Molecular diagnosis and epidemiology of fungal infections

Medical Mycology, Supplement

Volumn 36, Issue 1, 1998, Pages 249-257

  Reiss, E ^a,h   Tanaka, K ^b   Bruker, G ^c   Chazalet, V ^c   Coleman, D ^d   Debeaupuis, J P ^c   Hanazawa, R ^e   Latge J P ^c   Lortholary, J ^c   Makimura, K ^f   Morrison, C J ^a   Murayama, S Y ^e   Naoe, S ^g   Paris, S ^c   Sarfati, J ^c   Shibuya, K ^g   Sullivan, D ^d   Uchida, K ^f   Yamaguchl, H ^e,f  

^a NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

^b NAGOYA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c INSTITUT PASTEUR   (France)

^d TRINITY COLLEGE DUBLIN   (Ireland)

^e TEIKYO UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^f TEIKYO UNIVERSITY   (Japan)

^g TOHO UNIVERSITY OHASHI MEDICAL CENTER   (Japan)

^h CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

Aspergillosis; Candidiasis; Diagnostics; Epidemiology; Molecular; PCR

Indexed keywords

FUNGAL DNA; RESTRICTION ENDONUCLEASE; RIBOSOME DNA;

ASPERGILLOSIS; ASPERGILLUS FUMIGATUS; BLOOD; CANDIDIASIS; CEREBROSPINAL FLUID; CONFERENCE PAPER; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA SEQUENCE; ENZYME IMMUNOASSAY; HOSPITAL INFECTION; IN SITU HYBRIDIZATION; LUNG ASPERGILLOSIS; MYCOSIS; NONHUMAN; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; RANDOM AMPLIFIED POLYMORPHIC DNA; SOUTHERN BLOTTING; SPUTUM;

ASPERGILLOSIS; ASPERGILLUS; CANDIDA; CANDIDIASIS; EPIDEMIOLOGY, MOLECULAR; HUMANS; MYCOLOGICAL TYPING TECHNIQUES; MYCOSES;

EID: 6544233989     PISSN: 09668454     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (46)

1. Jarvis WR. Epidemiology of nosocomial fungal infections, with emphasis on Candida species. Clin Infec Dis 1995; 20: 1526-30.
2. Wenzel RP. Nosocomial candidemia: risk factors and attributable mortality. Clin Infect Dis 1995; 20: 1531-34.
3. Wcy SB, Mori M, Pfaller MA, Woolson R, Wenzel RP. Hospital-acquired candidemia: the attributable mortality and excess length of stay. Arch Intern Med 1988; 148: 2642-5.
4. Fridkin SK, Jarvis WR. Epidemiology of nosocomial fungal infections. Clin Microbiol Rev 1996; 9: 499-511
5. Pannuti CS, Gingrich RD, Pfaller MA, Wenzel RP. Nosocomial pneumonia in adult patients undergoing bone marrow transplantation: a 9-year study. J Clin Oncol 1991; 9: 77-84.
6. Pfaller MA. Nosocomial candidiasis: emerging species, reservoirs, and modes of transmission. Clin Infect Dis 1996; 22 (Suppl. 2): S89-S94.
7. Sullivan DJ, Henman MC, Moran GP, O'Neill LC, Bennett DE, Shanley DB. Coleman DC. Molecular genetic approaches to identification, epidemiology and taxonomy of non-albicans Candida species. J Med Microbiol 1996; 44: 399-408.
8. Sullivan DJ, Westerneng TJ, Haynes KA, Bennett DE, Coleman DC. Candida dubliniensis sp. nov. phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals. Microbiology 1995; 141: 1507-21.
9. Iwen PC, Kelly DM, Reed EC, Hinricks SH. Invasive infection due to Candida krusei in immunocompromised patients not treated with fluconazole. Clin Infect Dis 1995; 20: 342-7.
10. Scherer S, Stevens DA. Application of DNA typing methods to epidemiology and taxonomy of Candida species. J Clin Microbiol 1987; 25: 675-9.
11. Coleman DC, Bennett DE, Sullivan DJ, Gallagher PJ, Henman MC, Shanley DB, Russell RJ. Oral Candida in HIV infection and AIDS. New perspectives/new approaches. Crit Rev Microbiol 1993; 19: 61-82.
12. Carlotti A, Grillot R, Couble A, Villard J. Typing of Candida krusei clinical isolates by restriction endonuclease analysis and hybridization with CkF1,2 DNA probe. J Clin Microbiol 1994; 32: 1691-9.
13. Sullivan D, Bennett D, Henman M, Harwood P, Flint S, Mulcahy F. Shanley D, Coleman D. Oligonucleotide fingerprinting of isolates of Candida species other than C. albicans and of atypical Candida species from human immunodeficiency virus-positive and AIDS patients. J Clin Microbiol 1993; 31: 2124-33.
14. Doebbeling BN, Lehmann PF, Hollis RJ, Wu LC, Widmer AF, Voss A. Pfaller MA. Comparison of pulsed-field gel electrophoresis with isoenzyme profiles as a typing system for Candida tropicalis. Clin Infect Dis 1993; 16: 377-83
15. Defontain A, Coarer M, Bouchara JP. Contribution of various techniques of molecular analysis to strain identification of Candida glabrata. Microbial Ecology in Health and Disease 1996; 9: 27-33.
16. Branchini ML, Pfaller MA, Rhine-Chalberg J, Frempong T, Isenberg HD. Genotypic variation and slime production among blood and catheter isolates of Candida parapsilosis. J Clin Microbiol 1994; 32: 452-6.
17. King D, Rhine-Chalberg J, Pfaller MA, Moser SA, Merz WG. Comparison of four DNA-based methods for strain delineation of Candida lusitaniae. J Clin Microbiol 1995; 33: 1467-70.
18. Lichewski A, Ruhnke M, Tennagen I, Schonian G, Morschhauser J, Hacker J. Molecular epidemiology of Candida isolates from AIDS patients showing different fluconazole resistance patterns. J Clin Microbiol 1995; 33: 769-71.
19. Dib JC, Dube M, Kelly C, Rinaldi MG, Patterson JE. Evaluation of pulsed-field gel electrophoresis as a typing system for Candida rugosa. comparison of karyotype and restriction fragment length polymorphisms. J Clin Microbiol 1996; 36: 1494-6.
20. Welsh J, McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucl Acids Res 1990; 18: 7213-8.
21. Zeng S, Wu LC, Lehmann PF, Random amplified polymorphic DNA analysis of culture collection strains of Candida species. J Med Vet Mycol 1996; 34: 293-7.
22. Cobb BD, Clarkson JM. A simple procedure for optimizing the polymerase chain reaction (PCR) using modified Taguchi methods. Nucl Acids Res 1994; 22: 3801-5.
23. Redkar RJ, Dube MP, Mccleskey FK, Rinaldi MG, Del Vecchio VG. DNA fingerprinting of Candida rugosa via repetitive sequence-based PCR. J Clin Microbiol 1996; 34: 1677-81.
24. Walsh TJ, Francesconi A, Kasai M, Chanock SJ. PCR and single-strand conformational polymorphism for recognition of medically important opportunistic fungi. J Clin Microbiol 1995; 33: 3216-20.
25. Soll DR, Staebell M, Langtimm C, Pfaller M, Hicks J, Rao TV. Multiple Candida strains in the course of a single systemic infection. J Clin Microbiol 1988; 26: 1448-59.
26. Lockhart SR, Fritch JJ, Meier AS, Schroppel K, Srikantha T, Galask R, Soll DR. Colonizing populations of Candida albicans are clonal in origin but undergo microevolution through Cl8 fragment reorganization as demonstrated by DNA fingerprinting and Cl sequencing. J Clin Microbiol 1995; 33: 1501-9
27. Moran GP, Sullivan DJ, Henman MC, McCreary C, Harrington BJ, Shanley DB, Coleman DC. Antifungal drug susceptibilities of oral Candida dubliniensis isolates from human immunodeficiency virus (HIV) -infected and non-HIV-infected subjects and generation of stable fluconazole-resistant derivatives in vitro. Antimicrob Agents Chemother 1997; 41: 617-23.
28. Girardin H, Latge JP, Srikantha T, Morrow B, Soll DR. Development of DNA probes for fingerprinting Aspergillus fumigatus. J Clin Microbiol 1993; 31: 1547-54.
29. Girardin H, Sarfati J, Kobayashi H, Bouchara JP, Latgé JP. Use of DNA moderately repetitive sequence to type Aspergillus fumigatus isolates from aspergilloma patients. J Infectious Dis 1994; 169: 683-5.
30. Neuveglise C, Sarfati J, Latgé JP, Paris S. Afutl, a retrotransposon-like element from Aspergillus fumigatus. Nucl Acids Res 1996; 24: 1428-34.
31. Girardin H, Sarfati J, Traore F, Dupouy-Camet J, Derouin F, Latgé JP. Molecular epidemiology of nosocomial invasive aspergillosis. J Clin Microbiol 1994; 32: 684-90.
32. Debeaupuis JP, Sarfati J, Chazalet V, Latge JP. Genetic diversity among clinical and environmental isolates of Aspergillus fumigatus Infect Immun 1997; 65: 3080-5.
33. Makimura K, Murayama SY, Yamaguchi H, Detection of a wide range of medically important fungi by the polymerase chain reaction. J Med Microbiol 1994; 40: 358-64.
34. Fischer SG, Lerman LS. DNA fragments differing by single base-pair substitutions are separated in denaturing gradient gels: correspondence with melting theory. Proc Natl Acad Sci USA 1983; 80: 1579-83.
35. Myers RM, Lumelsky N, Lerman LS, Maniatis T. Detection of single base substitutions in total genomic DNA. Nature 1985, 313: 495-8.
36. Montone KT, Litzky LA. Rapid method for detection of Aspergillus 5S ribosomal RNA using a genus-specific oligonucleotide probe. Am J Clin Pathol 1995; 103: 48-51.
37. Montone KT. In situ hybridization for ribosomal RNA sequence: A rapid, sensitive method for diagnosis of infectious pathogens in anatomic pathology substrates. Acta Histochem Cytochem 1994; 27: 601-6.
38. Nuovo GJ, MacConnell P, Forde A, Delvenne P. Detection of human papilloma virus DNA in formalin-fixed tissues by in situ hybridization after amplification by the polymerase chain reaction. Am J Pathol 1991; 139: 847-54.
39. Rand KH, Houck H, Wolff M. Detection of candidemia by polymerase chain reaction. Mol Cell Probes 1994; 8: 215-21.
40. Burgener-Kairuz P, Zuber J-P, Jaunin P, Buchman TG, Bille J, Rossier M. Rapid detection and identification of Candida albicans and Torulopsis (Candida) glabrata in clinical specimens by species-specific nested PCR amplification of a cytochrome P-450 lanosterol-α-demethylase (L1A1) gene fragment. J - Clin Microbiol 1994; 32: 1902-7.
41. Chryssanthou E, Andersson B, Petrini B, Lofdahl S, Tollemar J. Detection of Candida albicans DNA in serum by polymerase chain reaction. Scand J Infectious Dis 1994; 26: 479-85.
42. Fujita S, Lasker BA, Lott TJ, Reiss E, Morrison CJ. Microtitration plate enzyme immunoassay to detect PCR-amplified DNA from Candida species in blood. J Clin Microbiol 1995; 33: 962-7.
43. Shin J-H. Nolte FS, Morrison CJ. Rapid identification of Candida species in blood cultures by a clinically useful PCR method. J Clin Microbiol 1997; 35: 1454-9.
44. Lott TJ, Burns BM, Zancope-Oliveira R, Elie CM, Reiss E. Sequence analysis of the internal transcribed spacer 2 (ITS2) from yeast species within the genus Candida. Curr Microbiol 1998; 63-9.
45. Elie CM, Lott TJ, Burns BM, Reiss E, Morrison CJ. Rapid identification of Candida species using species-specific DNA probes. J Clin Microbiol 1998: in press.
46. Livak K, Flood S, Marmaro J, Guisti W, Deetz K. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Meth Appl 1995; 4: 357-62.