The nucleotide sequence and genomic organization of grapevine virus B

Journal of General Virology

Volumn 77, Issue 10, 1996, Pages 2645-2652

  Saldarelli, P ^a   Minafra, A ^a   Martelli, G P ^a  

^a CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

GLUTATHIONE TRANSFERASE; HELICASE; HYBRID PROTEIN; METHYLTRANSFERASE; RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DATA BASE; ESCHERICHIA COLI; GENETIC ORGANIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PLANT VIRUS; PRIORITY JOURNAL; RNA CAPPING; SEQUENCE HOMOLOGY; TAXONOMY; VIRUS GENOME; VIRUS REPLICATION;

APPLE CHLOROTIC LEAF SPOT VIRUS; ESCHERICHIA COLI; GRAPEVINE VIRUS B; MALUS X DOMESTICA; RNA VIRUSES; TRICHOVIRUS; VITIS;

EID: 0029860518     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-77-10-2645     Document Type: Article

References (38)

1. Ahlquist, P. & Janda, M. (1984). cDNA cloning and in vitro transcription of the complete brome mosaic virus genome. Molecular and Cellular Biology 4, 2876-2882.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215, 403-410.
3. Bonavia, M., Digiaro, M., Boscia, D., Boari, A., Bottalico, G., Savino, V. & Martelli, G. P. (1996). Studies on 'corky rugose wood' of grapevine and on the diagnosis of grapevine virus B. Vitis 35 (in press).
4. Boscia, D., Savino, V., Minafra, A., Namba, S., Elicio, V., Castellano, M. A., Gonsalves, D. & Martelli, G. P. (1993). Properties of a filamentous virus isolated from grapevines affected by corky bark. Archives of Virology 130, 109-120.
5. DeBorde, D. C., Naeve, C. W., Herlocher, M. L. & Maassab, H. F. (1986). Resolution of a common RNA sequence ambiguity by terminal deoxynucleotidyl transferase. Analytical Biochemistry 157, 275-282.
6. Deom, C. M., Schubert, K. R., Wolf, S., Holt, C. A., Lucas, W. J. & Beachy, R. N. (1990). Molecular characterization and biological function of the movement protein of tobacco mosaic virus in transgenic plants. Proceedings of the National Academy of Sciences, USA 87, 3284-3288.
7. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12, 387-395.
8. Diener, T. O. & Schneider, I. R. (1968). Virus degradation and nucleic acid release in single phase phenol system. Archives of Biochemistry and Biophysics 124, 401-412.
9. Dolja, V. V., Boyko, V. P., Agranovsky, A. A. & Koonin, E. V. (1991). Phytogeny of capsid proteins of rod shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184, 79-86.
10. Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.5). Cladistics 5, 164-166.
11. Garau, R., Prota, V. A., Boscia, D., Piredda, R. & Prota, U. (1993). Studies on grapevine virus B isolates from corky bark-affected vines in Sardinia. Rivista di Patologia Vegetale 3, 83-89.
12. Garau, R., Prota, V. A., Boscia, D., Fiori, M. & Prota, U. (1995). Pseudococcus affinis Mask., a new vector of trichoviruses A and B. Vitis 34, 67-68.
13. German, S., Candresse, T., Lanneau, M., Huet, J. C., Pernollet, J. C. & Dunez, J. (1990). Nucleotide sequence and genomic organization of apple chlorotic leaf spot closterovirus. Virology 179, 104-112.
14. Gorbalenya, A. E. & Koonin, E. V. (1989). Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Research 17, 8413-8440.
15. Gorbalenya, A. E., Koonin, E. V. & Lai, M. M. C. (1991). Putative papain-related thiol proteases of positive-strand RNA viruses. FEBS Letters 288, 201-205.
16. Greif, C., Garau, R., Boscia, D., Prota, V. A., Fiori, M., Bass, P., Walter, B. & Prota, U. (1995). The relationship of grapevine leafroll-associated closterovirus 2 with a graft incompatibility condition of grapevines. Phytopathologia Mediterranea 34, 167-173.
17. Hager, D. A. & Burgess, R. R. (1980). Elution of proteins from sodium dodecyl sulfate polyacrylamide gels, removal of sodium dodecyl sulfate, and renaturation of enzymatic activity. Results with sigma subunit of E. coli RNA polymerase, wheat germ DNA topoisomerase, and other enzymes. Analytical Biochemistry 109, 76-86.
18. Higgins, D. G. & Sharp, P. M. (1988). CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73, 237-244.
19. Koonin, E. V. (1991). The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. Journal of General Virology 72, 2197-2206.
20. Kozak, M. (1987). At least six nucleotides preceding the AUG initiation codon enhance translation in mammalian cells. Journal of Molecular Biology 196, 947-950.
21. Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
22. Lutcke, H. A., Chow, K. C., Nickel, F. S., Moss, K. A., Kern, H. F. & Scheele, G. A. (1987). Selection of AUG initiation codons differs in plants and animals. EMBO Journal 6, 43-48.
23. Marck, C. (1988). DNA Strider: a "C" program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Research 16, 1829-1836.
24. Martelli, G. P., Candresse, T. & Namba, S. (1994). Trichovirus, a new genus of plant viruses. Archives of Virology 134, 451-455.
25. Meshi, T., Ishikawa, M., Takamatsu, N., Ohno, T. & Okada, Y. (1983). The 5′ terminal sequence of TMV RNA, question on the polymorphism found in vulgare strain. FEBS Letters 162, 282-285.
26. Minafra, A., Saldarelli, P., Grieco, F. & Martelli, G. P. (1994). Nucleotide sequence of the 3′ terminal region of the RNA of two filamentous grapevine viruses. Archives of Virology 137, 249-261.
27. Niesbach-Klosgen, U., Guilley, G., Jonard, G. & Richards, K. (1990). Immunodetection in vivo of beet necrotic yellow vein virus-encoded proteins. Virology 178, 52-61.
28. Ochi, M., Kashiwazaki, S., Hiratsuka, K., Namba, S. & Tsuchizaki, T. (1992). Nucleotide sequence of the 3′-terminal region of potato virus T RNA. Annals of the Phytopathological Society of Japan 58, 416-425.
29. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proceedings of the National Academy of Sciences, USA 85, 2444-2448.
30. Rozanov, M. N., Koonin, E. V. & Gorbalenya, A. E. (1992). Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. Journal of General Virology 73, 2129-2134.
31. Rozanov, M. N., Drugeon, G. & Haenni, A. L. (1995). Papain-like proteinase of turnip yellow mosaic virus: a prototype of a new viral proteinase group. Archives of Virology 140, 273-288.
32. Saldarelli, P., Minafra, A., Garau, R. & Martelli, G. P. (1993). A cloned probe to grapevine virus B. Rivista di Patologia Vegetale 3, 15-22.
33. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning : A Laboratory Manual, 2nd edn. New York: Cold Spring Harbor Laboratory.
34. Sato, K., Yoshikawa, N. & Takahashi, T. (1993). Complete nucleotide sequence of the genome of an apple isolate of apple chlorotic leaf spot virus. Journal of General Virology 74, 1927-1931.
35. Smith, D. B. & Johnson, K. S. (1988). Single step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase. Gene 67, 31-40.
36. Smith, T. F. & Waterman, M. S. (1981). Identification of common molecular subsequences. Journal of Molecular Biology 147, 195-197.
37. Studier, F. W., Rosemberg, A. H., Dunn, J. J. & Dubendorf, F. (1990). Use of T7 polymerase to direct expression of cloned genes. Methods in Enzymology 185, 60-89.
38. White, J. L. & Kaper, J. M. (1989). A simple method for detection of viral satellite RNAs in small plant tissues samples. Journal of Virological Methods 23, 83-94.