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Volumn 263, Issue , 2018, Pages 216-224

Effects of fermented milk treatment on microbial population and metabolomic outcomes in a three-stage semi-continuous culture system

Author keywords

Fermented milk; Gut microbiota; In vitro colon simulation; MiSeq; NMR based metabolomics

Indexed keywords

NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

EID: 85046690538     PISSN: 03088146     EISSN: 18737072     Source Type: Journal    
DOI: 10.1016/j.foodchem.2018.04.095     Document Type: Article
Times cited : (26)

References (42)
  • 1
    • 84907340693 scopus 로고    scopus 로고
    • Survival and synergistic growth of mixed cultures of bifidobacteria and lactobacilli combined with prebiotic oligosaccharides in a gastrointestinal tract simulator
    • Adamberg, S., Sumeri, I., Uusna, R., Ambalam, P., Kondepudi, K.K., Adamberg, K., Ljungh, A., Survival and synergistic growth of mixed cultures of bifidobacteria and lactobacilli combined with prebiotic oligosaccharides in a gastrointestinal tract simulator. Microbial Ecology in Health and Disease, 25, 2014, 23062.
    • (2014) Microbial Ecology in Health and Disease , vol.25 , pp. 23062
    • Adamberg, S.1    Sumeri, I.2    Uusna, R.3    Ambalam, P.4    Kondepudi, K.K.5    Adamberg, K.6    Ljungh, A.7
  • 3
    • 84946822771 scopus 로고    scopus 로고
    • Human microbiomes and their roles in dysbiosis, common diseases, and novel therapeutic approaches
    • Belizario, J.E., Napolitano, M., Human microbiomes and their roles in dysbiosis, common diseases, and novel therapeutic approaches. Frontiers in Microbiology, 6, 2015, 1050.
    • (2015) Frontiers in Microbiology , vol.6 , pp. 1050
    • Belizario, J.E.1    Napolitano, M.2
  • 4
    • 84942154798 scopus 로고    scopus 로고
    • Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants
    • Berni Canani, R., Sangwan, N., Stefka, A.T., Nocerino, R., Paparo, L., Aitoro, R., Nagler, C.R., Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants. ISME Journal 10:3 (2016), 742–750.
    • (2016) ISME Journal , vol.10 , Issue.3 , pp. 742-750
    • Berni Canani, R.1    Sangwan, N.2    Stefka, A.T.3    Nocerino, R.4    Paparo, L.5    Aitoro, R.6    Nagler, C.R.7
  • 5
    • 0035154503 scopus 로고    scopus 로고
    • Probiotics: Determinants of survival and growth in the gut
    • Bezkorovainy, A., Probiotics: Determinants of survival and growth in the gut. The American Journal of Clinical Nutrition 73:2 Suppl (2001), 399S–405S.
    • (2001) The American Journal of Clinical Nutrition , vol.73 , Issue.2 , pp. 399S-405S
    • Bezkorovainy, A.1
  • 7
    • 84952982818 scopus 로고    scopus 로고
    • Talking microbes: When gut bacteria interact with diet and host organs
    • Cani, P.D., Everard, A., Talking microbes: When gut bacteria interact with diet and host organs. Molecular Nutrition and Food Research 60:1 (2016), 58–66.
    • (2016) Molecular Nutrition and Food Research , vol.60 , Issue.1 , pp. 58-66
    • Cani, P.D.1    Everard, A.2
  • 11
    • 85032885904 scopus 로고    scopus 로고
    • Divergent relationships between fecal microbiota and metabolome following distinct antibiotic-induced disruptions
    • e00005–00017
    • Choo, J.M., Kanno, T., Zain, N.M., Leong, L.E., Abell, G.C., Keeble, J.E., Bruce, K.D., Mason, A.J., Rogers, G.B., Divergent relationships between fecal microbiota and metabolome following distinct antibiotic-induced disruptions. mSphere, 2(1), 2017 e00005–00017.
    • (2017) mSphere , vol.2 , Issue.1
    • Choo, J.M.1    Kanno, T.2    Zain, N.M.3    Leong, L.E.4    Abell, G.C.5    Keeble, J.E.6    Bruce, K.D.7    Mason, A.J.8    Rogers, G.B.9
  • 13
    • 84947575129 scopus 로고    scopus 로고
    • Transcriptomic analysis of three Veillonella spp. present in carious dentine and in the saliva of caries-free individuals
    • Do, T., Sheehy, E.C., Mulli, T., Hughes, F., Beighton, D., Transcriptomic analysis of three Veillonella spp. present in carious dentine and in the saliva of caries-free individuals. Frontiers in Cellular and Infection Microbiology, 5, 2015, 25.
    • (2015) Frontiers in Cellular and Infection Microbiology , vol.5 , pp. 25
    • Do, T.1    Sheehy, E.C.2    Mulli, T.3    Hughes, F.4    Beighton, D.5
  • 14
    • 84856190030 scopus 로고    scopus 로고
    • Survival of lactic acid bacteria from fermented milks in an in vitro digestion model exploiting sequential incubation in human gastric and duodenum juice
    • Faye, T., Tamburello, A., Vegarud, G.E., Skeie, S., Survival of lactic acid bacteria from fermented milks in an in vitro digestion model exploiting sequential incubation in human gastric and duodenum juice. Journal of Dairy Science 95:2 (2012), 558–566.
    • (2012) Journal of Dairy Science , vol.95 , Issue.2 , pp. 558-566
    • Faye, T.1    Tamburello, A.2    Vegarud, G.E.3    Skeie, S.4
  • 15
    • 84890818028 scopus 로고    scopus 로고
    • Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota
    • Feria-Gervasio, D., Tottey, W., Gaci, N., Alric, M., Cardot, J.M., Peyret, P., Brugere, J.F., Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota. Journal of Microbiol Methods 96 (2014), 111–118.
    • (2014) Journal of Microbiol Methods , vol.96 , pp. 111-118
    • Feria-Gervasio, D.1    Tottey, W.2    Gaci, N.3    Alric, M.4    Cardot, J.M.5    Peyret, P.6    Brugere, J.F.7
  • 17
    • 84886256188 scopus 로고    scopus 로고
    • In vitro fermentation of NUTRIOSE((R)) FB06, a wheat dextrin soluble fibre, in a continuous culture human colonic model system
    • Hobden, M.R., Martin-Morales, A., Guerin-Deremaux, L., Wils, D., Costabile, A., Walton, G.E., Gibson, G.R., In vitro fermentation of NUTRIOSE((R)) FB06, a wheat dextrin soluble fibre, in a continuous culture human colonic model system. PLoS One, 8(10), 2013, e77128.
    • (2013) PLoS One , vol.8 , Issue.10 , pp. e77128
    • Hobden, M.R.1    Martin-Morales, A.2    Guerin-Deremaux, L.3    Wils, D.4    Costabile, A.5    Walton, G.E.6    Gibson, G.R.7
  • 18
    • 73449093124 scopus 로고    scopus 로고
    • Streptococcus thermophilus strains: Multifunctional lactic acid bacteria
    • Iyer, R., Tomar, S.K., Maheswari, T.U., Singh, R., Streptococcus thermophilus strains: Multifunctional lactic acid bacteria. International Dairy Journal 20:3 (2010), 133–141.
    • (2010) International Dairy Journal , vol.20 , Issue.3 , pp. 133-141
    • Iyer, R.1    Tomar, S.K.2    Maheswari, T.U.3    Singh, R.4
  • 20
    • 80052481927 scopus 로고    scopus 로고
    • Metabolomics of fecal extracts detects altered metabolic activity of gut microbiota in ulcerative colitis and irritable bowel syndrome
    • Le Gall, G., Noor, S.O., Ridgway, K., Scovell, L., Jamieson, C., Johnson, I.T., Narbad, A., Metabolomics of fecal extracts detects altered metabolic activity of gut microbiota in ulcerative colitis and irritable bowel syndrome. Journal of Proteome Research 10:9 (2011), 4208–4218.
    • (2011) Journal of Proteome Research , vol.10 , Issue.9 , pp. 4208-4218
    • Le Gall, G.1    Noor, S.O.2    Ridgway, K.3    Scovell, L.4    Jamieson, C.5    Johnson, I.T.6    Narbad, A.7
  • 21
    • 84878592844 scopus 로고    scopus 로고
    • Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus
    • Looft, T., Levine, U.Y., Stanton, T.B., Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus. International Journal of Systematic and Evolutionary Microbiology 63:Pt 6 (2013), 1960–1966.
    • (2013) International Journal of Systematic and Evolutionary Microbiology , vol.63 , pp. 1960-1966
    • Looft, T.1    Levine, U.Y.2    Stanton, T.B.3
  • 22
    • 84857090444 scopus 로고    scopus 로고
    • Potential probiotic Kluyveromyces marxianus B0399 modulates the immune response in Caco-2 cells and peripheral blood mononuclear cells and impacts the human gut microbiota in an in vitro colonic model system
    • Maccaferri, S., Klinder, A., Brigidi, P., Cavina, P., Costabile, A., Potential probiotic Kluyveromyces marxianus B0399 modulates the immune response in Caco-2 cells and peripheral blood mononuclear cells and impacts the human gut microbiota in an in vitro colonic model system. Applied and Environmental Microbiology 78:4 (2012), 956–964.
    • (2012) Applied and Environmental Microbiology , vol.78 , Issue.4 , pp. 956-964
    • Maccaferri, S.1    Klinder, A.2    Brigidi, P.3    Cavina, P.4    Costabile, A.5
  • 23
    • 0031944894 scopus 로고    scopus 로고
    • Validation of a three-stage compound continuous culture system for investigating the effect of retention time on the ecology and metabolism of bacteria in the human colon
    • Macfarlane, G.T., Macfarlane, S., Gibson, G.R., Validation of a three-stage compound continuous culture system for investigating the effect of retention time on the ecology and metabolism of bacteria in the human colon. Microbial Ecology 35:2 (1998), 180–187.
    • (1998) Microbial Ecology , vol.35 , Issue.2 , pp. 180-187
    • Macfarlane, G.T.1    Macfarlane, S.2    Gibson, G.R.3
  • 24
    • 84981713521 scopus 로고    scopus 로고
    • High-fiber and high-protein diets shape different gut microbial communities, which ecologically behave similarly under stress conditions, as shown in a gastrointestinal simulator
    • Marzorati, M., Vilchez-Vargas, R., Bussche, J.V., Truchado, P., Jauregui, R., El Hage, R.A., Van de Wiele, T., High-fiber and high-protein diets shape different gut microbial communities, which ecologically behave similarly under stress conditions, as shown in a gastrointestinal simulator. Molecular Nutrition & Food Research, 61(1), 2017, 1600150.
    • (2017) Molecular Nutrition & Food Research , vol.61 , Issue.1 , pp. 1600150
    • Marzorati, M.1    Vilchez-Vargas, R.2    Bussche, J.V.3    Truchado, P.4    Jauregui, R.5    El Hage, R.A.6    Van de Wiele, T.7
  • 26
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Nadkarni, M.A., Martin, F.E., Jacques, N.A., Hunter, N., Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 148:Pt 1 (2002), 257–266.
    • (2002) Microbiology , vol.148 , pp. 257-266
    • Nadkarni, M.A.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 27
    • 4344645434 scopus 로고    scopus 로고
    • PCR-DGGE-based quantification of stability of the microbial community in a simulator of the human intestinal microbial ecosystem
    • Possemiers, S., Verthe, K., Uyttendaele, S., Verstraete, W., PCR-DGGE-based quantification of stability of the microbial community in a simulator of the human intestinal microbial ecosystem. FEMS Microbiology Ecology 49:3 (2004), 495–507.
    • (2004) FEMS Microbiology Ecology , vol.49 , Issue.3 , pp. 495-507
    • Possemiers, S.1    Verthe, K.2    Uyttendaele, S.3    Verstraete, W.4
  • 29
    • 84980335892 scopus 로고    scopus 로고
    • Bifidobacteria and butyrate-producing colon bacteria: Importance and strategies for their stimulation in the human gut
    • Riviere, A., Selak, M., Lantin, D., Leroy, F., De Vuyst, L., Bifidobacteria and butyrate-producing colon bacteria: Importance and strategies for their stimulation in the human gut. Frontiers in Microbiology, 7, 2016, 979.
    • (2016) Frontiers in Microbiology , vol.7 , pp. 979
    • Riviere, A.1    Selak, M.2    Lantin, D.3    Leroy, F.4    De Vuyst, L.5
  • 30
    • 84857685478 scopus 로고    scopus 로고
    • Changes in the gene expression profile of Acetobacter aceti during growth on ethanol
    • Sakurai, K., Arai, H., Ishii, M., Igarashi, Y., Changes in the gene expression profile of Acetobacter aceti during growth on ethanol. Journal of Bioscience and Bioengineering 113:3 (2012), 343–348.
    • (2012) Journal of Bioscience and Bioengineering , vol.113 , Issue.3 , pp. 343-348
    • Sakurai, K.1    Arai, H.2    Ishii, M.3    Igarashi, Y.4
  • 35
    • 84940568338 scopus 로고    scopus 로고
    • Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community
    • Sugahara, H., Odamaki, T., Fukuda, S., Kato, T., Xiao, J.Z., Abe, F., Ohno, H., Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community. Scientific Reports, 5, 2015, 13548.
    • (2015) Scientific Reports , vol.5 , pp. 13548
    • Sugahara, H.1    Odamaki, T.2    Fukuda, S.3    Kato, T.4    Xiao, J.Z.5    Abe, F.6    Ohno, H.7
  • 37
    • 33747376357 scopus 로고    scopus 로고
    • Kinetic analysis of bifidobacterial metabolism reveals a minor role for succinic acid in the regeneration of NAD+ through its growth-associated production
    • Van der Meulen, R., Adriany, T., Verbrugghe, K., De Vuyst, L., Kinetic analysis of bifidobacterial metabolism reveals a minor role for succinic acid in the regeneration of NAD+ through its growth-associated production. Applied and Environmental Microbiology 72:8 (2006), 5204–5210.
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.8 , pp. 5204-5210
    • Van der Meulen, R.1    Adriany, T.2    Verbrugghe, K.3    De Vuyst, L.4
  • 38
    • 84991526597 scopus 로고    scopus 로고
    • EMPeror: A tool for visualizing high-throughput microbial community data
    • Vazquez-Baeza, Y., Pirrung, M., Gonzalez, A., Knight, R., EMPeror: A tool for visualizing high-throughput microbial community data. Gigascience, 2(1), 2013, 16.
    • (2013) Gigascience , vol.2 , Issue.1 , pp. 16
    • Vazquez-Baeza, Y.1    Pirrung, M.2    Gonzalez, A.3    Knight, R.4
  • 40
    • 79958115671 scopus 로고    scopus 로고
    • Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst
    • Xia, J., Wishart, D.S., Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst. Nature Protocols 6:6 (2011), 743–760.
    • (2011) Nature Protocols , vol.6 , Issue.6 , pp. 743-760
    • Xia, J.1    Wishart, D.S.2
  • 41
    • 84960153678 scopus 로고    scopus 로고
    • Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes
    • Zhang, C., Derrien, M., Levenez, F., Brazeilles, R., Ballal, S.A., Kim, J., Veiga, P., Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes. ISME Journal 10:9 (2016), 2235–2245.
    • (2016) ISME Journal , vol.10 , Issue.9 , pp. 2235-2245
    • Zhang, C.1    Derrien, M.2    Levenez, F.3    Brazeilles, R.4    Ballal, S.A.5    Kim, J.6    Veiga, P.7
  • 42
    • 84963799511 scopus 로고    scopus 로고
    • Strain-level dissection of the contribution of the gut microbiome to human metabolic disease
    • Zhang, C., Zhao, L., Strain-level dissection of the contribution of the gut microbiome to human metabolic disease. Genome Medicine, 8(1), 2016, 41.
    • (2016) Genome Medicine , vol.8 , Issue.1 , pp. 41
    • Zhang, C.1    Zhao, L.2


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