Antibacterial proline-rich oligopeptides and their target proteins

Biochemistry (Moscow)

Volumn 69, Issue 10, 2004, Pages 1082-1091

  Markossian, K A ^a   Zamyatnin, A A ^a   Kurganov, B I ^a  

^a BACH INSTITUTE OF BIOCHEMISTRY   (Russian Federation)

Author keywords

Antibacterial activity; EROP Moscow database; Folding; Heat shock proteins; Proline rich oligopeptides

Indexed keywords

ANTIBIOTICS; BACTERIA; CELLS; METABOLISM; OLIGOMERS; PROTEINS;

ANTIBACTERIAL ACTIVITY; FOLDING; HEAT SHOCK PROTEINS; OLIGOPEPTIDES;

POLYPEPTIDES;

ANIMALIA; ARA; BACTERIA (MICROORGANISMS); HEXAPODA; INSECTA;

ADENOSINE TRIPHOSPHATASE; AMINO ACID; ANTIINFECTIVE AGENT; CHAPERONE; DNAK PROTEIN, E COLI; ESCHERICHIA COLI PROTEIN; HEAT SHOCK PROTEIN 70; OLIGOPEPTIDE; PROTEIN;

AMINO ACID SEQUENCE; DRUG ANTAGONISM; DRUG EFFECT; ESCHERICHIA COLI; GENETICS; METABOLISM; PHYSIOLOGY; PROTEIN FOLDING; REVIEW;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; AMINO ACIDS; ANTI-BACTERIAL AGENTS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HSP70 HEAT-SHOCK PROTEINS; MOLECULAR CHAPERONES; OLIGOPEPTIDES; PROTEIN FOLDING; PROTEINS;

EID: 9144258550     PISSN: 00062979     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:BIRY.0000046881.29486.51     Document Type: Article

References (124)

1. Woo, P. C., To, A. P., Lau, S. K., and Yuen, K. Y. (2003) Med. Hypoth., 61, 503-508.
2. Yeaman, M. R., and Yount, N. Y. (2003) Pharm. Rev., 55, 27-55.
3. Hancock, R. E. W., and Scott, M. G. (2000) Proc. Natl. Acad. Sci. USA, 97, 8856-8861.
4. Brahmachary, M., Krishnan, S. P., Koh, J. L., Khan, A. M., Seah, S. H., Tan, T. W., Brusic, V., and Bajic, V. B. (2004) Nucleic Acids Res., 32, D586-D589.
5. Zamyatnin, A. A. (2004) http://erop.inbi.ras.ru.
6. Zamyatnin, A. A. (1984) Ann. Rev. Biophys. Bioeng., 13. 145-165.
7. Zamyatnin, A. A. (1990) Neurochemistry (Moscow), 9, 71-82.
8. Zamyatnin, A. A. (1991) Prot. Seq. Data Anal., 4, 49-52.
9. Selsted, M. E., Novotny, M. J., Morris, W. L., Tang, Y.-Q., Smith, W., and Cullor, J. S. (1992) J. Biol. Chem., 267. 4292-4295.
10. Casteels, P., Ampe, C., Jacobs, F., Vaeck, M., and Tempst, P. (1989) EMBO J., 8, 2387-2391.
11. Casteels, P., Ampe, C., Riviere, L., van Damme, J., Elicone, C., Fleming. M., Jacobs, F., and Tempst, P. (1990) Eur. J. Biochem., 187, 381-386.
12. Bulet, P., Dimarcq, J. L., Hetru, C., Lagueux, M., Charlet, M., Hegy, G., van Dorsselaer, A., and Hoffmann, J. A. (1993) J. Biol. Chem., 268. 14893-14897.
13. Cociancich, S., Dupont, A., Hegy, G., Lanot, G., Holder, F., Hetru C., Hoffmann, J. A., and Bulet, P. (1994) Biochem. J., 300. 567-575
14. Hara, S., and Yamakawa, M. (1995) Biochem. J., 310. 651-656.
15. Levashina, E. A., Ohresser, S., Bulet, P., Reichart, J.-M., Hetru, C., and Hoffmann, J. A. (1995) Eur. J. Biochem., 233. 694-700.
16. Rees, J. A., Moniatte, M., and Bulet, P. (1997) Insect Biochem. Mol. Biol., 27, 413-422.
17. Mackintosh, J. A., Veal, D. A., Beattie, A. J., and Gooley, A. A. (1998) J. Biol. Chem., 273, 6139-6143.
18. Bulet, P., Lamberty, M., Charlet, M., Sabatier, L., and Rabel, D. (2002) Submitted to the SwissProt Database, P83427.
19. Lai, R., Liu, H., Lee, W. H., and Zhang, Y. (2002) Peptides, 23, 437-442.
20. Frank, R. W., Gennaro, R., Schneider, K., Przybylski, M., and Romeo, D. (1990) J. Biol. Chem., 265, 18871-18874.
21. Agerberth, B., Lee, J.-Y., Bergman, T., Carlquist, M., Boman, H. G., Mutt, V., and Jornvall, H. (1991) Eur. J. Biochem., 202, 849-854.
22. Zanetti, M., delSal, G., Storici, P., Schneider, C., and Romeo, D. (1993) J. Biol. Chem., 268. 522-526.
23. Chernysh, S., Cocianchich, Briand, J.-P., Hetru, C., and Bulet, P. (1996) J. Insect Physiol., 42, 91-99.
24. Huttner, K. M., Lambeth, M. R., Burkin, H. R., Burkin, D. J., and Broad, T. E. (1998) Gene, 206, 85-91.
25. Shamova, O., Brogden, K. A., Zhao, C., Nguyen, T., Kokryakov, V. N., and Lehrer, R. I. (1999) Infection Immunity, 67, 4106-4111.
26. Wang, Y., Griffiths, W. J., Curstedt. T., and Johansson, J. (1999) FEBS Lett., 460, 257-262.
27. Gennaro, R., Zanetti, M., Benincasa, M., Podda, E., and Miani, M. (2002) Curr. Pharm. Des., 8, 763-778.
28. Papagianni, M. (2003) Biotechnol. Adv., 21, 465-499.
29. Shinnar, A. E., Kathryn, L., Butler, K. L., and Park, H. J. (2003) Bioorg. Chem., 31, 425-436.
30. Lee, J. Y., Boman, A., Sun, C., Andersson, M., Jornvall, H., Mutt, V. and Boman, H. G. (1989) Proc. Natl. Acad. Sci. USA, 86. 9159-9162.
31. Agerberth, B., Lee, J. Y., Bergman, T., Carlquist, M., Boman, H. G., Mutt, V., and Jornvall, H. (1991) Eur. J. Biochem., 202, 849-854.
32. Boman, H. G., Agerberth, B., and Boman, A. (1993) Infect. Immun., 61. 2978-2984.
33. Li, J., Post, M., Volk, R., Gao. Y., Li, M., Metais, C., Sato, K., Tsai, J., Aird, W., Rosenberg, R. D., Hampton, T. G., Sellke, F., Carmeliet, P., and Simons, M. (2000) Nat. Med., 6. 49-55
34. Gao, Y. H., Lecker, S., Post, M. J., Hietaranta, A. J., Li, J., Volk, R., Li, M., Sato, K., Saluja, A. K., Steer, M. L., Goldberg, A. L., and Simons, M. (2000) J. Clin. Invest., 106, 439-448.
35. Gaczynska, M., Osmulski, P. A., Gao, Y., Post, M. J., and Simons, M. (2003) Biochemistry, 42. 8663-8670.
36. Subbalakshmi, C., and Sitaram, N. (1998) FEMS Microbiol. lett., 160. 91-96.
37. Galoyan, A. A. (1997) Biochemistry of Novel Cardioactive Hormones and Immunomodulators of Neurosecretory Hypothalamus-Endocrine Heart Functional System [in Russian], Nauka, Moscow.
38. Markossian, K. A., Gurvits, B. Ya., and Galoyan, A. A. (1999) Neurochemistry (Moscow). 16, 22-25.
39. Galoyan, A. A., Sarkissian, J. S., Kipriyan, T. K., Sarkissian, E. J., Grigorian, Y. K., Sulkhanyan, R. M., and Khachatrian, T. S. (2000) Neurochem. Res., 25, 1567-1578.
40. Kevorkian, G. A., Marukhyan, G. L., Arakelyan, L. N., Guevorkian, A. G., and Galoyan, A. A. (2001) Neurochem. Res., 26, 829-832.
41. Galoyan, A. A., Sarkissian, J. S., Kipriyan, T. K., Sarkissian, E. J., Chavushyan, E. A., Sulkhanyan, R. M., Meliksetyan, I. B., Abrahamyan, S. S., Grigorian, Y. Kh., Avetisyan, Z. A., and Otieva, N. A. (2001) Neurochem. Res., 26, 1023-1038.
42. Hambardszumyan, D. Kh., Vardanyan, K. A., Gevondyan, K. A., Kamalyan, R. G., and Galoyan, A. A. (2003) Neurochemistry (Moscow), 20, 143-145.
43. Davtyan, T. K., Muradyan, E. B., Avanesyan, L. A., Aleksanyan, Yu. T., Petrosyan, G. G., and Galoyan, A. A. (1998) Neurochemistry (Moscow), 15, 45-50.
44. Galoyan, A. A., Schakhlamov, V. A., Bogdanova, I. M., Malaitzev, V. V., and Michalyova, L. M. (2002) Neurochemistry (Moscow), 19, 41-45.
45. Galoyan, A. A., and Aprikyan, V. S. (2002) Neurochem. Res., 27, 305-312.
46. Markossian, K. A., Mineeva, M. F., and Galoyan, A. A. (1999) J. Neurochem., 73, 154.
47. Dimarcq, J.-L., Keppi, E., Dunbar, B., Lambert, J., Reichhart, J.-M., Hoffmann, D., Rankine, S. M., Fothergill, J. E., and Hoffmann, J. A. (1988) Eur. J. Biochem., 171, 17-22.
48. Otvos, L., Jr. (2000) J. Pept. Sci., 6, 497-511.
49. Liu, G., Kang, D., and Steiner, H. (1995) Biochem. Biophys. Res. Commun., 269, 803-807.
50. Lemaitre, B., Nicolas, E., Michaut, L., Reichhart, J. M., and Hoffmann, J. A. (1996) Cell, 86, 973-983.
51. Lemaitre, B., Reichhart, J.-M., and Hoffmann, J. A. (1997) Proc. Natl. Acad. Sci. USA, 94, 14614-14619.
52. Tauszig, S., Jouanguy, E., Hoffmann, J. A., and Imler, J.-L. (2000) Proc. Natl. Acad. Sci. USA, 97, 10520-10525.
53. Bulet, P., Urge, L., Ohresser, S., Hetru, C., and Otvos, L., Jr. (1996) Eur. J. Biochem., 238, 64-69.
54. Hoffmann, R., Bulet, P., Urge, L., and Otvos, L., Jr. (1999) Biochim. Biophys. Acta, 1426, 459-467.
55. Vaeck, M., and Tempst, P. (1989) EMBO J., 8, 2387-2391.
56. Cociancich, S., Dupont, A., Hegyi, G., Lanot, R., Holder, F., Hetru, C., Hoffmann, J. A., and Bulet, P. (1994) Biochem. J., 300, 567-575.
57. Ludtke, S., He, K., and Huang, H. (1995) Biochemistry, 34. 16764-16769.
58. Steiner, H., Andreu, D., and Merrifield, R. B. (1988) Biochim. Biophys. Acta, 939, 260-266.
59. Wimley, W. C., Selsted, M. E., and White, S. H. (1994) Protein Sci., 3, 1362-1373.
60. Cociancich, S., Ghazi, A., Hetru, C., Hoffmann, J. A., and Letellier, L. (1993) J. Biol. Chem., 268, 19239-19245.
61. Park, C. B., Kim, H. S., and Kim, S. C. (1998) Biochem. Biophys. Res. Commun., 244, 253-257.
62. Andreu, D., and Rivas, L. (1998) Biopolymers. 47. 415-433
63. Otvos, L., Jr., Bokonyi, K., Varga, I., Otvos, B, I., Hoffmann, R., Ertl, H. C., Wade, J. D., McManus, A. M., Craik, D. J., and Bulet, P. (2000) Protein Sci., 9. 742-749.
64. Otvos, L., Jr. (2002) Cell. Mol. Life Sci., 59. 1138-1150.
65. (1988) Chemical Encyclopedia [in Russian]. Vol. 1, Izd-vo Sovetskaya Entsiklopediya. Moscow, p. 137.
66. Reiersen, H., and Rees, A. R. (2001 ) Trends Biochem. Sci., 26, 679-684.
67. Schweitzer-Stenner, R., Eker, F. Perez, A., Griebenow, K., Cao, X., and Nafie, L. A. (2003) Biopolymers, 71, 558-568.
68. Zamyatnin, A. A., and Voronina, O. L. (1998) Uspekhi Biol. Khim., 38, 165-197.
69. Gaggelli, E., D'Amelio, N., Gaggelli, N., and Valensin, G. (2001) Chembiochem., 2, 524-529.
70. Zamyatnin, A. A. (1996) Neurochemistry (Moscow). 243, 243-259.
71. Cantor, C. R., and Schimmel, P. R. (1980) Biophysical Chemistry, Pt. 1, The Conformation of Biological Macromolecules, W. H. Freeman and Co., San Francisco.
72. Spencer, D. I., Missailidis, S., Denton, G., Murray, A., Brady, K., and Matteis, C. I. (1999) Biospectroscopy, 5, 79-91.
73. Schweitzer-Stenner, R., Eker, F., Perez, A., Griebenow, K., Cao, X., and Nafie, L. A. (2003) Biopolymers, 71, 558-568.
74. Ladokhin, A. S., Selsted, M. E., and White, S. H. (1999) Biochemistry, 38, 12313-12319.
75. Otvos, L., Jr., and Cudic, M. (2003) Mini Rev. Med. Chem., 3, 708-717.
76. Imperiali, B., and O'Connor, S. E. (1999) Curr. Opin. Chem. Biol., 3, 643-649.
77. Park, C. B., Yi, K., Matsuzaki, K., Kim, M. S., and Kim, S. C. (2000) Proc. Natl. Acad. Sci. USA, 97, 8245-8250.
78. Park, C. B., Kim, M. S., and Kim, S. C. (1996) Biochem. Biophys. Res. Commun., 218, 408-413.
79. Matsuzaki, K. (1998) Biochim. Biophys. Acta, 1376, 391 -400.
80. Zhang, L., Benz, R., and Hancock, R. E. W. (1999) Biochemistry, 38, 8102-8111.
81. Oren, Z., Hong, J., and Shai, Y. (1997) J. Biol. Chem., 272, 14643-14649.
82. Bencivengo, A.-M., Cudic, M., Hofmann, R., and Otvos, L., Jr. (2001) Lett. Pept. Sci., 8, 201-209.
83. Kragol, G., Hoffmann, R., Chattergoon, M. A., Lovas, S., Cudic, M., Bulet, P., Condie, B. A., Rosengren, K. J., Montaner, L. J., and Otvos, L., Jr. (2002) Eur. J. Biochem., 269, 4226-4237.
84. Wu, M., Maier, E., Benz, R., and Hancock. R. E. W. (1999) Biochemistry, 38, 7235-7242.
85. Futaki, S., Suzuki, T., Ohashi. W. Yagami, T., Tanaka, S., Ueda, K., and Sugiura, Y. (2001) J. Biol. Chem., 276, 5836-5840.
86. Christensen, B., Fink, J., Merrifield, R. B., and Mauzerall, D. (1988) Proc. Natl. Acad. Sci. USA, 85, 5072-5076.
87. Lehrer, R. I., Barton, A., Daher, K. A., Harwig, S. S., Ganz, T., and Selsted, M. E. (1989) J. Clin. Invest., 84, 553-561.
88. Kragol, G., Lovas, S., Varadi, G., Condie, B. A., Hoffmann, R., and Otvos, L., Jr. (2001) Biochemistry, 40, 3016-3026.
89. Castle, M., Nazarian, A., Yi, S.-S., and Tempst, P. (1999) J. Biol. Chem., 274, 32555-32564.
90. Otvos, L., Jr., O. I., Rogers, M. E., Consolvo, P. J., Condie, B. A., Lovas, S., Bulet, P., and Blaszczyk-Thurin, M. (2000) Biochemistry, 39. 14150-14159.
91. Hartl, F. U. (1996) Nature, 381, 571-579.
92. Agashe, V. R., and Hartl, F. U. (2000) Semin. Cell Dev. Biol., 11. 15-25.
93. Frydman, J. (2001) Annu. Rev. Biochem., 70, 603-647.
94. Teter, S. A., Houry, W. A., Ang, D., Tradler, T., Rockabrand, D., Fischer. G., Blum, P., Georgopoulos, C., and Hartl, F. U. (1999) Cell, 97, 755-765.
95. Thulasiraman, V., Yang, C. F., and Frydman, J. (1999) EMBO J., 18, 85-95.
96. Sigler, P. B., Xu. Z., Rye, H., Burston, S. G., Fenton, W. A., and Horwich, A. L. (1998) Ann. Rev. Biochem., 67, 581-608.
97. Houry, W. A., Frishman, D., Eckerskorn, C., Lottspeich, F., and Hartl, F. U. (1999) Nature, 402, 147-154.
98. Fenton, W. A., and Horwich, A. L. (2003) Q. Rev. Biophys., 36, 229-256.
99. Zhu, X., Zhao, X., Burkholder, W. F., Gragerov, A., Ogata, C. M., Gottesman, M. E., and Hendrickson, W. A. (1996) Science, 272, 1606-1614.
100. Gottesman, M. E., and Hendrickson, W. A. (2000) Curr. Opin. Microbiol., 3, 197-202.
101. Slepenkov, S. V., Patchen, B., Peterson, K. M., and Witt, S. N. (2003) Biochemistry, 42, 5867-5876.
102. Flaherty, K. M., DeLuca-Flaherty, C., and McKay, D. B. (1990) Nature, 346, 623-628.
103. Davis, J. E., Voisine, C., and Craig, E. A. (1999) Proc. Natl. Acad. Sci. USA, 96, 9269-9276.
104. Harrison, C. J., Hayer-Hartl, M., Di Liberto, M., Hartl, F.-U., and Kuriyan, J. (1997) Science, 276, 431-435.
105. Morshauser, R. C., Wang, H., Glynn, G. C., and Zuiderweg, R. P. (1995) Biochemistry, 34, 6261-6266.
106. Bukau, B., and Horwich, A. L. (1998) Cell, 92, 351-366.
107. De Crouy-Chanel, A., Kohiyama, M., and Richarme, G. (1999) Gene, 30. 163-170.
108. Gaitanaris, G. A., Vysokanov, A., Gottesman, M. E., and Gragerov, A. (1994) Mol. Microbiol., 14, 861-870.
109. Hartl, F. U., and Hayer-Hartl, M. (2002) Science, 295, 1852-1858.
110. Rudiger, S., Germeroth, L., Schneider-Mergener, J., and Bukau, B. (1997) EMBO J., 16, 1501-1507.
111. Mayer, M. P., Rudiger, S., and Bukau, B. (2000) J. Biol. Chem., 381, 877-885.
112. Liu, W. Bratko. D., Prausnitz, J. M., and Blanch, H. W. (2003) J. Phys. Chem. B, 107, 11563-11569.
113. Schiene-Fischer, C., Habazettl, J., Schmid, F. X., and Fischer, G. (2002) Nat. Struct. Biol., 9, 419-424.
114. Slepenkov, S. V., and Witt, S. N. (1998) Biochemistry, 37. 10115-10124.
115. Slepenkov, S. V. and Witt, S. N. (1998) Biochemistry, 37, 16749-16756.
116. Freeman, B. C., Myers, M. P., Schumacher, R., and Morimoto. R. I. (1995) EMBO J., 14, 2281-2292.
117. Tsai, M.-Y. and Wang, C. (1994) J. Biol. Chem., 269, 5958-5962.
118. Mayer, M. P., Schroder, H., Rudiger, S., Paal, K., Laufen. T., and Bukau, B. (2000) Nature Struct. Biol., 7, 586-593
119. Langer, T., Lu, C., Echols, H., Flanagan, J., Hayer, M. K., and Hartl, F. U. (1992) Nature, 356, 683-689.
120. Rudiger, S., Schneider-Mergener, J., and Bukau. B. (2001) EMBO J., 20, 1042-1051.
121. Suh, W. C., Burkholder, W. F., Lu, C. Z., Zhao, X., Goltesman, M. E., and Gross, C. A. (1998) Proc. Nutl. Acad. Sci. USA. 95. 15223-15228.
122. Sigler, P. B. (1994) Nature, 371, 578-586.
123. Xu, Z., Horawich, A. L., and Sigler, P. B. (1997) Nature, 388, 741-750.
124. Chen, I., and Sigler, P. B. (1999) Cell, 99. 757-776.