Bernardo, M. A., Chen, D. H., Valent, B., and Nelson, R. J. 1995. The relationship between lineage and virulence in Pyricularia grisea in the Philippines. Phytopathology 85: 443-451.