-
1
-
-
0003880161
-
-
Garland Publishing, Inc. New York.
-
Alberts, B.; Bray, D.; Lewis, J.; Raff, M.; Roberts, K.; Watson, J. D. Molecular Biology of the Cell; Garland Publishing, Inc.: New York, 1994.
-
(1994)
Molecular Biology of the Cell
-
-
Alberts, B.1
Bray, D.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Watson, J.D.6
-
2
-
-
8844275956
-
Sulfatase: Structure, mechanism, biological activity, inhibition and synthetic utility
-
Hanson, S. R.; Best, M. D.; Wong, C. H. Sulfatase: structure, mechanism, biological activity, inhibition and synthetic utility Angew. Chem., Int. Ed. 2004, 43, 5736-5763
-
(2004)
Angew. Chem., Int. Ed.
, vol.43
, pp. 5736-5763
-
-
Hanson, S.R.1
Best, M.D.2
Wong, C.H.3
-
3
-
-
7644219892
-
State of understanding of Nafion
-
Mauritz, K. A.; Moore, R. B. State of understanding of Nafion Chem. Rev. 2004, 104, 4535-4585
-
(2004)
Chem. Rev.
, vol.104
, pp. 4535-4585
-
-
Mauritz, K.A.1
Moore, R.B.2
-
4
-
-
33846219497
-
Functionalized acenes and heteroacenes for organic electronics
-
Anthony, J. E. Functionalized acenes and heteroacenes for organic electronics Chem. Rev. 2006, 106, 5028-5048
-
(2006)
Chem. Rev.
, vol.106
, pp. 5028-5048
-
-
Anthony, J.E.1
-
5
-
-
0023099216
-
Why nature chose phosphates
-
Westheimer, F. H. Why nature chose phosphates Science 1987, 235, 1173-1178
-
(1987)
Science
, vol.235
, pp. 1173-1178
-
-
Westheimer, F.H.1
-
6
-
-
0018881742
-
Enzyme catalyzed phosphoryl transfer reactions
-
Knowles, J. R. Enzyme catalyzed phosphoryl transfer reactions Annu. Rev. Biochem. 1980, 49, 877-919
-
(1980)
Annu. Rev. Biochem.
, vol.49
, pp. 877-919
-
-
Knowles, J.R.1
-
7
-
-
33748591572
-
Enzymatic mechanisms of phosphate and sulfate transfer
-
Cleland, W. W.; Hengge, A. C. Enzymatic mechanisms of phosphate and sulfate transfer Chem. Rev. 2006, 106, 3252-3278
-
(2006)
Chem. Rev.
, vol.106
, pp. 3252-3278
-
-
Cleland, W.W.1
Hengge, A.C.2
-
8
-
-
0029022018
-
Mutations of Ras Genes in Human Tumors
-
Kiaris, H.; Spandidos, D. A. Mutations of Ras Genes in Human Tumors Int. J. Oncol. 1995, 7, 413-421
-
(1995)
Int. J. Oncol.
, vol.7
, pp. 413-421
-
-
Kiaris, H.1
Spandidos, D.A.2
-
9
-
-
34248591612
-
Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer
-
Roberts, P. J.; Der, C. J. Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer Oncogene 2007, 26, 3291-3310
-
(2007)
Oncogene
, vol.26
, pp. 3291-3310
-
-
Roberts, P.J.1
Der, C.J.2
-
10
-
-
0036527429
-
Protein kinases - The major drug targets of the twenty-first century?
-
Cohen, P. Protein kinases-the major drug targets of the twenty-first century? Nat. Rev. Drug Discovery 2002, 1, 309-315
-
(2002)
Nat. Rev. Drug Discovery
, vol.1
, pp. 309-315
-
-
Cohen, P.1
-
11
-
-
0034306450
-
Specificity and mechanism of action of some commonly used protein kinase inhibitors
-
Davies, S. P.; Reddy, H.; Caivano, M.; Cohen, P. Specificity and mechanism of action of some commonly used protein kinase inhibitors Biochem. J. 2000, 351, 95-105
-
(2000)
Biochem. J.
, vol.351
, pp. 95-105
-
-
Davies, S.P.1
Reddy, H.2
Caivano, M.3
Cohen, P.4
-
12
-
-
0035904293
-
Rapamycin's resurrection: A new way to target the cancer cell cycle
-
Garber, K. Rapamycin's resurrection: A new way to target the cancer cell cycle J. Natl. Cancer Inst. 2001, 93, 1517-1519
-
(2001)
J. Natl. Cancer Inst.
, vol.93
, pp. 1517-1519
-
-
Garber, K.1
-
13
-
-
33751266159
-
Design and development of signal transduction inhibitors for cancer treatment: Experience and challenges with kinase targets
-
Collins, I.; Workman, P. Design and development of signal transduction inhibitors for cancer treatment: Experience and challenges with kinase targets Curr. Signal Transduction Ther. 2006, 1, 13-23
-
(2006)
Curr. Signal Transduction Ther.
, vol.1
, pp. 13-23
-
-
Collins, I.1
Workman, P.2
-
14
-
-
36549063511
-
Enzymes as a special class of therapeutic target: Clinical drugs and modes of action
-
Robertson, J. G. Enzymes as a special class of therapeutic target: clinical drugs and modes of action Curr. Opin. Struct. Biol. 2007, 17, 674-679
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 674-679
-
-
Robertson, J.G.1
-
15
-
-
0036181649
-
Protein tyrosine phosphatases: Structure and function, substrate specificity, and inhibitor development
-
Zhang, Z. Y. Protein tyrosine phosphatases: Structure and function, substrate specificity, and inhibitor development Annu. Rev. Pharmacol. Toxicol. 2002, 42, 209-234
-
(2002)
Annu. Rev. Pharmacol. Toxicol.
, vol.42
, pp. 209-234
-
-
Zhang, Z.Y.1
-
16
-
-
84876224506
-
Why nature really chose phosphate
-
Kamerlin, S. C. L.; Sharma, P. K.; Prasad, R. B.; Warshel, A. Why nature really chose phosphate Q. Rev. Biophys. 2013, 46, 1-132
-
(2013)
Q. Rev. Biophys.
, vol.46
, pp. 1-132
-
-
Kamerlin, S.C.L.1
Sharma, P.K.2
Prasad, R.B.3
Warshel, A.4
-
17
-
-
33748263629
-
Pseudobond ab initio QM/MM approach and its applications to enzyme reactions
-
Zhang, Y. Pseudobond ab initio QM/MM approach and its applications to enzyme reactions Theor. Chem. Acc. 2006, 116, 43-50
-
(2006)
Theor. Chem. Acc.
, vol.116
, pp. 43-50
-
-
Zhang, Y.1
-
18
-
-
43949083733
-
Free Energies of Chemical Reactions in Solution and in Enzymes with Ab Initio Quantum Mechanics/Molecular Mechanics Methods
-
Hu, H.; Yang, W. T. Free Energies of Chemical Reactions in Solution and in Enzymes with Ab Initio Quantum Mechanics/Molecular Mechanics Methods Annu. Rev. Phys. Chem. 2008, 59, 573-601
-
(2008)
Annu. Rev. Phys. Chem.
, vol.59
, pp. 573-601
-
-
Hu, H.1
Yang, W.T.2
-
19
-
-
60349127442
-
QM/MM methods for biomolecular systems
-
Senn, H. M.; Thiel, W. QM/MM methods for biomolecular systems Angew. Chem., Int. Ed. 2009, 48, 1198-1229
-
(2009)
Angew. Chem., Int. Ed.
, vol.48
, pp. 1198-1229
-
-
Senn, H.M.1
Thiel, W.2
-
20
-
-
79959339177
-
Paradynamics: An Effective and Reliable Model for Ab lnitio QM/MM Free-Energy Calculations and Related Tasks
-
Plotnikov, N. V.; Kamerlin, S. C. L.; Warshel, A. Paradynamics: An Effective and Reliable Model for Ab lnitio QM/MM Free-Energy Calculations and Related Tasks J. Phys. Chem. B 2011, 115, 7950-7962
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 7950-7962
-
-
Plotnikov, N.V.1
Kamerlin, S.C.L.2
Warshel, A.3
-
21
-
-
48749103219
-
Extensive Conformational Transitions Are Required to Turn on ATP Hydrolysis in Myosin
-
Yang, Y.; Yu, H.; Cui, Q. Extensive Conformational Transitions Are Required to Turn On ATP Hydrolysis in Myosin J. Mol. Biol. 2008, 381, 1407-1420
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 1407-1420
-
-
Yang, Y.1
Yu, H.2
Cui, Q.3
-
22
-
-
78651371352
-
2+ Ion in the Reaction Coordinate of RNA Self-Cleavage Catalyzed by the Hammerhead Ribozyme
-
2+ Ion in the Reaction Coordinate of RNA Self-Cleavage Catalyzed by the Hammerhead Ribozyme J. Chem. Theory Comput. 2011, 7, 1-3
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 1-3
-
-
Wong, K.Y.1
Lee, T.S.2
York, D.M.3
-
23
-
-
84855669291
-
QM/MM analysis suggests that Alkaline Phosphatase (AP) and Nucleotide pyrophosphatase/phosphodiesterase (NPP) slightly tighten the transition state for phosphate diester hydrolysis relative to solution: Implication for catalytic promiscuity in the AP superfamily
-
Hou, G. H.; Cui, Q. QM/MM analysis suggests that Alkaline Phosphatase (AP) and Nucleotide pyrophosphatase/phosphodiesterase (NPP) slightly tighten the transition state for phosphate diester hydrolysis relative to solution: implication for catalytic promiscuity in the AP superfamily J. Am. Chem. Soc. 2012, 134, 229-246
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 229-246
-
-
Hou, G.H.1
Cui, Q.2
-
24
-
-
84880385206
-
Stabilization of Different Types of Transition States in a Single Enzyme Active Site: QM/MM Analysis of Enzymes in the Alkaline Phosphatase Superfamily
-
Hou, G. H.; Cui, Q. Stabilization of Different Types of Transition States in a Single Enzyme Active Site: QM/MM Analysis of Enzymes in the Alkaline Phosphatase Superfamily J. Am. Chem. Soc. 2013, 135, 10457-10469
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 10457-10469
-
-
Hou, G.H.1
Cui, Q.2
-
25
-
-
84881084908
-
Modeling catalytic promiscuity in the alkaline phosphatase superfamily
-
Duarte, F.; Amrein, B. A.; Kamerlin, S. C. L. Modeling catalytic promiscuity in the alkaline phosphatase superfamily Phys. Chem. Chem. Phys. 2013, 15, 11160-11177
-
(2013)
Phys. Chem. Chem. Phys.
, vol.15
, pp. 11160-11177
-
-
Duarte, F.1
Amrein, B.A.2
Kamerlin, S.C.L.3
-
26
-
-
79956114412
-
An SCC-DFTB/MD Study of the Adsorption of Zwitterionic Glycine on a Geminal Hydroxylated Silica Surface in an Explicit Water Environment
-
Zhao, Y. L.; Köppen, S.; Frauenheim, T. An SCC-DFTB/MD Study of the Adsorption of Zwitterionic Glycine on a Geminal Hydroxylated Silica Surface in an Explicit Water Environment J. Phys. Chem. C 2011, 115, 9615-9621
-
(2011)
J. Phys. Chem. C
, vol.115
, pp. 9615-9621
-
-
Zhao, Y.L.1
Köppen, S.2
Frauenheim, T.3
-
27
-
-
84887850314
-
An Explicit Consideration of Desolvation is Critical to Binding Free Energy Calculations of Charged Molecules at Ionic Surfaces
-
in press.
-
Mori, T.; Hamers, R. J.; Pedersen, J. A.; Cui, Q. An Explicit Consideration of Desolvation is Critical to Binding Free Energy Calculations of Charged Molecules at Ionic Surfaces. J. Chem. Theory Comput. 2013, 9, in press.
-
(2013)
J. Chem. Theory Comput.
, vol.9
-
-
Mori, T.1
Hamers, R.J.2
Pedersen, J.A.3
Cui, Q.4
-
28
-
-
0036889839
-
PDDG/PM3 and PDDG/MNDO: Improved semiempirical methods
-
Repasky, M. P.; Chandrasekhar, J.; Jorgensen, W. L. PDDG/PM3 and PDDG/MNDO: Improved semiempirical methods J. Comput. Chem. 2002, 23, 1601-1622
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 1601-1622
-
-
Repasky, M.P.1
Chandrasekhar, J.2
Jorgensen, W.L.3
-
29
-
-
0346850729
-
Towards a "next generation" neglect of diatomic differential overlap based semiempirical molecular orbital technique
-
Winget, P.; Selçuki, C.; Horn, A. H. C.; Martin, B.; Clark, T. Towards a "next generation" neglect of diatomic differential overlap based semiempirical molecular orbital technique Theor. Chem. Acc. 2003, 110, 254-266
-
(2003)
Theor. Chem. Acc.
, vol.110
, pp. 254-266
-
-
Winget, P.1
Selçuki, C.2
Horn, A.H.C.3
Martin, B.4
Clark, T.5
-
30
-
-
80052815998
-
Benchmarking semiempirical methods for thermochemistry, kinetics, and noncovalent interactions: OMx methods are almost as accurate and robust as DFT-GGA methods for organic molecules
-
Korth, M.; Thiel, W. Benchmarking semiempirical methods for thermochemistry, kinetics, and noncovalent interactions: OMx methods are almost as accurate and robust as DFT-GGA methods for organic molecules J. Chem. Theory Comput. 2011, 7, 2929-2936
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 2929-2936
-
-
Korth, M.1
Thiel, W.2
-
31
-
-
84857002725
-
Density-functional expansion methods: Grand challenges
-
Giese, T. J.; York, D. M. Density-functional expansion methods: Grand challenges Theor. Chem. Acc. 2012, 131, 1145
-
(2012)
Theor. Chem. Acc.
, vol.131
, pp. 1145
-
-
Giese, T.J.1
York, D.M.2
-
32
-
-
1542779956
-
Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties
-
Elstner, M.; Porezag, D.; Jungnickel, G.; Elsner, J.; Haugk, M.; Frauenheim, T.; Suhai, S.; Seifert, G. Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties Phys. Rev. B 1998, 58, 7260-7268
-
(1998)
Phys. Rev. B
, vol.58
, pp. 7260-7268
-
-
Elstner, M.1
Porezag, D.2
Jungnickel, G.3
Elsner, J.4
Haugk, M.5
Frauenheim, T.6
Suhai, S.7
Seifert, G.8
-
33
-
-
33748283200
-
The SCC-DFTB method and its application to biological systems
-
Elstner, M. The SCC-DFTB method and its application to biological systems Theor. Chem. Acc. 2006, 116, 316-325
-
(2006)
Theor. Chem. Acc.
, vol.116
, pp. 316-325
-
-
Elstner, M.1
-
34
-
-
33646356998
-
Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes
-
Riccardi, D.; Schaefer, P.; Yang, Y.; Yu, H.; Ghosh, N.; Prat-Resina, X.; König, P.; Li, G.; Xu, D.; Guo, H.; Elstner, M.; Cui, Q. Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes J. Phys. Chem. B 2006, 110, 6458-6469
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 6458-6469
-
-
Riccardi, D.1
Schaefer, P.2
Yang, Y.3
Yu, H.4
Ghosh, N.5
Prat-Resina, X.6
König, P.7
Li, G.8
Xu, D.9
Guo, H.10
Elstner, M.11
Cui, Q.12
-
35
-
-
0001257583
-
Construction of tight-binding-like potentials on the basis of density-functional theory: Application to carbon
-
Porezag, D.; Frauenheim, T.; Köhler, T.; Seifert, G.; Kaschner, R. Construction of tight-binding-like potentials on the basis of density-functional theory: Application to carbon Phys. Rev. B 1995, 51, 12947-12957
-
(1995)
Phys. Rev. B
, vol.51
, pp. 12947-12957
-
-
Porezag, D.1
Frauenheim, T.2
Köhler, T.3
Seifert, G.4
Kaschner, R.5
-
36
-
-
18644365762
-
Validation of the density-functional based tight-binding approximation method for the calculation of reaction energies and other data
-
Krüger, T.; Elstner, M.; Schiffels, P.; Frauenheim, T. Validation of the density-functional based tight-binding approximation method for the calculation of reaction energies and other data J. Chem. Phys. 2005, 122, 114110
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 114110
-
-
Krüger, T.1
Elstner, M.2
Schiffels, P.3
Frauenheim, T.4
-
37
-
-
34547428921
-
Looking at self-consistent-charge density functional tight binding from a semiempirical perspective
-
Otte, N.; Scholten, M.; Thiel, W. Looking at self-consistent-charge density functional tight binding from a semiempirical perspective J. Phys. Chem. A 2007, 111, 5751-5755
-
(2007)
J. Phys. Chem. A
, vol.111
, pp. 5751-5755
-
-
Otte, N.1
Scholten, M.2
Thiel, W.3
-
38
-
-
33846700979
-
Comparison of SCC-DFTB and NDDO-based semiempirical molecular orbital methods for organic molecules
-
Sattelmeyer, K. W.; Tirado-Rives, J.; Jorgensen, W. L. Comparison of SCC-DFTB and NDDO-based semiempirical molecular orbital methods for organic molecules J. Phys. Chem. A 2006, 110, 13551-13559
-
(2006)
J. Phys. Chem. A
, vol.110
, pp. 13551-13559
-
-
Sattelmeyer, K.W.1
Tirado-Rives, J.2
Jorgensen, W.L.3
-
39
-
-
0035978897
-
Application of an approximate density-functional method to sulfur containing compounds
-
Niehaus, T. A.; Elstner, M.; Frauenheim, T.; Suhai, S. Application of an approximate density-functional method to sulfur containing compounds J. Mol. Struct.: THEOCHEM 2001, 541, 185-194
-
(2001)
J. Mol. Struct.: THEOCHEM
, vol.541
, pp. 185-194
-
-
Niehaus, T.A.1
Elstner, M.2
Frauenheim, T.3
Suhai, S.4
-
40
-
-
0141566583
-
Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: Applications to structural and energetic analysis
-
Elstner, M.; Cui, Q.; Munih, P.; Kaxiras, E.; Frauenheim, T.; Karplus, M. Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: Applications to structural and energetic analysis J. Comput. Chem. 2003, 24, 565-581
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 565-581
-
-
Elstner, M.1
Cui, Q.2
Munih, P.3
Kaxiras, E.4
Frauenheim, T.5
Karplus, M.6
-
41
-
-
65249089684
-
Toward an Accurate Density-Functional Tight-Binding Description of Zinc-Containing Compounds
-
Moreira, N. H.; Dolgonos, G.; Aradi, B.; da Rosa, A. L.; Frauenheim, T. Toward an Accurate Density-Functional Tight-Binding Description of Zinc-Containing Compounds J. Chem. Theory Comput. 2009, 5, 605-614
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 605-614
-
-
Moreira, N.H.1
Dolgonos, G.2
Aradi, B.3
Da Rosa, A.L.4
Frauenheim, T.5
-
42
-
-
84860839601
-
A Complete Set of Self-Consistent Charge Density-Functional Tight-Binding Parametrization of Zinc Chalcogenides (ZnX; X=O, S, Se, and Te)
-
Saha, S.; Pal, S.; Sarkar, P.; Rosa, A. L.; Frauenheim, T. A Complete Set of Self-Consistent Charge Density-Functional Tight-Binding Parametrization of Zinc Chalcogenides (ZnX; X=O, S, Se, and Te) J. Comput. Chem. 2012, 33, 1165-1178
-
(2012)
J. Comput. Chem.
, vol.33
, pp. 1165-1178
-
-
Saha, S.1
Pal, S.2
Sarkar, P.3
Rosa, A.L.4
Frauenheim, T.5
-
43
-
-
58149235077
-
Description of phosphate hydrolysis reactions with the Self-Consistent-charge Density-Functional-Tight-Binding (SCC-DFTB) theory. 1. Parameterization
-
Yang, Y.; Yu, H.; York, D.; Elstner, M.; Cui, Q. Description of phosphate hydrolysis reactions with the Self-Consistent-charge Density-Functional-Tight- Binding (SCC-DFTB) theory. 1. Parameterization J. Chem. Theory Comput. 2008, 4, 2067-2084
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 2067-2084
-
-
Yang, Y.1
Yu, H.2
York, D.3
Elstner, M.4
Cui, Q.5
-
44
-
-
34547451681
-
Application of the computationally efficient self-consistent-charge density-functional tight-binding method to magnesium-containing molecules
-
Cai, Z.; Lopez, P.; Reimers, J. R.; Cui, Q.; Elstner, M. Application of the computationally efficient self-consistent-charge density-functional tight-binding method to magnesium-containing molecules J. Phys. Chem. A 2007, 111, 5743-5750
-
(2007)
J. Phys. Chem. A
, vol.111
, pp. 5743-5750
-
-
Cai, Z.1
Lopez, P.2
Reimers, J.R.3
Cui, Q.4
Elstner, M.5
-
45
-
-
84880013754
-
Parametrization of the SCC-DFTB Method for Halogens
-
Kubar, T.; Bodrog, Z.; Gaus, M.; Aradi, B.; Frauenheim, T.; Elstner, M. Parametrization of the SCC-DFTB Method for Halogens J. Chem. Theory Comput. 2013, 9, 2939-2949
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 2939-2949
-
-
Kubar, T.1
Bodrog, Z.2
Gaus, M.3
Aradi, B.4
Frauenheim, T.5
Elstner, M.6
-
46
-
-
36049006141
-
Parameter calibration of transition-metal elements for the spin-polarized self-consistent-charge density-functional tight-binding (DFTB) method: Sc, Ti, Fe, Co, and Ni
-
Zheng, G. S.; Witek, H. A.; Bobadova-Parvanova, P.; Irle, S.; Musaev, D. G.; Prabhakar, R.; Morokuma, K. Parameter calibration of transition-metal elements for the spin-polarized self-consistent-charge density-functional tight-binding (DFTB) method: Sc, Ti, Fe, Co, and Ni J. Chem. Theory Comput. 2007, 3, 1349-1367
-
(2007)
J. Chem. Theory Comput.
, vol.3
, pp. 1349-1367
-
-
Zheng, G.S.1
Witek, H.A.2
Bobadova-Parvanova, P.3
Irle, S.4
Musaev, D.G.5
Prabhakar, R.6
Morokuma, K.7
-
47
-
-
77950183357
-
An Improved Self-Consistent-Charge Density-Functional Tight-Binding (SCC-DFTB) Set of Parameters for Simulation of Bulk and Molecular Systems Involving Titanium
-
Dolgonos, G.; Aradi, B.; Moreira, N. H.; Frauenheim, T. An Improved Self-Consistent-Charge Density-Functional Tight-Binding (SCC-DFTB) Set of Parameters for Simulation of Bulk and Molecular Systems Involving Titanium J. Chem. Theory Comput. 2010, 6, 266-278
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 266-278
-
-
Dolgonos, G.1
Aradi, B.2
Moreira, N.H.3
Frauenheim, T.4
-
48
-
-
84858322279
-
SCC-DFTB Parametrization for Boron and Boranes
-
Grundkotter-Stock, B.; Bezugly, V.; Kunstmann, J.; Cuniberti, G.; Frauenheim, T.; Niehaus, T. A. SCC-DFTB Parametrization for Boron and Boranes J. Chem. Theory Comput. 2012, 8, 1153-1163
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 1153-1163
-
-
Grundkotter-Stock, B.1
Bezugly, V.2
Kunstmann, J.3
Cuniberti, G.4
Frauenheim, T.5
Niehaus, T.A.6
-
49
-
-
34547437377
-
SCC-DFTB: What is the proper degree of self-consistency
-
Elstner, M. SCC-DFTB: What is the proper degree of self-consistency J. Phys. Chem. A 2007, 111, 5614-5621
-
(2007)
J. Phys. Chem. A
, vol.111
, pp. 5614-5621
-
-
Elstner, M.1
-
50
-
-
35948946987
-
Extension of the self-consistent-charge density-functional tight-binding method: Third-order expansion of the density functional theory total energy and introduction of a modified effective coulomb interaction
-
Yang, Y.; Yu, H.; York, D.; Cui, Q.; Elstner, M. Extension of the self-consistent-charge density-functional tight-binding method: Third-order expansion of the density functional theory total energy and introduction of a modified effective coulomb interaction J. Phys. Chem. A 2007, 111, 10861-10873
-
(2007)
J. Phys. Chem. A
, vol.111
, pp. 10861-10873
-
-
Yang, Y.1
Yu, H.2
York, D.3
Cui, Q.4
Elstner, M.5
-
51
-
-
79954547473
-
DFTB3: Extension of the Self-Consistent-Charge Density-Functional Tight-Binding Method (SCC-DFTB)
-
Gaus, M.; Cui, Q.; Elstner, M. DFTB3: Extension of the Self-Consistent-Charge Density-Functional Tight-Binding Method (SCC-DFTB) J. Chem. Theory Comput. 2011, 7, 931-948
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 931-948
-
-
Gaus, M.1
Cui, Q.2
Elstner, M.3
-
52
-
-
84872145856
-
Parametrization and Benchmark of DFTB3 for Organic Molecules
-
Gaus, M.; Goez, A.; Elstner, M. Parametrization and Benchmark of DFTB3 for Organic Molecules J. Chem. Theory Comput. 2013, 9, 338-354
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 338-354
-
-
Gaus, M.1
Goez, A.2
Elstner, M.3
-
53
-
-
0038762283
-
Extension of MNDO to d orbitals: Parameters and results for the second-row elements and for the zinc group
-
Thiel, W.; Voityuk, A. A. Extension of MNDO to d orbitals: Parameters and results for the second-row elements and for the zinc group J. Phys. Chem. 1996, 100, 616-626
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 616-626
-
-
Thiel, W.1
Voityuk, A.A.2
-
54
-
-
0345042108
-
Chemical bonding in hypervalent molecules - The dominance of ionic bonding and negative hyperconjugation over d-orbital participation
-
Reed, A. E.; Schleyer, P. v. R. Chemical bonding in hypervalent molecules-the dominance of ionic bonding and negative hyperconjugation over d-orbital participation J. Am. Chem. Soc. 1990, 112, 1434-1445
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 1434-1445
-
-
Reed, A.E.1
Schleyer V. P, R.2
-
55
-
-
0032569184
-
Chemical bonding in hypervalent molecules revised. Application of the Atoms in Molecules Theory to Y-3 X and Y-3 XZ (Y = H or CH3; X = N, P or As; Z = O or S) compounds
-
Dobado, J. A.; Martinez-Garcia, H.; Molina, J. M.; Sundberg, M. R. Chemical bonding in hypervalent molecules revised. Application of the Atoms in Molecules Theory to Y-3 X and Y-3 XZ (Y = H or CH3; X = N, P or As; Z = O or S) compounds J. Am. Chem. Soc. 1998, 120, 8461-8471
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 8461-8471
-
-
Dobado, J.A.1
Martinez-Garcia, H.2
Molina, J.M.3
Sundberg, M.R.4
-
57
-
-
30444451496
-
Extension of the PDDG/PM3 Semiempirical Molecular Orbital Method to Sulfur, Silicon, and Phosphorus
-
Tubert-Brohman, I.; Guimarães, C. R. W.; Jorgensen, W. L. Extension of the PDDG/PM3 Semiempirical Molecular Orbital Method to Sulfur, Silicon, and Phosphorus J. Chem. Theory Comput. 2005, 1, 817-823
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 817-823
-
-
Tubert-Brohman, I.1
Guimarães, C.R.W.2
Jorgensen, W.L.3
-
58
-
-
35448937584
-
Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements
-
Stewart, J. J. P. Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements J. Mol. Model. 2007, 13, 1173-1213
-
(2007)
J. Mol. Model.
, vol.13
, pp. 1173-1213
-
-
Stewart, J.J.P.1
-
59
-
-
4243943295
-
Generalized Gradient Approximation Made Simple
-
Perdew, J. P.; Burke, K.; Ernzerhof, M. Generalized Gradient Approximation Made Simple Phys. Rev. Lett. 1996, 77, 3865-3868
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 3865-3868
-
-
Perdew, J.P.1
Burke, K.2
Ernzerhof, M.3
-
60
-
-
70350430420
-
Automatized parametrization of SCC-DFTB repulsive potentials: Application to hydrocarbons
-
Gaus, M.; Chou, C.-P.; Witek, H.; Elstner, M. Automatized parametrization of SCC-DFTB repulsive potentials: Application to hydrocarbons J. Phys. Chem. A 2009, 113, 11866-11881
-
(2009)
J. Phys. Chem. A
, vol.113
, pp. 11866-11881
-
-
Gaus, M.1
Chou, C.-P.2
Witek, H.3
Elstner, M.4
-
61
-
-
84890789306
-
Density Functional Tight Binding (DFTB): Application to organic an biological molecules
-
in press
-
Gaus, M.; Cui, Q.; Elstner, M. Density Functional Tight Binding (DFTB): Application to organic an biological molecules. WIREs Comput. Mol. Sci. 2013, in press
-
(2013)
WIREs Comput. Mol. Sci.
-
-
Gaus, M.1
Cui, Q.2
Elstner, M.3
-
62
-
-
84856048751
-
Possible improvements to the self-consistent-charges density-functional tight-binding method within the second order
-
Bodrog, Z.; Aradi, B. Possible improvements to the self-consistent- charges density-functional tight-binding method within the second order Phys. Status Solidi B 2012, 249, 259-269
-
(2012)
Phys. Status Solidi B
, vol.249
, pp. 259-269
-
-
Bodrog, Z.1
Aradi, B.2
-
63
-
-
80051662197
-
Automated repulsive parametrization for the DFTB method
-
Bodrog, Z.; Aradi, B.; Frauenheim, T. Automated repulsive parametrization for the DFTB method J. Chem. Theory Comput. 2011, 7, 2654-2664
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 2654-2664
-
-
Bodrog, Z.1
Aradi, B.2
Frauenheim, T.3
-
64
-
-
34547403718
-
Treatment of collinear and noncollinear electron spin within an approximate density functional based method
-
Köhler, C.; Frauenheim, T.; Hourahine, B.; Seifert, G.; Sternberg, M. Treatment of collinear and noncollinear electron spin within an approximate density functional based method J. Phys. Chem. A 2007, 111, 5622-5629
-
(2007)
J. Phys. Chem. A
, vol.111
, pp. 5622-5629
-
-
Köhler, C.1
Frauenheim, T.2
Hourahine, B.3
Seifert, G.4
Sternberg, M.5
-
65
-
-
9644277032
-
Density functional based calculations for Fe-n (n < = 32)
-
Kohler, C.; Seifert, G.; Frauenheim, T. Density functional based calculations for Fe-n (n < = 32) Chem. Phys. 2005, 309, 23-31
-
(2005)
Chem. Phys.
, vol.309
, pp. 23-31
-
-
Kohler, C.1
Seifert, G.2
Frauenheim, T.3
-
66
-
-
0012154673
-
Gaussian-3 (G3) theory for molecules containing first and second-row atoms
-
Curtiss, L. A.; Raghavachari, K.; Redfern, P. C.; Rassolov, V.; Pople, J. A. Gaussian-3 (G3) theory for molecules containing first and second-row atoms J. Chem. Phys. 1998, 109, 7764-7776
-
(1998)
J. Chem. Phys.
, vol.109
, pp. 7764-7776
-
-
Curtiss, L.A.1
Raghavachari, K.2
Redfern, P.C.3
Rassolov, V.4
Pople, J.A.5
-
67
-
-
0001213712
-
Assessment of Gaussian-3 and density functional theories for a larger experimental test set
-
Curtiss, L. A.; Raghavachari, K.; Redfern, P. C.; Pople, J. A. Assessment of Gaussian-3 and density functional theories for a larger experimental test set J. Chem. Phys. 2000, 112, 7374-7383
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 7374-7383
-
-
Curtiss, L.A.1
Raghavachari, K.2
Redfern, P.C.3
Pople, J.A.4
-
68
-
-
26044479374
-
Assessment of Gaussian-3 and density-functional theories on the G3/05 test set of experimental energies
-
Curtiss, L. A.; Redfern, P. C.; Raghavachari, K. Assessment of Gaussian-3 and density-functional theories on the G3/05 test set of experimental energies J. Chem. Phys. 2005, 123, 124107
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 124107
-
-
Curtiss, L.A.1
Redfern, P.C.2
Raghavachari, K.3
-
69
-
-
0013616075
-
Direct dynamics calculations with NDDO (neglect of diatomic differential overlap) molecular orbital theory with specific reaction parameters
-
Gonzalez-Lafont, A.; Truong, T. N.; Truhlar, D. G. Direct dynamics calculations with NDDO (neglect of diatomic differential overlap) molecular orbital theory with specific reaction parameters J. Phys. Chem. 1991, 95, 4618-4627
-
(1991)
J. Phys. Chem.
, vol.95
, pp. 4618-4627
-
-
Gonzalez-Lafont, A.1
Truong, T.N.2
Truhlar, D.G.3
-
70
-
-
84874846660
-
A Variational Linear-Scaling Framework to Build Practical, Efficient Next-Generation Orbital-Based Quantum Force Fields
-
Giese, T. J.; Chen, H. Y.; Dissanayake, T.; Giambasu, G. M.; Heldenbrand, H.; Huang, M.; Kuechler, E. R.; Lee, T. S.; Panteva, M. T.; Radak, B. K.; York, D. M. A Variational Linear-Scaling Framework to Build Practical, Efficient Next-Generation Orbital-Based Quantum Force Fields J. Chem. Theory Comput. 2013, 9, 1417-1427
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 1417-1427
-
-
Giese, T.J.1
Chen, H.Y.2
Dissanayake, T.3
Giambasu, G.M.4
Heldenbrand, H.5
Huang, M.6
Kuechler, E.R.7
Lee, T.S.8
Panteva, M.T.9
Radak, B.K.10
York, D.M.11
-
71
-
-
84898400240
-
-
DFTB - Density Functional based Tight Binding. (accessed on July 20th).
-
DFTB-Density Functional based Tight Binding. http://www.dftb.org (accessed on July 20th, 2012).
-
(2012)
-
-
-
72
-
-
84879999064
-
A Caveat on SCC-DFTB and Noncovalent Interactions Involving Sulfur Atoms
-
Petraglia, R.; Corminboeuf, C. A Caveat on SCC-DFTB and Noncovalent Interactions Involving Sulfur Atoms J. Chem. Theory Comput. 2013, 9, 3020-3025
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 3020-3025
-
-
Petraglia, R.1
Corminboeuf, C.2
-
73
-
-
0038626673
-
-
revision C.02; Gaussian, Inc. Wallingford, CT.
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A., Jr.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Gaussian 03, revision C.02; Gaussian, Inc.: Wallingford, CT, 2004.
-
(2004)
Gaussian 03
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery Jr., J.A.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
Millam, J.M.11
Iyengar, S.S.12
Tomasi, J.13
Barone, V.14
Mennucci, B.15
Cossi, M.16
Scalmani, G.17
Rega, N.18
Petersson, G.A.19
Nakatsuji, H.20
Hada, M.21
Ehara, M.22
Toyota, K.23
Fukuda, R.24
Hasegawa, J.25
Ishida, M.26
Nakajima, T.27
Honda, Y.28
Kitao, O.29
Nakai, H.30
Klene, M.31
Li, X.32
Knox, J.E.33
Hratchian, H.P.34
Cross, J.B.35
Adamo, C.36
Jaramillo, J.37
Gomperts, R.38
Stratmann, R.E.39
Yazyev, O.40
Austin, A.J.41
Cammi, R.42
Pomelli, C.43
Ochterski, J.W.44
Ayala, P.Y.45
Morokuma, K.46
Voth, G.A.47
Salvador, P.48
Dannenberg, J.J.49
Zakrzewski, V.G.50
Dapprich, S.51
Daniels, A.D.52
Strain, M.C.53
Farkas, O.54
Malick, D.K.55
Rabuck, A.D.56
Raghavachari, K.57
Foresman, J.B.58
Ortiz, J.V.59
Cui, Q.60
Baboul, A.G.61
Clifford, S.62
Cioslowski, J.63
Stefanov, B.B.64
Liu, G.65
Liashenko, A.66
Piskorz, P.67
Komaromi, I.68
Martin, R.L.69
Fox, D.J.70
Keith, T.71
Al-Laham, M.A.72
Peng, C.Y.73
Nanayakkara, A.74
Challacombe, M.75
Gill, P.M.W.76
Johnson, B.77
Chen, W.78
Wong, M.W.79
Gonzalez, C.80
Pople, J.A.81
more..
-
74
-
-
70450206724
-
-
Revision A.1; Gaussian, Inc. Wallingford, CT.
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. A.; Nakatsuji, H.; Caricato, M.; Li, X.; Hratchian, H. P.; Izmaylov, A. F.; Bloino, J.; Zheng, G.; Sonnenberg, J. L.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.; Montgomery, J. A., Jr.; Peralta, J. E.; Ogliaro, F.; Bearpark, M.; Heyd, J. J.; Brothers, E.; Kudin, K. N.; Staroverov, V. N.; Kobayashi, R.; Normand, J.; Raghavachari, K.; Rendell, A.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.; Rega, N.; Millam, N. J.; Klene, M.; Knox, J. E.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Martin, R. L.; Morokuma, K.; Zakrzewski, V. G.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Dapprich, S.; Daniels, A. D.; Farkas, Ö.; Foresman, J. B.; Ortiz, J. V.; Cioslowski, J.; Fox, D. J. Gaussian 09, Revision A.1; Gaussian, Inc.: Wallingford, CT, 2009.
-
(2009)
Gaussian 09
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Scalmani, G.7
Barone, V.8
Mennucci, B.9
Petersson, G.A.10
Nakatsuji, H.11
Caricato, M.12
Li, X.13
Hratchian, H.P.14
Izmaylov, A.F.15
Bloino, J.16
Zheng, G.17
Sonnenberg, J.L.18
Hada, M.19
Ehara, M.20
Toyota, K.21
Fukuda, R.22
Hasegawa, J.23
Ishida, M.24
Nakajima, T.25
Honda, Y.26
Kitao, O.27
Nakai, H.28
Vreven, T.29
Montgomery Jr., J.A.30
Peralta, J.E.31
Ogliaro, F.32
Bearpark, M.33
Heyd, J.J.34
Brothers, E.35
Kudin, K.N.36
Staroverov, V.N.37
Kobayashi, R.38
Normand, J.39
Raghavachari, K.40
Rendell, A.41
Burant, J.C.42
Iyengar, S.S.43
Tomasi, J.44
Cossi, M.45
Rega, N.46
Millam, N.J.47
Klene, M.48
Knox, J.E.49
Cross, J.B.50
Bakken, V.51
Adamo, C.52
Jaramillo, J.53
Gomperts, R.54
Stratmann, R.E.55
Yazyev, O.56
Austin, A.J.57
Cammi, R.58
Pomelli, C.59
Ochterski, J.W.60
Martin, R.L.61
Morokuma, K.62
Zakrzewski, V.G.63
Voth, G.A.64
Salvador, P.65
Dannenberg, J.J.66
Dapprich, S.67
Daniels, A.D.68
Farkas, Ö.69
Foresman, J.B.70
Ortiz, J.V.71
Cioslowski, J.72
Fox, D.J.73
more..
-
75
-
-
0000109748
-
Assessment of Gaussian-2 and density functional theories for the computation of enthalpies of formation
-
Curtiss, L. A.; Raghavachari, K.; Redfern, P. C.; Pople, J. A. Assessment of Gaussian-2 and density functional theories for the computation of enthalpies of formation J. Chem. Phys. 1997, 106, 1063-1079
-
(1997)
J. Chem. Phys.
, vol.106
, pp. 1063-1079
-
-
Curtiss, L.A.1
Raghavachari, K.2
Redfern, P.C.3
Pople, J.A.4
-
76
-
-
46049088279
-
Performance of B3LYP density functional methods for a large set of organic molecules
-
Tirado-Rives, J.; Jorgensen, W. L. Performance of B3LYP density functional methods for a large set of organic molecules J. Chem. Theory Comput. 2008, 4, 297-306
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 297-306
-
-
Tirado-Rives, J.1
Jorgensen, W.L.2
-
77
-
-
35448937584
-
Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements
-
Stewart, J. J. P. Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements J. Mol. Model. 2007, 13, 1173-1213
-
(2007)
J. Mol. Model.
, vol.13
, pp. 1173-1213
-
-
Stewart, J.J.P.1
-
78
-
-
22444446541
-
Modeling vibrational spectra using the self-consistent charge density-functional tight-binding method II. Infrared spectra
-
Witek, H. A.; Morokuma, K.; Stradomska, A. Modeling vibrational spectra using the self-consistent charge density-functional tight-binding method II. Infrared spectra J. Chem. Theory Comput. 2005, 4, 639-655
-
(2005)
J. Chem. Theory Comput.
, vol.4
, pp. 639-655
-
-
Witek, H.A.1
Morokuma, K.2
Stradomska, A.3
-
79
-
-
23944526281
-
Accurate vibrational frequencies using the self-consistent-charge density-functional tight-binding method
-
Małolepsza, E.; Witek, H. A.; Morokuma, K. Accurate vibrational frequencies using the self-consistent-charge density-functional tight-binding method Chem. Phys. Lett. 2005, 412, 237-243
-
(2005)
Chem. Phys. Lett.
, vol.412
, pp. 237-243
-
-
Małolepsza, E.1
Witek, H.A.2
Morokuma, K.3
-
80
-
-
84857383281
-
Unique Stoichiometric Representation for Computational Thermochemistry
-
Fishtik, I. Unique Stoichiometric Representation for Computational Thermochemistry J. Phys. Chem. A 2012, 116, 1854-1863
-
(2012)
J. Phys. Chem. A
, vol.116
, pp. 1854-1863
-
-
Fishtik, I.1
-
81
-
-
24044444942
-
Benchmark calculations of proton affinities and gas-phase basicities of molecules important in the study of biological phosphoryl transfer
-
Range, K.; Riccardi, D.; Cui, Q.; Elstner, M.; York, D. M. Benchmark calculations of proton affinities and gas-phase basicities of molecules important in the study of biological phosphoryl transfer Phys. Chem. Chem. Phys. 2005, 7, 3070-3079
-
(2005)
Phys. Chem. Chem. Phys.
, vol.7
, pp. 3070-3079
-
-
Range, K.1
Riccardi, D.2
Cui, Q.3
Elstner, M.4
York, D.M.5
-
82
-
-
74649083341
-
Proton transfer function of carbonic anhydrase: Insights from QM/MM simulations
-
Riccardi, D.; Yang, S.; Cui, Q. Proton transfer function of carbonic anhydrase: Insights from QM/MM simulations Biochim. Biophys. Acta 2010, 1804, 342-351
-
(2010)
Biochim. Biophys. Acta
, vol.1804
, pp. 342-351
-
-
Riccardi, D.1
Yang, S.2
Cui, Q.3
-
83
-
-
80053054462
-
a and infrared spectra
-
a and infrared spectra J. Am. Chem. Soc. 2011, 133, 14981-14997
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 14981-14997
-
-
Goyal, P.1
Ghosh, N.2
Phatak, P.3
Clemens, M.4
Gaus, M.5
Elstner, M.6
Cui, Q.7
-
84
-
-
79952943559
-
Effect of the damping function in dispersion corrected density functional theory
-
Grimme, S.; Ehrlich, S.; Goerigk, L. Effect of the damping function in dispersion corrected density functional theory J. Comput. Chem. 2011, 32, 1456-1465
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 1456-1465
-
-
Grimme, S.1
Ehrlich, S.2
Goerigk, L.3
-
85
-
-
0035932162
-
Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density functional-theory based treatment
-
Elstner, M.; Hobza, P.; Frauenheim, T.; Suhai, S.; Kaxiras, E. Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density functional-theory based treatment J. Chem. Phys. 2001, 114, 5149-5155
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 5149-5155
-
-
Elstner, M.1
Hobza, P.2
Frauenheim, T.3
Suhai, S.4
Kaxiras, E.5
-
86
-
-
70449348216
-
The hydrolysis activity of adenosine triphosphate in myosin: A theoretical analysis of anomeric effects and the nature of the transition state
-
Yang, Y.; Cui, Q. The hydrolysis activity of adenosine triphosphate in myosin: a theoretical analysis of anomeric effects and the nature of the transition state J. Phys. Chem. A 2009, 113, 12439-12446
-
(2009)
J. Phys. Chem. A
, vol.113
, pp. 12439-12446
-
-
Yang, Y.1
Cui, Q.2
-
87
-
-
65249093234
-
Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol
-
Yang, Y.; Cui, Q. Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol J. Phys. Chem. B 2009, 113, 4930-4939
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 4930-4939
-
-
Yang, Y.1
Cui, Q.2
-
88
-
-
84898428197
-
-
Ph.D. thesis, Karlsruhe Institute of Technology, Karlsruhe, Germany, 2011. Publicly available at (accessed May 31).
-
Gaus, M. Extension and Parametrization of an Approximate Density Functional Method for Organic and Biomolecules. Ph.D. thesis, Karlsruhe Institute of Technology, Karlsruhe, Germany, 2011. Publicly available at www.bibliothek.kit.edu (accessed May 31, 2012).
-
(2012)
Extension and Parametrization of An Approximate Density Functional Method for Organic and Biomolecules
-
-
Gaus, M.1
-
89
-
-
0003692531
-
-
Berne, B. Cicotti, G. Coke, D. World Scientific: Singapore
-
Jónsson, H.; Mills, G.; Jacobsen, K. W. In Classical and Quantum Dynamics in Condensed Phase Simulations; Berne, B.; Cicotti, G.; Coke, D., Eds.; World Scientific: Singapore, 1998; p 385.
-
(1998)
Classical and Quantum Dynamics in Condensed Phase Simulations
, pp. 385
-
-
Jónsson, H.1
Mills, G.2
Jacobsen, K.W.3
-
90
-
-
33845926809
-
Improving the QM/MM description of chemical processes: A dual level strategy to explore the potential energy surface in very large systems
-
Marti, S.; Moliner, V.; Tuñón, I. Improving the QM/MM description of chemical processes: A dual level strategy to explore the potential energy surface in very large systems J. Chem. Theory Comput. 2005, 1, 1008-1016
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 1008-1016
-
-
Marti, S.1
Moliner, V.2
Tuñón, I.3
-
91
-
-
33750478314
-
High-accuracy computation of reaction barriers in enzymes
-
Claeyssens, F.; Harvey, J. N.; Manby, F. R.; Mata, R. A.; Mulholland, A. J.; Ranaghan, K. E.; Schutz, M.; Thiel, S.; Thiel, W.; Werner, H. J. High-accuracy computation of reaction barriers in enzymes Angew. Chem., Int. Ed. 2006, 45, 6856-6859
-
(2006)
Angew. Chem., Int. Ed.
, vol.45
, pp. 6856-6859
-
-
Claeyssens, F.1
Harvey, J.N.2
Manby, F.R.3
Mata, R.A.4
Mulholland, A.J.5
Ranaghan, K.E.6
Schutz, M.7
Thiel, S.8
Thiel, W.9
Werner, H.J.10
-
92
-
-
77955765435
-
Free energy calculations using dual-level Born-Oppenheimer molecular dynamics
-
Retegan, M.; Martins-Costa, M.; Ruiz-Lopez, M. F. Free energy calculations using dual-level Born-Oppenheimer molecular dynamics J. Chem. Phys. 2010, 133, 064103
-
(2010)
J. Chem. Phys.
, vol.133
, pp. 064103
-
-
Retegan, M.1
Martins-Costa, M.2
Ruiz-Lopez, M.F.3
-
93
-
-
84903362278
-
Quantum mechanics/molecular mechanics dual Hamiltonian free energy perturbation
-
Polyak, I.; Benighaus, T.; Boulanger, E.; Thiel, W. Quantum mechanics/molecular mechanics dual Hamiltonian free energy perturbation J. Chem. Phys. 2013, 139, 064105
-
(2013)
J. Chem. Phys.
, vol.139
, pp. 064105
-
-
Polyak, I.1
Benighaus, T.2
Boulanger, E.3
Thiel, W.4
-
94
-
-
84884195204
-
DFTB Parameters for the Periodic Table: Part 1, Electronic Structure
-
Wahiduzzaman, M.; Oliveira, A. F.; Philipsen, P.; Zhechkov, L.; van Lenthe, E.; Witek, H. A.; Heine, T. DFTB Parameters for the Periodic Table: Part 1, Electronic Structure J. Chem. Theory Comput. 2013, 9, 4006-4017
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 4006-4017
-
-
Wahiduzzaman, M.1
Oliveira, A.F.2
Philipsen, P.3
Zhechkov, L.4
Van Lenthe, E.5
Witek, H.A.6
Heine, T.7
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