-
1
-
-
85030753627
-
Cryo-electron microscopy snapshots of the spliceosome: Structural insights into a dynamic ribonucleoprotein machine
-
Fica,S.M. and Nagai,K. (2017) Cryo-electron microscopy snapshots of the spliceosome: structural insights into a dynamic ribonucleoprotein machine. Nat. Struct. Mol. Biol., 24, 791–799.
-
(2017)
Nat. Struct. Mol. Biol.
, vol.24
, pp. 791-799
-
-
Fica, S.M.1
Nagai, K.2
-
2
-
-
85039434781
-
Minor spliceosome and disease
-
Verma,B., Akinyi,M.V., Norppa,A.J. and Frilander,M.J. (2018) Minor spliceosome and disease. Semin. Cell Dev. Biol., 79, 103–112.
-
(2018)
Semin. Cell Dev. Biol.
, vol.79
, pp. 103-112
-
-
Verma, B.1
Akinyi, M.V.2
Norppa, A.J.3
Frilander, M.J.4
-
3
-
-
0022969957
-
U6 small nuclear RNA is transcribed by RNA polymerase III
-
Kunkel,G.R., Maser,R.L., Calvet,J.P. and Pederson,T. (1986) U6 small nuclear RNA is transcribed by RNA polymerase III. Proc. Natl. Acad. Sci. U.S.A., 83, 8575–8579.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 8575-8579
-
-
Kunkel, G.R.1
Maser, R.L.2
Calvet, J.P.3
Pederson, T.4
-
4
-
-
33746489955
-
Identification, cloning, and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase
-
Trippe,R., Guschina,E., Hossbach,M., Urlaub,H., Luhrmann,R. and Benecke,B.J. (2006) Identification, cloning, and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase. RNA, 12, 1494–1504.
-
(2006)
RNA
, vol.12
, pp. 1494-1504
-
-
Trippe, R.1
Guschina, E.2
Hossbach, M.3
Urlaub, H.4
Luhrmann, R.5
Benecke, B.J.6
-
5
-
-
33847360037
-
The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA
-
Spiller,M.P., Boon,K.L., Reijns,M.A. and Beggs,J.D. (2007) The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA. Nucleic Acids Res., 35, 923–929.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 923-929
-
-
Spiller, M.P.1
Boon, K.L.2
Reijns, M.A.3
Beggs, J.D.4
-
6
-
-
84865855022
-
C16orf57, a gene mutated in poikiloderma with neutropenia, encodes a putative phosphodiesterase responsible for the U6 snRNA 3 end modification
-
Mroczek,S., Krwawicz,J., Kutner,J., Lazniewski,M., Kucinski,I., Ginalski,K. and Dziembowski,A. (2012) C16orf57, a gene mutated in poikiloderma with neutropenia, encodes a putative phosphodiesterase responsible for the U6 snRNA 3 end modification. Genes Dev., 26, 1911–1925.
-
(2012)
Genes Dev
, vol.26
, pp. 1911-1925
-
-
Mroczek, S.1
Krwawicz, J.2
Kutner, J.3
Lazniewski, M.4
Kucinski, I.5
Ginalski, K.6
Dziembowski, A.7
-
7
-
-
84868141731
-
Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3-to-5 RNA exonuclease processing U6 small nuclear RNA
-
Shchepachev,V., Wischnewski,H., Missiaglia,E., Soneson,C. and Azzalin,C.M. (2012) Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3-to-5 RNA exonuclease processing U6 small nuclear RNA. Cell Rep., 2, 855–865.
-
(2012)
Cell Rep
, vol.2
, pp. 855-865
-
-
Shchepachev, V.1
Wischnewski, H.2
Missiaglia, E.3
Soneson, C.4
Azzalin, C.M.5
-
8
-
-
84894582458
-
A day in the life of the spliceosome
-
Matera,A.G. and Wang,Z. (2014) A day in the life of the spliceosome. Nat. Rev. Mol. Cell Biol., 15, 108–121.
-
(2014)
Nat. Rev. Mol. Cell Biol.
, vol.15
, pp. 108-121
-
-
Matera, A.G.1
Wang, Z.2
-
9
-
-
84875249090
-
Transcription termination by the eukaryotic RNA polymerase III
-
Arimbasseri,A.G., Rijal,K. and Maraia,R.J. (2013) Transcription termination by the eukaryotic RNA polymerase III. Biochim. Biophys. Acta, 1829, 318–330.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 318-330
-
-
Arimbasseri, A.G.1
Rijal, K.2
Maraia, R.J.3
-
10
-
-
0026565203
-
Cyclic 2,3-phosphates and nontemplated nucleotides at the 3 end of spliceosomal U6 small nuclear RNA’s
-
Lund,E. and Dahlberg,J.E. (1992) Cyclic 2,3-phosphates and nontemplated nucleotides at the 3 end of spliceosomal U6 small nuclear RNA’s. Science, 255, 327–330.
-
(1992)
Science
, vol.255
, pp. 327-330
-
-
Lund, E.1
Dahlberg, J.E.2
-
11
-
-
0021305722
-
Purified lupus antigen La recognizes an oligouridylate stretch common to the 3 termini of RNA polymerase III transcripts
-
Stefano,J.E. (1984) Purified lupus antigen La recognizes an oligouridylate stretch common to the 3 termini of RNA polymerase III transcripts. Cell, 36, 145–154.
-
(1984)
Cell
, vol.36
, pp. 145-154
-
-
Stefano, J.E.1
-
12
-
-
0022423257
-
Association of the lupus antigen La with a subset of U6 snRNA molecules
-
Rinke,J. and Steitz,J.A. (1985) Association of the lupus antigen La with a subset of U6 snRNA molecules. Nucleic Acids Res., 13, 2617–2629.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 2617-2629
-
-
Rinke, J.1
Steitz, J.A.2
-
13
-
-
84873603856
-
Aberrant 3 oligoadenylation of spliceosomal U6 small nuclear RNA in poikiloderma with neutropenia
-
Hilcenko,C., Simpson,P.J., Finch,A.J., Bowler,F.R., Churcher,M.J., Jin,L., Packman,L.C., Shlien,A., Campbell,P., Kirwan,M. et al. (2013) Aberrant 3 oligoadenylation of spliceosomal U6 small nuclear RNA in poikiloderma with neutropenia. Blood, 121, 1028–1038.
-
(2013)
Blood
, vol.121
, pp. 1028-1038
-
-
Hilcenko, C.1
Simpson, P.J.2
Finch, A.J.3
Bowler, F.R.4
Churcher, M.J.5
Jin, L.6
Packman, L.C.7
Shlien, A.8
Campbell, P.9
Kirwan, M.10
-
14
-
-
47949110828
-
3-cyclic phosphorylation of U6 snRNA leads to recruitment of recycling factor p110 through LSm proteins
-
Licht,K., Medenbach,J., Luhrmann,R., Kambach,C. and Bindereif,A. (2008) 3-cyclic phosphorylation of U6 snRNA leads to recruitment of recycling factor p110 through LSm proteins. RNA, 14, 1532–1538.
-
(2008)
RNA
, vol.14
, pp. 1532-1538
-
-
Licht, K.1
Medenbach, J.2
Luhrmann, R.3
Kambach, C.4
Bindereif, A.5
-
15
-
-
85028986269
-
Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities
-
Didychuk,A.L., Montemayor,E.J., Carrocci,T.J., DeLaitsch,A.T., Lucarelli,S.E., Westler,W.M., Brow,D.A., Hoskins,A.A. and Butcher,S.E. (2017) Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities. Nat. Commun., 8, 497.
-
(2017)
Nat. Commun.
, vol.8
, pp. 497
-
-
Didychuk, A.L.1
Montemayor, E.J.2
Carrocci, T.J.3
DeLaitsch, A.T.4
Lucarelli, S.E.5
Westler, W.M.6
Brow, D.A.7
Hoskins, A.A.8
Butcher, S.E.9
-
16
-
-
85020635333
-
Crystal structures of U6 snRNA-specific terminal uridylyltransferase
-
Yamashita,S., Takagi,Y., Nagaike,T. and Tomita,K. (2017) Crystal structures of U6 snRNA-specific terminal uridylyltransferase. Nat. Commun., 8, 15788.
-
(2017)
Nat. Commun.
, vol.8
, pp. 15788
-
-
Yamashita, S.1
Takagi, Y.2
Nagaike, T.3
Tomita, K.4
-
17
-
-
77952762745
-
Identification of a homozygous deletion mutation in C16orf57 in a family with Clericuzio-type poikiloderma with neutropenia
-
Tanaka,A., Morice-Picard,F., Lacombe,D., Nagy,N., Hide,M., Taieb,A. and McGrath,J. (2010) Identification of a homozygous deletion mutation in C16orf57 in a family with Clericuzio-type poikiloderma with neutropenia. Am. J. Med. Genet. A, 152a, 1347–1348.
-
(2010)
Am. J. Med. Genet. A
, vol.152 a
, pp. 1347-1348
-
-
Tanaka, A.1
Morice-Picard, F.2
Lacombe, D.3
Nagy, N.4
Hide, M.5
Taieb, A.6
McGrath, J.7
-
18
-
-
73149112435
-
Targeted next-generation sequencing appoints c16orf57 as clericuzio-type poikiloderma with neutropenia gene
-
Volpi,L., Roversi,G., Colombo,E.A., Leijsten,N., Concolino,D., Calabria,A., Mencarelli,M.A., Fimiani,M., Macciardi,F., Pfundt,R. et al. (2010) Targeted next-generation sequencing appoints c16orf57 as clericuzio-type poikiloderma with neutropenia gene. Am. J. Hum. Genet., 86, 72–76.
-
(2010)
Am. J. Hum. Genet.
, vol.86
, pp. 72-76
-
-
Volpi, L.1
Roversi, G.2
Colombo, E.A.3
Leijsten, N.4
Concolino, D.5
Calabria, A.6
Mencarelli, M.A.7
Fimiani, M.8
Macciardi, F.9
Pfundt, R.10
-
19
-
-
77958461251
-
Mutations in C16orf57 and normal-length telomeres unify a subset of patients with dyskeratosis congenita, poikiloderma with neutropenia and Rothmund-Thomson syndrome
-
Walne,A.J., Vulliamy,T., Beswick,R., Kirwan,M. and Dokal,I. (2010) Mutations in C16orf57 and normal-length telomeres unify a subset of patients with dyskeratosis congenita, poikiloderma with neutropenia and Rothmund-Thomson syndrome. Hum. Mol. Genet., 19, 4453–4461.
-
(2010)
Hum. Mol. Genet.
, vol.19
, pp. 4453-4461
-
-
Walne, A.J.1
Vulliamy, T.2
Beswick, R.3
Kirwan, M.4
Dokal, I.5
-
20
-
-
84938990505
-
Human Mpn1 promotes post-transcriptional processing and stability of U6atac
-
Shchepachev,V., Wischnewski,H., Soneson,C., Arnold,A.W. and Azzalin,C.M. (2015) Human Mpn1 promotes post-transcriptional processing and stability of U6atac. FEBS Lett., 589, 2417–2423.
-
(2015)
FEBS Lett
, vol.589
, pp. 2417-2423
-
-
Shchepachev, V.1
Wischnewski, H.2
Soneson, C.3
Arnold, A.W.4
Azzalin, C.M.5
-
21
-
-
84966438529
-
Phosphorylation regulates the Star-PAP-PIPKIalpha interaction and directs specificity toward mRNA targets
-
Mohan,N., Sudheesh,A.P., Francis,N., Anderson,R. and Laishram,R.S. (2015) Phosphorylation regulates the Star-PAP-PIPKIalpha interaction and directs specificity toward mRNA targets. Nucleic Acids Res., 43, 7005–7020.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 7005-7020
-
-
Mohan, N.1
Sudheesh, A.P.2
Francis, N.3
Anderson, R.4
Laishram, R.S.5
-
22
-
-
84902679503
-
Poly(A) polymerase (PAP) diversity in gene expression–star-PAP vs canonical PAP
-
Laishram,R.S. (2014) Poly(A) polymerase (PAP) diversity in gene expression–star-PAP vs canonical PAP. FEBS Lett., 588, 2185–2197.
-
(2014)
FEBS Lett
, vol.588
, pp. 2185-2197
-
-
Laishram, R.S.1
-
23
-
-
80054076505
-
CKI isoforms alpha and epsilon regulate Star-PAP target messages by controlling Star-PAP poly(A) polymerase activity and phosphoinositide stimulation
-
Laishram,R.S., Barlow,C.A. and Anderson,R.A. (2011) CKI isoforms alpha and epsilon regulate Star-PAP target messages by controlling Star-PAP poly(A) polymerase activity and phosphoinositide stimulation. Nucleic Acids Res., 39, 7961–7973.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 7961-7973
-
-
Laishram, R.S.1
Barlow, C.A.2
Anderson, R.A.3
-
24
-
-
39749101733
-
A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs
-
Mellman,D.L., Gonzales,M.L., Song,C., Barlow,C.A., Wang,P., Kendziorski,C. and Anderson,R.A. (2008) A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs. Nature, 451, 1013–1017.
-
(2008)
Nature
, vol.451
, pp. 1013-1017
-
-
Mellman, D.L.1
Gonzales, M.L.2
Song, C.3
Barlow, C.A.4
Wang, P.5
Kendziorski, C.6
Anderson, R.A.7
-
25
-
-
45549089981
-
CKIalpha is associated with and phosphorylates star-PAP and is also required for expression of select star-PAP target messenger RNAs
-
Gonzales,M.L., Mellman,D.L. and Anderson,R.A. (2008) CKIalpha is associated with and phosphorylates star-PAP and is also required for expression of select star-PAP target messenger RNAs. J. Biol. Chem., 283, 12665–12673.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 12665-12673
-
-
Gonzales, M.L.1
Mellman, D.L.2
Anderson, R.A.3
-
26
-
-
0036920683
-
Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily
-
Mazumder,R., Iyer,L.M., Vasudevan,S. and Aravind,L. (2002) Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily. Nucleic Acids Res., 30, 5229–5243.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5229-5243
-
-
Mazumder, R.1
Iyer, L.M.2
Vasudevan, S.3
Aravind, L.4
-
27
-
-
0029906970
-
The 2-5 RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption
-
Arn,E.A. and Abelson,J.N. (1996) The 2-5 RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption. J. Biol. Chem., 271, 31145–31153.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 31145-31153
-
-
Arn, E.A.1
Abelson, J.N.2
-
28
-
-
0034669054
-
Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction
-
Hofmann,A., Zdanov,A., Genschik,P., Ruvinov,S., Filipowicz,W. and Wlodawer,A. (2000) Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction. EMBO J., 19, 6207–6217.
-
(2000)
EMBO J
, vol.19
, pp. 6207-6217
-
-
Hofmann, A.1
Zdanov, A.2
Genschik, P.3
Ruvinov, S.4
Filipowicz, W.5
Wlodawer, A.6
-
29
-
-
0038206596
-
Crystal structure of the 2-5 RNA ligase from Thermus thermophilus HB8
-
Kato,M., Shirouzu,M., Terada,T., Yamaguchi,H., Murayama,K., Sakai,H., Kuramitsu,S. and Yokoyama,S. (2003) Crystal structure of the 2-5 RNA ligase from Thermus thermophilus HB8. J. Mol. Biol., 329, 903–911.
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 903-911
-
-
Kato, M.1
Shirouzu, M.2
Terada, T.3
Yamaguchi, H.4
Murayama, K.5
Sakai, H.6
Kuramitsu, S.7
Yokoyama, S.8
-
30
-
-
0242582918
-
Genetic and biochemical analysis of the functional domains of yeast tRNA ligase
-
Sawaya,R., Schwer,B. and Shuman,S. (2003) Genetic and biochemical analysis of the functional domains of yeast tRNA ligase. J. Biol. Chem., 278, 43928–43938.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 43928-43938
-
-
Sawaya, R.1
Schwer, B.2
Shuman, S.3
-
31
-
-
84908245793
-
Murine AKAP7 has a 2,5-phosphodiesterase domain that can complement an inactive murine coronavirus ns2 gene
-
Gusho,E., Zhang,R., Jha,B.K., Thornbrough,J.M., Dong,B., Gaughan,C., Elliott,R., Weiss,S.R. and Silverman,R.H. (2014) Murine AKAP7 has a 2,5-phosphodiesterase domain that can complement an inactive murine coronavirus ns2 gene. Mbio, 5, e01312-14.
-
(2014)
Mbio
, vol.5
, pp. e01312-e01314
-
-
Gusho, E.1
Zhang, R.2
Jha, B.K.3
Thornbrough, J.M.4
Dong, B.5
Gaughan, C.6
Elliott, R.7
Weiss, S.R.8
Silverman, R.H.9
-
32
-
-
84908121427
-
Structure and mechanism of E. Coli RNA 2,3-cyclic phosphodiesterase
-
Remus,B.S., Jacewicz,A. and Shuman,S. (2014) Structure and mechanism of E. coli RNA 2,3-cyclic phosphodiesterase. RNA, 20, 1697–1705.
-
(2014)
RNA
, vol.20
, pp. 1697-1705
-
-
Remus, B.S.1
Jacewicz, A.2
Shuman, S.3
-
33
-
-
0023691425
-
Genetic applications of an inverse polymerase chain reaction
-
Ochman,H., Gerber,A.S. and Hartl,D.L. (1988) Genetic applications of an inverse polymerase chain reaction. Genetics, 120, 621–623.
-
(1988)
Genetics
, vol.120
, pp. 621-623
-
-
Ochman, H.1
Gerber, A.S.2
Hartl, D.L.3
-
36
-
-
34447508216
-
Phaser crystallographic software
-
McCoy,A.J., Grosse-Kunstleve,R.W., Adams,P.D., Winn,M.D., Storoni,L.C. and Read,R.J. (2007) Phaser crystallographic software. J. Appl. Crystallogr., 40, 658–674.
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
37
-
-
77949535720
-
Features and development of Coot
-
Emsley,P., Lohkamp,B., Scott,W.G. and Cowtan,K. (2010) Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr., 66, 486–501.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
38
-
-
76449098262
-
Phenix: A comprehensive Python-based system for macromolecular structure solution
-
Adams,P.D., Afonine,P.V., Bunkoczi,G., Chen,V.B., Davis,I.W., Echols,N., Headd,J.J., Hung,L.W., Kapral,G.J., Grosse-Kunstleve,R.W. et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr., 66, 213–221.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
39
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix.refine
-
Afonine,P.V., Grosse-Kunstleve,R.W., Echols,N., Headd,J.J., Moriarty,N.W., Mustyakimov,M., Terwilliger,T.C., Urzhumtsev,A., Zwart,P.H. and Adams,P.D. (2012) Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallogr. D Biol. Crystallogr., 68, 352–367.
-
(2012)
Acta Crystallogr. D Biol. Crystallogr.
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
Terwilliger, T.C.7
Urzhumtsev, A.8
Zwart, P.H.9
Adams, P.D.10
-
40
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov,G.N., Vagin,A.A. and Dodson,E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr., 53, 240–255.
-
(1997)
Acta Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
41
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn,M.D., Ballard,C.C., Cowtan,K.D., Dodson,E.J., Emsley,P., Evans,P.R., Keegan,R.M., Krissinel,E.B., Leslie,A.G., McCoy,A. et al. (2011) Overview of the CCP4 suite and current developments. Acta Crystallogr. D Biol. Crystallogr., 67, 235–242.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.9
McCoy, A.10
-
42
-
-
0023651444
-
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
-
Milligan,J.F., Groebe,D.R., Witherell,G.W. and Uhlenbeck,O.C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res., 15, 8783–8798.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 8783-8798
-
-
Milligan, J.F.1
Groebe, D.R.2
Witherell, G.W.3
Uhlenbeck, O.C.4
-
43
-
-
84965038758
-
Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly
-
Didychuk,A.L., Montemayor,E.J., Brow,D.A. and Butcher,S.E. (2016) Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly. Nucleic Acids Res., 44, 1398–1410.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. 1398-1410
-
-
Didychuk, A.L.1
Montemayor, E.J.2
Brow, D.A.3
Butcher, S.E.4
-
44
-
-
67650500988
-
CHARMM: The biomolecular simulation program
-
Brooks,B.R., Brooks,C.L. 3rd, Mackerell,A.D. Jr, Nilsson,L., Petrella,R.J., Roux,B., Won,Y., Archontis,G., Bartels,C., Boresch,S. et al. (2009) CHARMM: the biomolecular simulation program. J. Comput. Chem., 30, 1545–1614.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks, C.L.2
Mackerell, A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
-
45
-
-
84865723813
-
Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone phi, psi and side-chain chi(1) and chi(2) dihedral angles
-
Best,R.B., Zhu,X., Shim,J., Lopes,P.E., Mittal,J., Feig,M. and Mackerell,A.D. Jr. (2012) Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone phi, psi and side-chain chi(1) and chi(2) dihedral angles. J. Chem. Theory Comput., 8, 3257–3273.
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 3257-3273
-
-
Best, R.B.1
Zhu, X.2
Shim, J.3
Lopes, P.E.4
Mittal, J.5
Feig, M.6
Mackerell, A.D.7
-
46
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell,A.D., Bashford,D., Bellott,M., Dunbrack,R.L., Evanseck,J.D., Field,M.J., Fischer,S., Gao,J., Guo,H., Ha,S. et al. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B, 102, 3586–3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
-
47
-
-
84872152631
-
OpenMM 4: A reusable, extensible, hardware independent library for high performance molecular simulation
-
Eastman,P., Friedrichs,M.S., Chodera,J.D., Radmer,R.J., Bruns,C.M., Ku,J.P., Beauchamp,K.A., Lane,T.J., Wang,L.P., Shukla,D. et al. (2013) OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation. J. Chem. Theory Comput., 9, 461–469.
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 461-469
-
-
Eastman, P.1
Friedrichs, M.S.2
Chodera, J.D.3
Radmer, R.J.4
Bruns, C.M.5
Ku, J.P.6
Beauchamp, K.A.7
Lane, T.J.8
Wang, L.P.9
Shukla, D.10
-
48
-
-
85008681430
-
QM/MM analysis of transition states and transition state analogues in metalloenzymes
-
Roston,D. and Cui,Q. (2016) QM/MM Analysis of Transition States and Transition State Analogues in Metalloenzymes. Methods Enzymol., 577, 213–250.
-
(2016)
Methods Enzymol
, vol.577
, pp. 213-250
-
-
Roston, D.1
Cui, Q.2
-
49
-
-
84987811313
-
Substrate and transition state binding in alkaline phosphatase analyzed by computation of oxygen isotope effects
-
Roston,D. and Cui,Q. (2016) Substrate and transition state binding in alkaline phosphatase analyzed by computation of oxygen isotope effects. J. Am. Chem. Soc., 138, 11946–11957.
-
(2016)
J. Am. Chem. Soc.
, vol.138
, pp. 11946-11957
-
-
Roston, D.1
Cui, Q.2
-
50
-
-
84973656565
-
Leaving group ability observably affects transition state structure in a single enzyme active site
-
Roston,D., Demapan,D. and Cui,Q. (2016) Leaving group ability observably affects transition state structure in a single enzyme active site. J. Am. Chem. Soc., 138, 7386–7394.
-
(2016)
J. Am. Chem. Soc.
, vol.138
, pp. 7386-7394
-
-
Roston, D.1
Demapan, D.2
Cui, Q.3
-
51
-
-
85015615453
-
Regulation and plasticity of catalysis in enzymes: Insights from analysis of mechanochemical coupling in myosin
-
Lu,X., Ovchinnikov,V., Demapan,D., Roston,D. and Cui,Q. (2017) Regulation and plasticity of catalysis in enzymes: insights from analysis of mechanochemical coupling in myosin. Biochemistry, 56, 1482–1497.
-
(2017)
Biochemistry
, vol.56
, pp. 1482-1497
-
-
Lu, X.1
Ovchinnikov, V.2
Demapan, D.3
Roston, D.4
Cui, Q.5
-
52
-
-
0035249196
-
Generalized solvent boundary potential for computer simulations
-
Im,W., Berneche,S. and Roux,B. (2001) Generalized solvent boundary potential for computer simulations. J. Chem. Phys., 114, 2924–2937.
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 2924-2937
-
-
Im, W.1
Berneche, S.2
Roux, B.3
-
53
-
-
79954547473
-
DFTB3: Extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB)
-
Gaus,M., Cui,Q. and Elstner,M. (2012) DFTB3: extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB). J. Chem. Theory Comput., 7, 931–948.
-
(2012)
J. Chem. Theory Comput.
, vol.7
, pp. 931-948
-
-
Gaus, M.1
Cui, Q.2
Elstner, M.3
-
54
-
-
84898462014
-
Parameterization of DFTB3/3OB for sulfur and phosphorus for chemical and biological applications
-
Gaus,M., Lu,X., Elstner,M. and Cui,Q. (2014) Parameterization of DFTB3/3OB for sulfur and phosphorus for chemical and biological applications. J. Chem. Theory Comput., 10, 1518–1537.
-
(2014)
J. Chem. Theory Comput.
, vol.10
, pp. 1518-1537
-
-
Gaus, M.1
Lu, X.2
Elstner, M.3
Cui, Q.4
-
55
-
-
84921507266
-
Parametrization of DFTB3/3OB for magnesium and zinc for chemical and biological applications
-
Lu,X., Gaus,M., Elstner,M. and Cui,Q. (2015) Parametrization of DFTB3/3OB for magnesium and zinc for chemical and biological applications. J. Phys. Chem. B, 119, 1062–1082.
-
(2015)
J. Phys. Chem. B
, vol.119
, pp. 1062-1082
-
-
Lu, X.1
Gaus, M.2
Elstner, M.3
Cui, Q.4
-
56
-
-
0035138648
-
A QM/MM implementation of the self-consistent charge density functional tight binding (SCC-DFTB) method
-
Cui,Q., Elstner,M., Kaxiras,E., Frauenheim,T. and Karplus,M. (2001) A QM/MM implementation of the self-consistent charge density functional tight binding (SCC-DFTB) method. J. Phys. Chem. B, 105, 569–585.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 569-585
-
-
Cui, Q.1
Elstner, M.2
Kaxiras, E.3
Frauenheim, T.4
Karplus, M.5
-
57
-
-
84865066112
-
The solvation structure of Na(+) and K(+) in liquid water determined from high level ab initio molecular dynamics simulations
-
Rowley,C.N. and Roux,B. (2012) The solvation structure of Na(+) and K(+) in liquid water determined from high level ab initio molecular dynamics simulations. J. Chem. Theory Comput., 8, 3526–3535.
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 3526-3535
-
-
Rowley, C.N.1
Roux, B.2
-
58
-
-
69349100797
-
Plumed: A portable plugin for free-energy calculations with molecular dynamics
-
Bonomi,M., Branduardi,D., Bussi,G., Camilloni,C., Provasi,D., Raiteri,P., Donadio,D., Marinelli,F., Pietrucci,F., Broglia,R.A. et al. (2009) PLUMED: a portable plugin for free-energy calculations with molecular dynamics. Comput. Phys. Commun., 180, 1961–1972.
-
(2009)
Comput. Phys. Commun.
, vol.180
, pp. 1961-1972
-
-
Bonomi, M.1
Branduardi, D.2
Bussi, G.3
Camilloni, C.4
Provasi, D.5
Raiteri, P.6
Donadio, D.7
Marinelli, F.8
Pietrucci, F.9
Broglia, R.A.10
-
59
-
-
31544463548
-
Toward theoretical analyis of long-range proton transfer kinetics in biomolecular pumps
-
Konig,P.H., Ghosh,N., Hoffmann,M., Elstner,M., Tajkhorshid,E., Frauenheim,T. and Cui,Q. (2006) Toward theoretical analyis of long-range proton transfer kinetics in biomolecular pumps. J. Phys. Chem. A, 110, 548–563.
-
(2006)
J. Phys. Chem. A
, vol.110
, pp. 548-563
-
-
Konig, P.H.1
Ghosh, N.2
Hoffmann, M.3
Elstner, M.4
Tajkhorshid, E.5
Frauenheim, T.6
Cui, Q.7
-
60
-
-
36148963327
-
An integrated path integral and free-energy perturbation-umbrella sampling method for computing kinetic isotope effects of chemical reactions in solution and in enzymes
-
Major,D.T. and Gao,J.L. (2007) An integrated path integral and free-energy perturbation-umbrella sampling method for computing kinetic isotope effects of chemical reactions in solution and in enzymes. J. Chem. Theory Comput., 3, 949–960.
-
(2007)
J. Chem. Theory Comput.
, vol.3
, pp. 949-960
-
-
Major, D.T.1
Gao, J.L.2
-
61
-
-
84926460459
-
The n → pi* interaction: A rapidly emerging non-covalent interaction
-
Singh,S.K. and Das,A. (2015) The n → pi* interaction: a rapidly emerging non-covalent interaction. Phys. Chem. Chem. Phys., 17, 9596–9612.
-
(2015)
Phys. Chem. Chem. Phys.
, vol.17
, pp. 9596-9612
-
-
Singh, S.K.1
Das, A.2
-
62
-
-
84892983046
-
QM/MM simulation (B3LYP) of the RNase A cleavage-transesterification reaction supports a triester A(N) + D(N) associative mechanism with an O2 H internal proton transfer
-
Elsasser,B., Fels,G. and Weare,J.H. (2014) QM/MM simulation (B3LYP) of the RNase A cleavage-transesterification reaction supports a triester A(N) + D(N) associative mechanism with an O2 H internal proton transfer. J. Am. Chem. Soc., 136, 927–936.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 927-936
-
-
Elsasser, B.1
Fels, G.2
Weare, J.H.3
-
63
-
-
33748591572
-
Enzymatic mechanisms of phosphate and sulfate transfer
-
Cleland,W.W. and Hengge,A.C. (2006) Enzymatic mechanisms of phosphate and sulfate transfer. Chem. Rev., 106, 3252–3278.
-
(2006)
Chem. Rev.
, vol.106
, pp. 3252-3278
-
-
Cleland, W.W.1
Hengge, A.C.2
-
64
-
-
38349065198
-
The use of solvent isotope effects in the pursuit of enzyme mechanisms
-
Schowen,R.L. (2007) The use of solvent isotope effects in the pursuit of enzyme mechanisms. J. Labelled Compd. Rad., 50, 1052–1062.
-
(2007)
J. Labelled Compd. Rad.
, vol.50
, pp. 1052-1062
-
-
Schowen, R.L.1
-
65
-
-
79959432785
-
Biological phosphoryl-transfer reactions: Understanding mechanism and catalysis
-
Lassila,J.K., Zalatan,J.G. and Herschlag,D. (2011) Biological phosphoryl-transfer reactions: understanding mechanism and catalysis. Annu. Rev. Biochem., 80, 669–702.
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 669-702
-
-
Lassila, J.K.1
Zalatan, J.G.2
Herschlag, D.3
-
66
-
-
0029286626
-
An element in human U6 RNA destabilizes the U4/U6 spliceosomal RNA complex
-
Brow,D.A. and Vidaver,R.M. (1995) An element in human U6 RNA destabilizes the U4/U6 spliceosomal RNA complex. RNA, 1, 122–131.
-
(1995)
RNA
, vol.1
, pp. 122-131
-
-
Brow, D.A.1
Vidaver, R.M.2
-
67
-
-
84901943586
-
Core structure of the U6 small nuclear ribonucleoprotein at 1.7-A resolution
-
Montemayor,E.J., Curran,E.C., Liao,H.H., Andrews,K.L., Treba,C.N., Butcher,S.E. and Brow,D.A. (2014) Core structure of the U6 small nuclear ribonucleoprotein at 1.7-A resolution. Nat. Struct. Mol. Biol., 21, 544–551.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 544-551
-
-
Montemayor, E.J.1
Curran, E.C.2
Liao, H.H.3
Andrews, K.L.4
Treba, C.N.5
Butcher, S.E.6
Brow, D.A.7
-
68
-
-
85008178720
-
Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core
-
Montemayor,E.J., Didychuk,A.L., Liao,H., Hu,P., Brow,D.A. and Butcher,S.E. (2017) Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core. Acta Crystallogr. D Struct. Biol., 73, 1–8.
-
(2017)
Acta Crystallogr. D Struct. Biol.
, vol.73
, pp. 1-8
-
-
Montemayor, E.J.1
Didychuk, A.L.2
Liao, H.3
Hu, P.4
Brow, D.A.5
Butcher, S.E.6
-
69
-
-
85046474536
-
Architecture of the U6 snRNP reveals specific recognition of 3-end processed U6 snRNA
-
Montemayor,E.J., Didychuk,A.L., Yake,A.D., Sidhu,G.K., Brow,D.A. and Butcher,S.E. (2018) Architecture of the U6 snRNP reveals specific recognition of 3-end processed U6 snRNA. Nat. Commun., 9, 1749.
-
(2018)
Nat. Commun.
, vol.9
, pp. 1749
-
-
Montemayor, E.J.1
Didychuk, A.L.2
Yake, A.D.3
Sidhu, G.K.4
Brow, D.A.5
Butcher, S.E.6
-
70
-
-
85041137821
-
Structure and conformational dynamics of the human spliceosomal B(ACT) complex
-
Haselbach,D., Komarov,I., Agafonov,D.E., Hartmuth,K., Graf,B., Dybkov,O., Urlaub,H., Kastner,B., Luhrmann,R. and Stark,H. (2018) Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex. Cell, 172, 454–464.
-
(2018)
Cell
, vol.172
, pp. 454-464
-
-
Haselbach, D.1
Komarov, I.2
Agafonov, D.E.3
Hartmuth, K.4
Graf, B.5
Dybkov, O.6
Urlaub, H.7
Kastner, B.8
Luhrmann, R.9
Stark, H.10
-
71
-
-
0027400852
-
Mammalian U6 small nuclear RNA undergoes 3 end modifications within the spliceosome
-
Tazi,J., Forne,T., Jeanteur,P., Cathala,G. and Brunel,C. (1993) Mammalian U6 small nuclear RNA undergoes 3 end modifications within the spliceosome. Mol. Cell. Biol., 13, 1641–1650.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 1641-1650
-
-
Tazi, J.1
Forne, T.2
Jeanteur, P.3
Cathala, G.4
Brunel, C.5
-
72
-
-
9144257235
-
Assigning function to yeast proteins by integration of technologies
-
Hazbun,T.R., Malmstrom,L., Anderson,S., Graczyk,B.J., Fox,B., Riffle,M., Sundin,B.A., Aranda,J.D., McDonald,W.H., Chiu,C.H. et al. (2003) Assigning function to yeast proteins by integration of technologies. Mol. Cell, 12, 1353–1365.
-
(2003)
Mol. Cell
, vol.12
, pp. 1353-1365
-
-
Hazbun, T.R.1
Malmstrom, L.2
Anderson, S.3
Graczyk, B.J.4
Fox, B.5
Riffle, M.6
Sundin, B.A.7
Aranda, J.D.8
McDonald, W.H.9
Chiu, C.H.10
-
73
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin,A.C., Aloy,P., Grandi,P., Krause,R., Boesche,M., Marzioch,M., Rau,C., Jensen,L.J., Bastuck,S., Dumpelfeld,B. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631–636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
-
74
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan,N.J., Cagney,G., Yu,H., Zhong,G., Guo,X., Ignatchenko,A., Li,J., Pu,S., Datta,N., Tikuisis,A.P. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature, 440, 637–643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
-
75
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu,H., Braun,P., Yildirim,M.A., Lemmens,I., Venkatesan,K., Sahalie,J., Hirozane-Kishikawa,T., Gebreab,F., Li,N., Simonis,N. et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science, 322, 104–110.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
Sahalie, J.6
Hirozane-Kishikawa, T.7
Gebreab, F.8
Li, N.9
Simonis, N.10
-
76
-
-
85034416243
-
Structure of the post-catalytic spliceosome from Saccharomyces cerevisiae
-
Bai,R., Yan,C., Wan,R., Lei,J. and Shi,Y. (2017) Structure of the post-catalytic spliceosome from Saccharomyces cerevisiae. Cell, 171, 1589–1598.
-
(2017)
Cell
, vol.171
, pp. 1589-1598
-
-
Bai, R.1
Yan, C.2
Wan, R.3
Lei, J.4
Shi, Y.5
-
77
-
-
85034431948
-
Postcatalytic spliceosome structure reveals mechanism of 3-splice site selection
-
Wilkinson,M.E., Fica,S.M., Galej,W.P., Norman,C.M., Newman,A.J. and Nagai,K. (2017) Postcatalytic spliceosome structure reveals mechanism of 3-splice site selection. Science, 358, 1283–1288.
-
(2017)
Science
, vol.358
, pp. 1283-1288
-
-
Wilkinson, M.E.1
Fica, S.M.2
Galej, W.P.3
Norman, C.M.4
Newman, A.J.5
Nagai, K.6
-
78
-
-
0029595298
-
Limits to catalysis by ribonuclease A
-
Thompson,J.E., Kutateladze,T.G., Schuster,M.C., Venegas,F.D., Messmore,J.M. and Raines,R.T. (1995) Limits to catalysis by ribonuclease A. Bioorg. Chem., 23, 471–481.
-
(1995)
Bioorg. Chem.
, vol.23
, pp. 471-481
-
-
Thompson, J.E.1
Kutateladze, T.G.2
Schuster, M.C.3
Venegas, F.D.4
Messmore, J.M.5
Raines, R.T.6
-
79
-
-
0028252696
-
Ribonuclease revisited: Catalysis via the classical general acid-base mechanism or a triester-like mechanism?
-
Herschlag,D. (1994) Ribonuclease revisited: catalysis via the classical general acid-base mechanism or a triester-like mechanism? J. Am. Chem. Soc., 116, 11631–11635.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 11631-11635
-
-
Herschlag, D.1
-
80
-
-
0037378779
-
Catalysis by ribonuclease A is limited by the rate of substrate association
-
Park,C. and Raines,R.T. (2003) Catalysis by ribonuclease A is limited by the rate of substrate association. Biochemistry, 42, 3509–3518.
-
(2003)
Biochemistry
, vol.42
, pp. 3509-3518
-
-
Park, C.1
Raines, R.T.2
-
81
-
-
0028983940
-
Ribonuclease A: Revealing structure-function relationships with semisynthesis
-
Messmore,J.M., Fuchs,D.N. and Raines,R.T. (1995) Ribonuclease a: revealing structure-function relationships with semisynthesis. J. Am. Chem. Soc., 117, 8057–8060.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 8057-8060
-
-
Messmore, J.M.1
Fuchs, D.N.2
Raines, R.T.3
-
82
-
-
0030980262
-
X-ray structure of a ribonuclease A-uridine vanadate complex at 1.3 A resolution
-
Ladner,J.E., Wladkowski,B.D., Svensson,L.A., Sjolin,L. and Gilliland,G.L. (1997) X-ray structure of a ribonuclease A-uridine vanadate complex at 1.3 A resolution. Acta Crystallogr D Biol. Crystallogr., 53, 290–301.
-
(1997)
Acta Crystallogr D Biol. Crystallogr.
, vol.53
, pp. 290-301
-
-
Ladner, J.E.1
Wladkowski, B.D.2
Svensson, L.A.3
Sjolin, L.4
Gilliland, G.L.5
-
83
-
-
0001005285
-
Ribonuclease A
-
Raines,R.T. (1998) Ribonuclease A. Chem. Rev., 98, 1045–1066.
-
(1998)
Chem. Rev.
, vol.98
, pp. 1045-1066
-
-
Raines, R.T.1
-
84
-
-
84881430781
-
Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2-O-transphosphorylation
-
Gu,H., Zhang,S., Wong,K.Y., Radak,B.K., Dissanayake,T., Kellerman,D.L., Dai,Q., Miyagi,M., Anderson,V.E., York,D.M. et al. (2013) Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2-O-transphosphorylation. Proc. Natl. Acad. Sci. U.S.A., 110, 13002–13007.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 13002-13007
-
-
Gu, H.1
Zhang, S.2
Wong, K.Y.3
Radak, B.K.4
Dissanayake, T.5
Kellerman, D.L.6
Dai, Q.7
Miyagi, M.8
Anderson, V.E.9
York, D.M.10
-
85
-
-
33746634704
-
Transcript-assisted transcriptional proofreading
-
Zenkin,N., Yuzenkova,Y. and Severinov,K. (2006) Transcript-assisted transcriptional proofreading. Science, 313, 518–520.
-
(2006)
Science
, vol.313
, pp. 518-520
-
-
Zenkin, N.1
Yuzenkova, Y.2
Severinov, K.3
-
86
-
-
0033543235
-
Toward rational design of ribonuclease inhibitors: High-resolution crystal structure of a ribonuclease A complex with a potent 3,5-pyrophosphate-linked dinucleotide inhibitor
-
Leonidas,D.D., Shapiro,R., Irons,L.I., Russo,N. and Acharya,K.R. (1999) Toward rational design of ribonuclease inhibitors: high-resolution crystal structure of a ribonuclease A complex with a potent 3,5-pyrophosphate-linked dinucleotide inhibitor. Biochemistry, 38, 10287–10297.
-
(1999)
Biochemistry
, vol.38
, pp. 10287-10297
-
-
Leonidas, D.D.1
Shapiro, R.2
Irons, L.I.3
Russo, N.4
Acharya, K.R.5
-
87
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
Rupert,P.B. and Ferre-D’Amare,A.R. (2001) Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature, 410, 780–786.
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferre-D’Amare, A.R.2
-
88
-
-
33746228126
-
Tertiary contacts distant from the active site prime a ribozyme for catalysis
-
Martick,M. and Scott,W.G. (2006) Tertiary contacts distant from the active site prime a ribozyme for catalysis. Cell, 126, 309–320.
-
(2006)
Cell
, vol.126
, pp. 309-320
-
-
Martick, M.1
Scott, W.G.2
-
89
-
-
84944877528
-
Crystal structure of the Varkud satellite ribozyme
-
Suslov,N.B., DasGupta,S., Huang,H., Fuller,J.R., Lilley,D.M., Rice,P.A. and Piccirilli,J.A. (2015) Crystal structure of the Varkud satellite ribozyme. Nat. Chem. Biol., 11, 840–846.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 840-846
-
-
Suslov, N.B.1
DasGupta, S.2
Huang, H.3
Fuller, J.R.4
Lilley, D.M.5
Rice, P.A.6
Piccirilli, J.A.7
-
90
-
-
85044950081
-
The life of U6 small nuclear RNA, from cradle to grave
-
Didychuk,A.L., Butcher,S.E. and Brow,D.A. (2018) The life of U6 small nuclear RNA, from cradle to grave. RNA, 24, 437–460.
-
(2018)
RNA
, vol.24
, pp. 437-460
-
-
Didychuk, A.L.1
Butcher, S.E.2
Brow, D.A.3
|