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Volumn 64, Issue 7, 1998, Pages 2463-2472

Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

EID: 0031842281     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.64.7.2463-2472.1998     Document Type: Article
Times cited : (316)

References (38)
  • 3
    • 0030617431 scopus 로고    scopus 로고
    • Increased moth herbivory associated with environmental stress of pinyon pine at local and regional levels
    • Cobb, N. S., S. Mopper, C. A. Gehring, M. Caouette, K. M. Christensen, and T. G. Whitham. 1997. Increased moth herbivory associated with environmental stress of pinyon pine at local and regional levels. Oecologia 109:389-397.
    • (1997) Oecologia , vol.109 , pp. 389-397
    • Cobb, N.S.1    Mopper, S.2    Gehring, C.A.3    Caouette, M.4    Christensen, K.M.5    Whitham, T.G.6
  • 4
    • 0027380335 scopus 로고
    • Detection of polychlorinated biphenyl degradation genes in polluted sediments by direct DNA extraction and polymerase chain reaction
    • Erb, R. W., and I. Wagner-Döbler. 1993. Detection of polychlorinated biphenyl degradation genes in polluted sediments by direct DNA extraction and polymerase chain reaction. Appl. Environ. Microbiol. 59:4065-4073.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 4065-4073
    • Erb, R.W.1    Wagner-Döbler, I.2
  • 5
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts
    • Gardes, M., and T. Bruns. 1993. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol. Ecol. 2:113.
    • (1993) Mol. Ecol. , vol.2 , pp. 113
    • Gardes, M.1    Bruns, T.2
  • 6
    • 0027502979 scopus 로고
    • Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria
    • Herrick, J. B., E. L. Madsen, C. A. Batt, and W. C. Ghiorse. 1993. Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria. Appl. Environ. Microbiol. 59:687-694.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 687-694
    • Herrick, J.B.1    Madsen, E.L.2    Batt, C.A.3    Ghiorse, W.C.4
  • 7
    • 33645581705 scopus 로고
    • Physical and chemical cell disruption for the recovery of intracellular proteins
    • R. Seetharam and S. K. Sharma (ed.), Marcel Dekker, Inc., New York, N.Y.
    • Hopkins, T. R. 1991. Physical and chemical cell disruption for the recovery of intracellular proteins. In R. Seetharam and S. K. Sharma (ed.), Purification and analysis of recombinant proteins. Marcel Dekker, Inc., New York, N.Y.
    • (1991) Purification and Analysis of Recombinant Proteins
    • Hopkins, T.R.1
  • 8
    • 0028346462 scopus 로고
    • Improved methods for the detection of Bacillus anthracis spores by the polymerase chain reaction
    • Johns, M., L. Harrington, R. W. Titball, and D. L. Leslie. 1994. Improved methods for the detection of Bacillus anthracis spores by the polymerase chain reaction. Lett. Appl. Microbiol. 18:236-238.
    • (1994) Lett. Appl. Microbiol. , vol.18 , pp. 236-238
    • Johns, M.1    Harrington, L.2    Titball, R.W.3    Leslie, D.L.4
  • 11
    • 0344332675 scopus 로고    scopus 로고
    • (New Mexico State University). Personal communication
    • Liddell, C. (New Mexico State University). Personal communication.
    • Liddell, C.1
  • 12
    • 0028269319 scopus 로고
    • Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
    • Moré, M. I., J. B. Herrick, M. C. Silva, W. C. Ghiorse, and E. L. Madsen. 1994. Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment. Appl. Environ. Microbiol. 60:1572-1580.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1572-1580
    • Moré, M.I.1    Herrick, J.B.2    Silva, M.C.3    Ghiorse, W.C.4    Madsen, E.L.5
  • 13
    • 0032011519 scopus 로고    scopus 로고
    • A miniature analytical instrument for nucleic acids based on micromachined silicon reaction chambers
    • Northrup, M. A., B. Benett, D. Hadley, P. Landre, S. Lehew, J. Richards, and P. Stratton. 1997. A miniature analytical instrument for nucleic acids based on micromachined silicon reaction chambers. Anal. Chem. 70:918-922.
    • (1997) Anal. Chem. , vol.70 , pp. 918-922
    • Northrup, M.A.1    Benett, B.2    Hadley, D.3    Landre, P.4    Lehew, S.5    Richards, J.6    Stratton, P.7
  • 14
    • 12744281935 scopus 로고
    • The extraction and purification of microbial DNA from sediments
    • Ogram, A., G. S. Sayler, and T. Barkay. 1987. The extraction and purification of microbial DNA from sediments. J. Microbiol. Methods 7:57-66.
    • (1987) J. Microbiol. Methods , vol.7 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 15
    • 0026745065 scopus 로고
    • Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction
    • Picard, C., C. Ponsonnet, E. Paget, X. Nesme, and P. Simonet. 1992. Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl. Environ. Microbiol. 58:2717-2722.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2717-2722
    • Picard, C.1    Ponsonnet, C.2    Paget, E.3    Nesme, X.4    Simonet, P.5
  • 16
    • 0027272843 scopus 로고
    • A simple mini-method to extract DNA directly from soil for use with polymerase chain reaction amplification
    • Porteus, L. R., and J. L. Armstrong. 1993. A simple mini-method to extract DNA directly from soil for use with polymerase chain reaction amplification. Curr. Microbiol. 27:115-118.
    • (1993) Curr. Microbiol. , vol.27 , pp. 115-118
    • Porteus, L.R.1    Armstrong, J.L.2
  • 17
    • 0027984683 scopus 로고
    • An effective method to extract DNA from environmental samples for polymerase chain reaction amplification and DNA fingerprint analysis
    • Porteus, L. R., J. L. Armstrong, R. J. Seider, and L. S. Watrud. 1994. An effective method to extract DNA from environmental samples for polymerase chain reaction amplification and DNA fingerprint analysis. Curr. Microbiol. 29:301-307.
    • (1994) Curr. Microbiol. , vol.29 , pp. 301-307
    • Porteus, L.R.1    Armstrong, J.L.2    Seider, R.J.3    Watrud, L.S.4
  • 18
    • 0028207257 scopus 로고
    • Identification of capsule-forming Bacillus anthracis spores with the PCR and a novel dual-probe hybridization format
    • Reif, T. C., M. Johns, S. D. Pillai, and M. Carl. 1994. Identification of capsule-forming Bacillus anthracis spores with the PCR and a novel dual-probe hybridization format. Appl. Environ. Microbiol. 60:1622-1625.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1622-1625
    • Reif, T.C.1    Johns, M.2    Pillai, S.D.3    Carl, M.4
  • 19
    • 0025781097 scopus 로고
    • DNA recovery and direct detection of Tn5 sequences in soil
    • Selenska, S., and W. Klingmuller. 1991. DNA recovery and direct detection of Tn5 sequences in soil. Lett. Appl. Microbiol. 13:24-31.
    • (1991) Lett. Appl. Microbiol. , vol.13 , pp. 24-31
    • Selenska, S.1    Klingmuller, W.2
  • 20
    • 0028868465 scopus 로고
    • Mechanisms for the prevention of damage to DNA in spores of Bacillus species
    • Setlow, P. 1995. Mechanisms for the prevention of damage to DNA in spores of Bacillus species. Annu. Rev. Microbiol. 49:29-54.
    • (1995) Annu. Rev. Microbiol. , vol.49 , pp. 29-54
    • Setlow, P.1
  • 22
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt, E., W. Liesack, and B. M. Goebel. 1993. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J. 7:232-236.
    • (1993) FASEB J. , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 25
    • 0027202733 scopus 로고
    • Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast
    • Tebbe, C. C., and W. Vahjen. 1993. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl. Environ. Microbiol. 59:2657-2665.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2657-2665
    • Tebbe, C.C.1    Vahjen, W.2
  • 26
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai, Y.-L., and B. H. Olson. 1991. Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol. 57:1070-1074.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1070-1074
    • Tsai, Y.-L.1    Olson, B.H.2
  • 27
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction
    • Tsai, Y.-L., and B. H. Olson. 1992. Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl. Environ. Microbiol. 58:2292-2295.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2292-2295
    • Tsai, Y.-L.1    Olson, B.H.2
  • 28
    • 0028842856 scopus 로고
    • Direct DNA extraction for PCR-mediated assays of soil organisms
    • Volossiouk, T., E. J. Robb, and R. N. Nazar. 1995. Direct DNA extraction for PCR-mediated assays of soil organisms. Appl. Environ. Microbiol. 61:3972-3976.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3972-3976
    • Volossiouk, T.1    Robb, E.J.2    Nazar, R.N.3
  • 29
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), Academic Press, San Diego, Calif.
    • White, T. J., T. Bruns, S. Lee, and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, p. 315-322. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), PCR protocols, a guide to methods and applications. Academic Press, San Diego, Calif.
    • (1990) PCR Protocols, a Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 30
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson, I. G. 1997. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63:3741-3751.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 31
    • 0345627220 scopus 로고    scopus 로고
    • (Duke University). Personal communication
    • Wilson, K. H. (Duke University). Personal communication.
    • Wilson, K.H.1
  • 32
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson, K. H., and R. B. Blitchington. 1996. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:2273-2278.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2
  • 33
    • 0025045135 scopus 로고
    • Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction
    • Wilson, K. H., R. B. Blitchington, and R. C. Green. 1990. Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J. Clin. Microbiol. 28:1942-1946.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 1942-1946
    • Wilson, K.H.1    Blitchington, R.B.2    Green, R.C.3
  • 34
    • 0026046523 scopus 로고
    • Streptomyces marker plasmids for monitoring survival and spread of streptomycetes in soil
    • Wipat, A., E. M. H. Wellington, and V. A. Saunders. 1991. Streptomyces marker plasmids for monitoring survival and spread of streptomycetes in soil. Appl. Environ. Microbiol. 57:3322-3330.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 3322-3330
    • Wipat, A.1    Wellington, E.M.H.2    Saunders, V.A.3
  • 35
    • 0029989857 scopus 로고    scopus 로고
    • Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device
    • Woolley, A. T., D. Hadley, P. Landre, A. J. deMello, R. A. Mathies, and M. A. Northrup. 1996. Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. Anal. Chem. 68:4081-4086.
    • (1996) Anal. Chem. , vol.68 , pp. 4081-4086
    • Woolley, A.T.1    Hadley, D.2    Landre, P.3    DeMello, A.J.4    Mathies, R.A.5    Northrup, M.A.6
  • 36
    • 0016593935 scopus 로고
    • Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: Evidence for a new function of the TOL plasmid
    • Worsey, M. J., and P. A. Williams. 1975. Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid. J. Bacteriol. 124:7-13.
    • (1975) J. Bacteriol. , vol.124 , pp. 7-13
    • Worsey, M.J.1    Williams, P.A.2
  • 37
    • 0027288036 scopus 로고
    • Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils
    • Young, C. C., R. L. Burghoff, L. G. Keim, B. Minak-Bernero, J. R. Lute, and S. M. Hinton. 1993. Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils. Appl. Environ. Microbiol. 59:1972-1974.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1972-1974
    • Young, C.C.1    Burghoff, R.L.2    Keim, L.G.3    Minak-Bernero, B.4    Lute, J.R.5    Hinton, S.M.6


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