The complete mitogenome of a 500-year-old Inca child mummy

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Gómez Carballa, Alberto ^a   Catelli, Laura ^c   Pardo Seco, Jacobo ^a   Martinón Torres, Federico ^a,b   Roewer, Lutz ^d   Vullo, Carlos ^c   Salas, Antonio ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b Instituto de Salud Carlos III   (Spain)

^c Hospital Clínico Universitario de Santiago ^*  (Argentina)

^d CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMERICAN INDIAN; AYMARA (PEOPLE); BOLIVIA; CASE REPORT; CHILD; CLADISTICS; DATA BASE; HAPLOGROUP; HAPLOTYPE; HUMAN; PALEOPATHOLOGY; PERU; ARGENTINA; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; MITOCHONDRIAL GENOME; PHYLOGENY; RELIGION;

MITOCHONDRIAL DNA;

ARGENTINA; CHILD; DNA, MITOCHONDRIAL; GENOME, MITOCHONDRIAL; HAPLOTYPES; HUMANS; INDIANS, SOUTH AMERICAN; MUMMIES; PHYLOGENY; RELIGION; SEQUENCE ANALYSIS, DNA;

EID: 84946944974     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep16462     Document Type: Article

References (52)

1. Schobinger, J., Los santuarios de altura incaicos y el Aconcagua: aspectos generales e interpretativos. (Relaciones de la Sociedad Argentina de Antropología XXIV, Buenos Aires, Argentina, 1999).
2. Ceruti, C. Human bodies as objects of dedication at Inca mountain shrines (north-western Argentina). World Archaeol 36(1), 103 (2004).
3. Andrushkom V. A. et al. Investigating a child sacrifice event from the Inca heartland. J Archaeol Sci 38(2), 323 (2011).
4. Wilson, A. S. et al. Archaeological, radiological, and biological evidence offer insight into Inca child sacrifice. Proc Natl Acad Sci USA 110(33), 13322 (2013).
5. Lazaridis, I. et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513(7518), 409 (2014).
6. Schroeder, H. et al. Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean. Proc Natl Acad Sci USA 112(12), 3669 (2015).
7. Olalde, I. et al. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature 507(7491), 225 (2014).
8. Green, R. E. et al. A draft sequence of the Neandertal genome. Science 328(5979), 710 (2010).
9. Monsalve, M. V. et al. Brief communication: molecular analysis of the Kwaday Dan Ts'finchi ancient remains found in a glacier in Canada. Am J Phys Anthropol 119(3), 288 (2002).
10. Ermini, L. et al. Complete mitochondrial genome sequence of the Tyrolean Iceman. Curr Biol 18(21), 1687 (2008).
11. Kuch, M. et al. A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA. Am J Phys Anthropol 132(4), 594 (2007).
12. Hawass, Z. et al. Revisiting the harem conspiracy and death of Ramesses III: anthropological, forensic, radiological, and genetic study. BMJ 345, e8268 (2012).
13. Khairat, R. et al. First insights into the metagenome of Egyptian mummies using next-generation sequencing. Journal of applied genetics 54(3), 309 (2013).
14. Kemp, B. M. et al. Genetic analysis of early holocene skeletal remains from Alaska and its implications for the settlement of the Americas. Am J Phys Anthropol 132(4), 605 (2007).
15. Kemp, B. M., Tung, T. A. & Summar, M. L. Genetic continuity after the collapse of the Wari empire: mitochondrial DNA profiles from Wari and post-Wari populations in the ancient Andes. Am J Phys Anthropol 140(1), 80 (2009).
16. Wilson, A. S. et al. Stable isotope and DNA evidence for ritual sequences in Inca child sacrifice. Proc Natl Acad Sci USA 104(42), 16456 (2007).
17. Andrews, R. M. et al. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat. Genet. 23(2), 147 (1999).
18. Bodner, M. et al. Rapid coastal spread of First Americans: Novel insights from South America's Southern Cone mitochondrial genomes. Genome Res 22(5), 811 (2012).
19. Achilli, A. et al. The phylogeny of the four pan-American MtDNA haplogroups: implications for evolutionary and disease studies. PLoS One 3(3), e1764 (2008).
20. Tamm, E. et al. Beringian standstill and spread of Native American founders. PLoS ONE 2(9), e829 (2007).
21. Perego, U. A. et al. The initial peopling of the Americas: a growing number of founding mitochondrial genomes from Beringia. Genome Res 20(9), 1174 (2010).
22. Reich, D. et al. Reconstructing Native American population history. Nature 488(7411), 370 (2012).
23. Perego, U. A. et al. Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups. Curr. Biol. 19(1), 1 (2009).
24. Söchtig, J. et al. Genomic insights on the ethno-history of the Maya and the 'Ladinos' from Guatemala. BMC Genomics 16(1), 131 (2015).
25. de Saint Pierre, M. et al. Arrival of paleo-indians to the southern cone of South america: new clues from mitogenomes. PLoS One 7(12), e51311 (2012).
26. Parson, W. et al. DNA Commission of the International Society for Forensic Genetics: Revised and extended guidelines for mitochondrial DNA typing. Forensic Sci. Int. Genet. 13C, 134 (2014).
27. Kivisild, T. et al. The role of selection in the evolution of human mitochondrial genomes. Genetics 172(1), 373 (2006).
28. Brisighelli, F. et al. The Etruscan timeline: A recent Anatolian connection. Eur J. Hum. Genet. 17(5), 693 (2009).
29. Cerezo, M. et al. High mitochondrial DNA stability in B-cell chronic lymphocytic leukemia. PLoS One 4(11), e7902 (2009).
30. Cerezo, M. et al. Reconstructing ancient mitochondrial DNA links between Africa and Europe. Genome Res 22(5), 821 (2012).
31. Salas, A. et al. A practical guide to mitochondrial DNA error prevention in clinical, forensic, and population genetics. Biochem. Biophys. Res. Commun. 335(3), 891 (2005).
32. Bandelt, H. -J. & Salas, A. Contamination and sample mix-up can best explain some patterns of mtDNA instabilities in buccal cells and oral squamous cell carcinoma. BMC Cancer 9(1), 113 (2009).
33. Melchior, L. et al. Rare mtDNA haplogroups and genetic differences in rich and poor Danish Iron-Age villages. Am J Phys Anthropol 135(2), 206 (2008).
34. Pääbo, S. Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification. Proc Natl Acad Sci USA 86(6), 1939 (1989).
35. Salas, A., Bandelt, H. -J., Macaulay, V. & Richards, M. B. Phylogeographic investigations: The role of trees in forensic genetics. Forensic Sci. Int. 168(1), 1 (2007).
36. Bandelt, H. J., Salas, A. & Lutz-Bonengel, S. Artificial recombination in forensic mtDNA population databases. Int. J. Legal Med. 118(5), 267 (2004).
37. Kong, Q. -P. et al. Distilling artificial recombinants from large sets of complete mtDNA genomes. PLoS One 3(8), e3016 (2008).
38. Bandelt, H. -J., Salas, A. & Bravi, C.M. Problems in FBI mtDNA database. Science 305(5689), 1402 (2004).
39. Bandelt, H. -J., Salas, A., Taylor, R. W. & Yao, Y. -G. The exaggerated status of "novel" and "pathogenic" mtDNA sequence variants due to inadequate database searches. Hum Mutat 30(2), 191 (2009).
40. Yang, Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Computer applications in the biosciences : CABIOS 13(5), 555 (1997).
41. Saillard, J. et al. mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. Am. J. Hum. Genet. 67(3), 718 (2000).
42. Slatkin, M. Gene genealogies within mutant allelic classes. Genetics 143(1), 579 (1996).
43. Soares, P. et al. Correcting for purifying selection: an improved human mitochondrial molecular clock. Am. J. Hum. Genet. 84(6), 740 (2009).
44. Drummond, A. J., Rambaut, A., Shapiro, B. & Pybus, O. G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22(5), 1185 (2005).
45. Drummond, A. J. & Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7, 214 (2007).
46. Drummond, A. J., Ho, S. Y., Phillips, M. J. & Rambaut, A. Relaxed phylogenetics and dating with confidence. PLoS Biol 4(5), e88 (2006).
47. Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29(8), 1969 (2012).
48. Fagundes, N. J. et al. Mitochondrial population genomics supports a single pre-Clovis origin with a coastal route for the peopling of the Americas. Am. J. Hum. Genet. 82(3), 583 (2008).
49. Schobinger, J. et al. El santuario incaico del Cerro Aconcagua. (Ediunc, Universidad Nacional de Cuyo, Mendoza, Argentina, 2001).
50. Barbieri, C. et al. Between Andes and Amazon: the genetic profile of the Arawak-speaking Yanesha. Am J Phys Anthropol 155(4), 600 (2014).
51. Batai, K. & Williams, S. R. Mitochondrial variation among the Aymara and the signatures of population expansion in the central Andes. Am J Hum Biol 26(3), 321 (2014).
52. Taboada-Echalar, P. et al. The genetic legacy of the pre-Colonial period in contemporary Bolivians. PLoS One 8(3), e58980 (2013).