-
1
-
-
73149112435
-
Targeted next-generation sequencing appoints c16orf57 as clericuzio-type poikiloderma with neutropenia gene
-
Volpi L, Roversi G, Colombo EA, et al. Targeted next-generation sequencing appoints c16orf57 as clericuzio-type poikiloderma with neutropenia gene. Am J Hum Genet. 2010;86(1):72-76.
-
(2010)
Am J Hum Genet.
, vol.86
, Issue.1
, pp. 72-76
-
-
Volpi, L.1
Roversi, G.2
Colombo, E.A.3
-
2
-
-
77958461251
-
Mutations in C16orf57 and normal-length telomeres unify a subset of patients with dyskeratosis congenita, poikiloderma with neutropenia and Rothmund-Thomson syndrome
-
Walne AJ, Vulliamy T, Beswick R, Kirwan M, Dokal I. Mutations in C16orf57 and normal-length telomeres unify a subset of patients with dyskeratosis congenita, poikiloderma with neutropenia and Rothmund-Thomson syndrome. Hum Mol Genet. 2010;19(22):4453-4461.
-
(2010)
Hum Mol Genet.
, vol.19
, Issue.22
, pp. 4453-4461
-
-
Walne, A.J.1
Vulliamy, T.2
Beswick, R.3
Kirwan, M.4
Dokal, I.5
-
3
-
-
84856047762
-
Novel C16orf57 mutations in patients with poikiloderma with neutropenia: Bioinformatic analysis of the protein and predicted effects of all reported mutations
-
Colombo EA, Bazan JF, Negri G, et al. Novel C16orf57 mutations in patients with poikiloderma with neutropenia: bioinformatic analysis of the protein and predicted effects of all reported mutations. Orphanet J Rare Dis. 2012;7:7.
-
(2012)
Orphanet J Rare Dis.
, vol.7
, pp. 7
-
-
Colombo, E.A.1
Bazan, J.F.2
Negri, G.3
-
4
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl MC, Will CL, Luhrmann R. The spliceosome: design principles of a dynamic RNP machine. Cell. 2009;136(4):701-718.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
5
-
-
0036948420
-
Allosteric cascade of spliceosome activation
-
DOI 10.1146/annurev.genet.36.043002.091635
-
Brow DA. Allosteric cascade of spliceosome activation. Annu Rev Genet. 2002;36:333-360. (Pubitemid 36109193)
-
(2002)
Annual Review of Genetics
, vol.36
, pp. 333-360
-
-
Brow, D.A.1
-
6
-
-
0028359622
-
Purification of human U6 small nuclear RNA capping enzyme. Evidence for a common capping enzyme for gammamonomethyl-capped small RNAs
-
Shimba S, Reddy R. Purification of human U6 small nuclear RNA capping enzyme. Evidence for a common capping enzyme for gammamonomethyl-capped small RNAs. J Biol Chem. 1994;269(17):12419-12423.
-
(1994)
J Biol Chem
, vol.269
, Issue.17
, pp. 12419-12423
-
-
Shimba, S.1
Reddy, R.2
-
8
-
-
0022423257
-
Association of the lupus antigen La with a subset of U6 snRNA molecules
-
Rinke J, Steitz JA. Association of the lupus antigen La with a subset of U6 snRNA molecules. Nucleic Acids Res. 1985;13(7):2617-2629.
-
(1985)
Nucleic Acids Res
, vol.13
, Issue.7
, pp. 2617-2629
-
-
Rinke, J.1
Steitz, J.A.2
-
9
-
-
0022969957
-
U6 small nuclear RNA is transcribed by RNA polymerase III
-
DOI 10.1073/pnas.83.22.8575
-
Kunkel GR, Maser RL, Calvet JP, Pederson T. U6 small nuclear RNA is transcribed by RNA polymerase III. Proc Natl Acad Sci U S A. 1986; 83(22):8575-8579. (Pubitemid 17194914)
-
(1986)
Proceedings of the National Academy of Sciences of the United States of America
, vol.83
, Issue.22
, pp. 8575-8579
-
-
Kunkel, G.R.1
Maser, R.L.2
Calvet, J.P.3
Pederson, T.4
-
10
-
-
0021305722
-
Purified lupus antigen La recognizes an oligouridylate stretch common to the 3′ termini of RNA polymerase III transcripts
-
Stefano JE. Purified lupus antigen La recognizes an oligouridylate stretch common to the 3′ termini of RNA polymerase III transcripts. Cell. 1984; 36(1):145-154.
-
(1984)
Cell
, vol.36
, Issue.1
, pp. 145-154
-
-
Stefano, J.E.1
-
11
-
-
0026565203
-
Cyclic 2′,3′-phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNA's
-
Lund E, Dahlberg JE. Cyclic 2′,3′-phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNA's. Science. 1992;255(5042):327-330.
-
(1992)
Science
, vol.255
, Issue.5042
, pp. 327-330
-
-
Lund, E.1
Dahlberg, J.E.2
-
12
-
-
0028997105
-
Sm and Sm-like proteins belong to a large family: Identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs
-
Seraphin B. Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs. EMBO J. 1995;14(9):2089-2098.
-
(1995)
EMBO J
, vol.14
, Issue.9
, pp. 2089-2098
-
-
Seraphin, B.1
-
13
-
-
47949110828
-
3′-cyclic phosphorylation of U6 snRNA leads to recruitment of recycling factor p110 through LSm proteins
-
Licht K, Medenbach J, Luhrmann R, Kambach C, Bindereif A. 3′-cyclic phosphorylation of U6 snRNA leads to recruitment of recycling factor p110 through LSm proteins. RNA. 2008;14(8): 1532-1538.
-
(2008)
RNA
, vol.14
, Issue.8
, pp. 1532-1538
-
-
Licht, K.1
Medenbach, J.2
Luhrmann, R.3
Kambach, C.4
Bindereif, A.5
-
14
-
-
0033569743
-
A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
-
DOI 10.1093/emboj/18.20.5789
-
Achsel T, Brahms H, Kastner B, Bachi A, Wilm M, Luhrmann R. A doughnut-shaped heteromer of human Sm-like proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro. EMBO J. 1999;18(20):5789-5802. (Pubitemid 29486396)
-
(1999)
EMBO Journal
, vol.18
, Issue.20
, pp. 5789-5802
-
-
Achsel, T.1
Brahms, H.2
Kastner, B.3
Bachi, A.4
Wilm, M.5
Luhrmann, R.6
-
15
-
-
0033517098
-
Characterization of Sm-like proteins in yeast and their association with U6 snRNA
-
DOI 10.1093/emboj/18.15.4321
-
Mayes AE, Verdone L, Legrain P, Beggs JD. Characterization of Sm-like proteins in yeast and their association with U6 snRNA. EMBO J. 1999; 18(15):4321-4331. (Pubitemid 29364134)
-
(1999)
EMBO Journal
, vol.18
, Issue.15
, pp. 4321-4331
-
-
Mayes, A.E.1
Verdone, L.2
Legrain, P.3
Beggs, J.D.4
-
16
-
-
0032755703
-
Characterization of U6 snRNA-protein interactions
-
DOI 10.1017/S1355838299991355
-
Vidal VP, Verdone L, Mayes AE, Beggs JD. Characterization of U6 snRNA-protein interactions. RNA. 1999;5(11):1470-1481. (Pubitemid 29530491)
-
(1999)
RNA
, vol.5
, Issue.11
, pp. 1470-1481
-
-
Vidal, V.P.I.1
Verdone, L.2
Mayes, A.E.3
Beggs, J.D.4
-
17
-
-
0033564627
-
Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
-
DOI 10.1093/emboj/18.12.3451
-
Salgado-Garrido J, Bragado-Nilsson E, Kandels-Lewis S, Seraphin B. Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J. 1999;18(12):3451-3462. (Pubitemid 29276590)
-
(1999)
EMBO Journal
, vol.18
, Issue.12
, pp. 3451-3462
-
-
Salgado-Garrido, J.1
Bragado-Nilsson, E.2
Kandels-Lewis, S.3
Seraphin, B.4
-
18
-
-
33847360037
-
The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA
-
DOI 10.1093/nar/gkl1130
-
Spiller MP, Boon KL, Reijns MA, Beggs JD. The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA. Nucleic Acids Res. 2007;35(3):923-929. (Pubitemid 46344717)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.3
, pp. 923-929
-
-
Spiller, M.P.1
Boon, K.-L.2
Reijns, M.A.M.3
Beggs, J.D.4
-
19
-
-
0027400852
-
Mammalian U6 small nuclear RNA undergoes 3' end modifications within the spliceosome
-
Tazi J, Forne T, Jeanteur P, Cathala G, Brunel C. Mammalian U6 small nuclear RNA undergoes 3′ end modifications within the spliceosome. Mol Cell Biol. 1993;13(3):1641-1650. (Pubitemid 23068102)
-
(1993)
Molecular and Cellular Biology
, vol.13
, Issue.3
, pp. 1641-1650
-
-
Tazi, J.1
Forne, T.2
Jeanteur, P.3
Cathala, G.4
Brunel, C.5
-
20
-
-
0030771488
-
Formation of 2',3'-cyclic phosphates at the 3' end of human U6 small nuclear RNA in vitro: Identification of 2',3'-cyclic phosphates at the 3' ends of human signal recognition particle and mitochondrial RNA processing RNAs
-
DOI 10.1074/jbc.272.35.21989
-
Gu J, Shumyatsky G, Makan N, Reddy R. Formation of 2′,3′- cyclic phosphates at the 3′ end of human U6 small nuclear RNA in vitro. Identification of 2′,3′-cyclic phosphates at the 3′ ends of human signal recognition particle and mitochondrial RNA processing RNAs. J Biol Chem. 1997; 272(35):21989-21993. (Pubitemid 27382821)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.35
, pp. 21989-21993
-
-
Gu, J.1
Shumyatsky, G.2
Makan, N.3
Reddy, R.4
-
21
-
-
0037335898
-
Biochemical characterization of a U6 small nuclear RNA-specific terminal uridylyltransferase
-
DOI 10.1046/j.1432-1033.2003.03466.x
-
Trippe R, Richly H, Benecke BJ. Biochemical characterization of a U6 small nuclear RNAspecific terminal uridylyltransferase. Eur J Biochem. 2003;270(5):971-980. (Pubitemid 36315340)
-
(2003)
European Journal of Biochemistry
, vol.270
, Issue.5
, pp. 971-980
-
-
Trippe, R.1
Richly, H.2
Benecke, B.-J.3
-
22
-
-
33746489955
-
Identification, cloning, and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase
-
DOI 10.1261/rna.87706
-
Trippe R, Guschina E, Hossbach M, Urlaub H, Luhrmann R, Benecke BJ. Identification, cloning, and functional analysis of the human U6 snRNAspecific terminal uridylyl transferase. RNA. 2006; 12(8):1494-1504. (Pubitemid 44141529)
-
(2006)
RNA
, vol.12
, Issue.8
, pp. 1494-1504
-
-
Trippe, R.1
Guschina, E.2
Hossbach, M.3
Urlaub, H.4
Luhrmann, R.5
Benecke, B.-J.6
-
23
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol. 1995;247(4):536-540.
-
(1995)
J Mol Biol
, vol.247
, Issue.4
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
24
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm L, Rosenstrom P. Dali server: conservation mapping in 3D. Nucleic Acids Res. 2010;38(Web server issue):W545-W549.
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.WEB SERVER ISSUE
-
-
Holm, L.1
Rosenstrom, P.2
-
26
-
-
60849084559
-
Characterization of a heat-stable enzyme possessing GTPdependent RNA ligase activity from a hyperthermophilic archaeon pyrococcus furiosus
-
Kanai A, Sato A, Fukuda Y, et al. Characterization of a heat-stable enzyme possessing GTPdependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus. RNA. 2009;15(3):420-431.
-
(2009)
RNA
, vol.15
, Issue.3
, pp. 420-431
-
-
Kanai, A.1
Sato, A.2
Fukuda, Y.3
-
27
-
-
0038206596
-
Crystal structure of the 2′-5′ RNA ligase from Thermus thermophilus HB8
-
DOI 10.1016/S0022-2836(03)00448-0
-
Kato M, Shirouzu M, Terada T, et al. Crystal structure of the 2′-5′ RNA ligase from Thermus thermophilus HB8. J Mol Biol. 2003;329(5):903-911. (Pubitemid 36683148)
-
(2003)
Journal of Molecular Biology
, vol.329
, Issue.5
, pp. 903-911
-
-
Kato, M.1
Shirouzu, M.2
Terada, T.3
Yamaguchi, H.4
Murayama, K.5
Sakai, H.6
Kuramitsu, S.7
Yokoyama, S.8
-
28
-
-
37549046845
-
AKAP18 contains a phosphoesterase domain that binds AMP
-
Gold MG, Smith FD, Scott JD, Barford D. AKAP18 contains a phosphoesterase domain that binds AMP. J Mol Biol. 2008;375(5):1329-1343.
-
(2008)
J Mol Biol
, vol.375
, Issue.5
, pp. 1329-1343
-
-
Gold, M.G.1
Smith, F.D.2
Scott, J.D.3
Barford, D.4
-
29
-
-
0034669054
-
Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction
-
Hofmann A, Zdanov A, Genschik P, Ruvinov S, Filipowicz W, Wlodawer A. Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction. EMBO J. 2000;19(22):6207- 6217.
-
(2000)
EMBO J
, vol.19
, Issue.22
, pp. 6207-6217
-
-
Hofmann, A.1
Zdanov, A.2
Genschik, P.3
Ruvinov, S.4
Filipowicz, W.5
Wlodawer, A.6
-
30
-
-
84870546369
-
How an exonuclease decides where to stop in trimming of nucleic acids: Crystal structures of RNase T-product complexes
-
Hsiao YY, Duh Y, Chen YP, Wang YT, Yuan HS. How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes. Nucleic Acids Res. 2012;40(16):8144-8154.
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.16
, pp. 8144-8154
-
-
Hsiao, Y.Y.1
Duh, Y.2
Chen, Y.P.3
Wang, Y.T.4
Yuan, H.S.5
-
31
-
-
77149132138
-
Capture and sequence analysis of RNAs with terminal 2′,3′- cyclic phosphates
-
Schutz K, Hesselberth JR, Fields S. Capture and sequence analysis of RNAs with terminal 2′,3′- cyclic phosphates. RNA. 2010;16(3):621-631.
-
(2010)
RNA
, vol.16
, Issue.3
, pp. 621-631
-
-
Schutz, K.1
Hesselberth, J.R.2
Fields, S.3
-
32
-
-
0032549569
-
Adenylation of small RNAs in human cells. Development of a cell-free system for accurate adenylation on the 3'-end of human signal recognition particle RNA
-
DOI 10.1074/jbc.273.12.6853
-
Sinha KM, Gu J, Chen Y, Reddy R. Adenylation of small RNAs in human cells. Development of a cell-free system for accurate adenylation on the 3′-end of human signal recognition particle RNA. J Biol Chem. 1998;273(12):6853-6859. (Pubitemid 28160348)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.12
, pp. 6853-6859
-
-
Sinha, K.M.1
Gu, J.2
Chen, Y.3
Reddy, R.4
-
33
-
-
0033826978
-
Effect of 3′ terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes
-
Chen Y, Sinha K, Perumal K, Reddy R. Effect of 3′ terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes. RNA. 2000;6(9):1277-1288.
-
(2000)
RNA
, vol.6
, Issue.9
, pp. 1277-1288
-
-
Chen, Y.1
Sinha, K.2
Perumal, K.3
Reddy, R.4
-
34
-
-
84865855022
-
C16orf57, a gene mutated in poikiloderma with neutropenia, encodes a putative phosphodiesterase responsible for the U6 snRNA3′ end modification
-
Mroczek S, Krwawicz J, Kutner J, et al. C16orf57, a gene mutated in poikiloderma with neutropenia, encodes a putative phosphodiesterase responsible for the U6 snRNA3′ end modification. Genes Dev. 2012;26(17):1911-1925.
-
(2012)
Genes Dev.
, vol.26
, Issue.17
, pp. 1911-1925
-
-
Mroczek, S.1
Krwawicz, J.2
Kutner, J.3
-
35
-
-
84868141731
-
Mpn1 mutated in poikiloderma with neutropenia protein 1 is a conserved 3′-to-5′ RNA exonuclease processing U6 small nuclear RNA
-
Shchepachev V, Wischnewski H, Missiaglia E, Soneson C, Azzalin CM. Mpn1, Mutated in Poikiloderma with Neutropenia Protein 1, Is a Conserved 3′-to-5′ RNA Exonuclease Processing U6 Small Nuclear RNA. Cell Rep. 2012;2(4):855-865.
-
(2012)
Cell Rep.
, vol.2
, Issue.4
, pp. 855-865
-
-
Shchepachev, V.1
Wischnewski, H.2
Missiaglia, E.3
Soneson, C.4
Azzalin, C.M.5
-
37
-
-
60149090021
-
The many pathways of RNA degradation
-
Houseley J, Tollervey D. The many pathways of RNA degradation. Cell. 2009;136(4):763-776.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 763-776
-
-
Houseley, J.1
Tollervey, D.2
-
38
-
-
84869082850
-
Transcriptome-wide analysis of exosome targets
-
Schneider C, Kudla G, Wlotzka W, Tuck A, Tollervey D. Transcriptome-wide analysis of exosome targets. Mol Cell. 2012;48(3):422-433.
-
(2012)
Mol Cell.
, vol.48
, Issue.3
, pp. 422-433
-
-
Schneider, C.1
Kudla, G.2
Wlotzka, W.3
Tuck, A.4
Tollervey, D.5
-
39
-
-
0030781988
-
Differential alterations in metabolic pattern of the six major UsnRNAs during development
-
Ray R, Ray K, Panda CK. Differential alterations in metabolic pattern of the six major UsnRNAs during development. Mol Cell Biochem. 1997; 177(1-2):79-88. (Pubitemid 27522361)
-
(1997)
Molecular and Cellular Biochemistry
, vol.177
, Issue.1-2
, pp. 79-88
-
-
Ray, R.1
Ray, K.2
Panda, C.K.3
-
40
-
-
80053900941
-
Frequent pathway mutations of splicing machinery in myelodysplasia
-
Yoshida K, Sanada M, Shiraishi Y, et al. Frequent pathway mutations of splicing machinery in myelodysplasia. Nature. 2011;478(7367):64-69.
-
(2011)
Nature
, vol.478
, Issue.7367
, pp. 64-69
-
-
Yoshida, K.1
Sanada, M.2
Shiraishi, Y.3
-
41
-
-
80054010617
-
Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts
-
Papaemmanuil E, Cazzola M, Boultwood J, et al. Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts. N Engl J Med. 2011;365(15): 1384-1395.
-
(2011)
N Engl J Med.
, vol.365
, Issue.15
, pp. 1384-1395
-
-
Papaemmanuil, E.1
Cazzola, M.2
Boultwood, J.3
-
42
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc Natl Acad Sci U S A. 2001;98(18):10037-10041. (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
43
-
-
79953765276
-
Presenting your structures: The CCP4mg moleculargraphics software
-
McNicholas S, Potterton E, Wilson KS, Noble ME. Presenting your structures: the CCP4mg moleculargraphics software. Acta Crystallogr D Biol Crystallogr. 2011;67(Pt 4):386-394.
-
(2011)
Acta Crystallogr D Biol Crystallogr.
, vol.67
, Issue.PART 4
, pp. 386-394
-
-
McNicholas, S.1
Potterton, E.2
Wilson, K.S.3
Noble, M.E.4
-
44
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogenbonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogenbonded and geometrical features. Biopolymers. 1983;22(12):2577-2637.
-
(1983)
Biopolymers
, vol.22
, Issue.12
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
45
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J. T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol. 2000;302(1):205-217.
-
(2000)
J Mol Biol
, vol.302
, Issue.1
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
46
-
-
65449188232
-
Jalview Version 2: A multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview Version 2: a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009;25(9):1189-1191.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
|