Nucleotide sequence of the 3'-terminal two-thirds of the grapevine leafroll-associated virus-3 genome reveals a typical monopartite closterovirus

Journal of General Virology

Volumn 79, Issue 5, 1998, Pages 1299-1307

  Ling, K S ^a   Zhu, H Y ^a   Drong, R F ^b   Slightom, J L ^b   McFerson, J R ^c   Gonsalves, D ^a  

^a New York State Agricultural Experiment Station   (United States)

^b PFIZER INC   (United States)

^c Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; COMPLEMENTARY DNA; HEAT SHOCK PROTEIN 70; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; CLOSTEROVIRUS; GENE SEQUENCE; MOLECULAR CLONING; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; VIRUS GENOME;

ALEYRODIDAE; APHIDIDAE; BETA VULGARIS SUBSP. VULGARIS; CITRUS; CITRUS TRISTEZA; CLOSTEROVIRUS; GRAPEVINE LEAFROLL-ASSOCIATED VIRUS 3; LACTUCA; LETTUCE INFECTIOUS YELLOWS VIRUS; RNA VIRUSES; STAPHYLOCOCCUS PHAGE 3A; VITIS;

EID: 0031921314     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-79-5-1299     Document Type: Article

References (46)

1. Agranovsky, A. A. (1996). Principles of molecular organization, expression, and evolution of closteroviruses: over the barriers. Advances in Virus Research 47, 119-158.
2. Agranovsky, A. A., Boyko, V. P., Karasev, A. V., Koonin, E. V. & Dolja, V. V. (1991). Putative 65-kDa protein of beet yellows closterovirus is a homologue of HSP70 heat shock proteins. Journal of Molecular Biology 217, 603-610.
3. Agranovsky, A. A., Koonin, E. V., Boyko, V. P., Maiss, E., Frotschl, R., Lunica, N. A. & Atabekov, J. G. (1994). Beet yellows closterovirus: complete genome structure and identification of a papain-like thiol protease. Virology 198, 311-324.
4. Belli, G., Fortusini, A., Casati, P., Belli, L., Bianco, P. A. & Prati, S. (1994). Transmission of a grapevine leafroll associated closterovirus by the scale insect Pulvinaria vitis L. Rivista di Patologia Vegetale 4, 105-108.
5. Bork, P., Sander, C. & Valencia, A. (1992). An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins. Proceedings of the National Academy of Sciences, USA 89, 7290-7294.
6. Boscia, D., Greif, C., Gugerli, P., Martelli, G. P., Walter, B. & Gonsalves, D. (1995). Nomenclature of grapevine leafroll-associated putative closterovirus. Vitis 34, 171-175.
7. Cabaleiro, C. & Segura, A. (1997). Some characteristics of the transmission of grapevine leafroll associated virus 3 by Planococcus citri Risso. European Journal of Plant Pathology 103, 373-378.
8. Choueiri, E., Boscia, D., Digiaro, M., Castellano, M. A. & Martelli, G. P. (1996). Some properties of a hitherto undescribed filamentous virus of the grapevine. Vitis 35, 1-3.
9. Coffin, R. S. & Coutts, R. H. A. (1993). The dosteroviruses, capilloviruses and other similar viruses: a short review. Journal of General Virology 74, 1475-1483.
10. Dayhoff, M. O. (1979). Atlas of Protein Sequence and Structure, vol. 5, suppl. 3. Washington, DC: National Biomedical Research Foundation.
11. Dolja, V. V., Karasev, A. V. & Koonin, E. V. (1994). Molecular biology and evolution of dosteroviruses: sophisticated build-up of large RNA genomes. Annual Review of Phytopathology 32, 261-285.
12. Eastwell, K. C. & Bernardy, M. G. (1996). Association of high molecular weight double-stranded RNA with little cherry disease. Canadian Journal of Plant Pathology 18, 203-208.
13. Engelbrecht, D. J. & Kasdorf, G. G. F. (1990). Transmission of grapevine leafroll disease and associated dosteroviruses by the vine mealybug Planococcus ficus. Phytophylactica 22, 341-346.
14. Felsenstein, J. (1989). PHYLIP-phylogeny inference package (version 3.2). Cladistics 5, 164-166.
15. Goszczynski, D. E., Kasdorf, G. G. F., Pietersen, G. & Van Tonder, H. (1996). Grapevine leafroll-associated virus 2 (GLRaV-2) - mechanical transmission, purification, production and properties of antisera, detection by ELISA. South African journal for Enology and Viticulture 17, 15-26.
16. Goheen, A. C. (1970). Grape leafroll. In Virus Diseases of Small Fruits and Grapevines, pp. 209-219. Edited by N. W. Frazier. Berkeley: Division of Agricultural Sciences, University of California.
17. Golino, D. A. (1992). The Davis grapevine virus collection. American Journal of Enology and Viticulture 43, 200-205.
18. Golino, D. A., Sim, S. T. & Rowhani, A. (1995). Transmission studies of grapevine leafroll associated virus and grapevine corky bark associated virus by the obscure mealybug. American Journal of Enology and Viticulture 46, 408.
19. Habili, N., Fazeli, C. F., Ewart, A., Hamilton, R., Cirami, R., Saldarelli, P. Minafra, A. & Rezaian, M. A. (1995). Natural spread and molecular analysis of grapevine leafroll-assodated virus 3 in Australia. Phytopathology 85, 1418-1422.
20. Hodgman, T. C. (1988). A new superfamily of replicative proteins. Nature 333, 22-23 (erratum 578).
21. Hu, J. S., Gonsalves, D., Boscia, D. & Namba, S. (1990a). Use of monoclonal antibodies to characterize grapevine leafroll associated dosteroviruses. Phytopathology 80, 920-925.
22. Hu, J. S., Gonsalves, D. & Teliz, D. (1990b). Characterization of closterovirus-like particles associated with grapevine leafroll disease. Journal of Phytopathology 128, 1-14.
23. Jelkmann, W. (1995). Cherry virus A: cDNA cloning of dsRNA, nucleotide sequence analysis and serology reveal a new plant capillovirus in sweet cherry. Journal of General Virology 76, 2015-2024.
24. Jelkmann, W., Fechtner, B. & Agranovsky, A. A. (1997). Complete genome structure and phylogenetic analysis of little cherry virus, a mealybug-transmissible closterovirus. Journal of General Virology 78, 2067-2071.
25. Karasev, A. V., Nikolaeva, O. V., Koonin, E. V., Gumpf, D. J. & Garnsey, S. M. (1994). Screening of the closterovirus genome by degenerate primer-mediated polymerase chain reaction. Journal of General Virology 75, 1415-1422.
26. Karasev, A. V., Boyko, V. P., Gowda, S., Nikolaeva, O. V., Hilf, M. E., Koonin, E. V., Niblett, C. L., Cline, K., Gumpf, D. J., Lee, R. F., Garnsey, S. M., Lewandowski, D. J. & Dawson, W. O. (1995). Complete sequence of the citrus tristeza virus RNA genome. Virology 208, 511-520.
27. Karasev, A. V., Nikolaeva, O. V., Mushegian, A. R., Lee, R. F. & Dawson W. O. (1996). Organization of the 3′-terminal half of beet yellow stunt virus genome and implications for the evolution of closteroviruses. Virology 221, 199-207.
28. Keim-Konrad, R. & Jelkmann, W. (1996). Genome analysis of the 3′-terminal part of the little cherry disease associated dsRNA reveals a monopartite clostero-like virus. Archives of Virology 141, 1437-1451.
29. Kim, K. S., Gonsalves, D., Teliz, D. & Lee, K. W. (1989). Ultrastructure and mitochondrial vesiculation associated with closterovirus-like particles in leafroll diseased grapevines. Phytopathology 79, 357-360.
30. Klaassen, V. A., Boeshore, M. L., Koonin, E. V., Tian, T. & Falk, B. W. (1995). Genome structure and phylogenetic analysis of lettuce infectious yellows virus, a whitefly-transmitted, bipartite closterovirus. Virology 208, 99-110.
31. Koonin, E. V. & Dolja, V. V. (1993). Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences. Critical Reviews in Biochemistry and Molecular Biology 28, 375-430.
32. Ling, K.-S., Zhu, H.-Y., Alvizo, H., Hu, J. S., Drong, R. F., Slightom, J. L. & Gonsalves, D. (1997). The coat protein gene of grapevine leafroll associated closterovirus-3: cloning, nucleotide sequencing and expression in transgenic plants. Archives of Virology 142, 1101-1116.
33. Martelli, G. P. & Bar-Joseph, M. (1991). Closterovirus. In Classification and Nomenclature of Viruses. Fifth Report of the International Committee on Taxonomy of Viruses, pp. 345-347. Edited by R. I. B. Francki, C. M. Fauquet, D. L. Knudson & F. Brown. New York & Vienna: Springer-Verlag.
34. Mawassi, M., Karasev, A. V., Mietkiewska, E., Gafny, R., Lee, R. f., Dawson, W. O. & Bar-Joseph, M. (1995 a). Defective RNA molecules associated with citrus tristeza virus. Virology 208, 383-387.
35. Mawassi, M., Mietkiewska, E, Hilf, M. E., Ashoulin, L., Karasev, A. V., Gafny, R., Lee, R. F., Garnsey, S. M., Dawson, W. O. & Bar-Joseph, M. (1995b). Multiple species of defective RNAs in plants infected with citrus tristeza virus. Virology 214, 264-268.
36. Pappu, H. R., Karasev, A. V., Andersen, E. J., Pappu, S. S., Hilf, M. E., Febres, V. J., Eckloff, R. M. G., McCaffery, M., Boyko, V., Gowda, S., Dolja, V. V., Koonin, E. V., Gumpf, D. J., Cline, K. C., Garnsey, S. M., Dawson, W. O., Lee, R. F. & Niblett, C. L. (1994). Nucleotide sequence and organization of eight 3′ open reading frames of the citrus tristeza closterovirus genome. Virology 199, 35-46.
37. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proceedings of the National Academy of Sciences, USA 85, 2444-2448.
38. Petersen, C. L. & Charles, J. G. (1997). Transmission of grapevine leafroll-associated closteroviruses by Pseudococcus longispinus and P. calceolariae. Plant Pathology 46, 509-515.
39. Raine, J., McMullen, R. D. & Forbes, A. R. (1986). Transmission of the agent causing little cherry disease by the apple mealybug Phenacoccus aceris and the dodder Cuscuta lupulifonnis. Canadian Journal of Plant Pathology 8, 6-11.
40. Rosciglione, B. & Gugerli, P. (1989). Transmission of grapevine leafroll disease and an associated closterovirus to healthy grapevine by the mealybug Planococcus ficus. Phytoparasitica 17, 63.
41. Saitou, N. & Nei, M. (1987). The neighbor joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
42. Saldarelli, P., Minafra, A., Martelli, G. P. & Walter, B. (1994). Detector of grapevine leafroll-associated closterovirus III by molecula hybridization. Plant Pathology 43, 91-96.
43. Sneath, P. H. A. & Sokal, R. R. (1973). Numerical Taxonomy - Th Principles and Practice of Numerical Taxonomy. San Francisco: Freeman.
44. Tanne, E., Ben, D. Y. & Raccah, B. (1989). Transmission of closterolike particles by mealybugs (Pseudococcidae) in Israel. Phytoparasitica 17, 03-64.
45. Zee, F., Gonsalves, D., Goheen, A., Kim, K. S., Pool, R. & Lee, R. F. (1987). Cytopathology of leafroll-diseased grapevines and the purification and serology of associated closteroviruslike particles. Phytopathology 77, 1427-1434.
46. Zimmermann, D., Bass, P., Legin, R. & Walter, B. (1990). Characterization and serological detection of four closterovirus-like particles associated with leafroll disease on grapevine. Journal of Phytopathology 130, 205-218.