Changes in the gene expression profile of Acetobacter aceti during growth on ethanol

Journal of Bioscience and Bioengineering

Volumn 113, Issue 3, 2012, Pages 343-348

  Sakurai, Kenta ^a   Arai, Hiroyuki ^a   Ishii, Masaharu ^a   Igarashi, Yasuo ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Acetate; Acetobacter aceti; Ethanol; Oxidative fermentation; Transcriptome

Indexed keywords

A-CARBON; ACETATE; ALCOHOL DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; CONTROL OF STRESS; DIAUXIC GROWTH; DNA MICRO-ARRAY; EXPRESSION LEVELS; GENE EXPRESSION PROFILES; GENES ENCODING; GLYOXYLATE PATHWAY; MEMBRANE-BOUND; METABOLIC FLOW; OVEROXIDATIONS; OXIDATIVE FERMENTATION; PYRROLOQUINOLINE; SEQUENTIAL REACTION; TCA CYCLE; TIME-DEPENDENT; TRANSCRIPTOMES; TRICARBOXYLIC ACIDS;

ACETOBACTER; ALDEHYDES; CELL CULTURE; ENCODING (SYMBOLS); ENZYMES; GENE EXPRESSION; METABOLISM; VOLATILE FATTY ACIDS;

ETHANOL;

ACONITATE HYDRATASE; ALCOHOL; ALCOHOL DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; CATALASE; CITRATE SYNTHASE; FUMARATE HYDRATASE; ISOCITRATE DEHYDROGENASE; MALATE DEHYDROGENASE (DECARBOXYLATING); OXOGLUTARATE DEHYDROGENASE; PHOSPHOENOLPYRUVATE CARBOXYLASE; PYRROLOQUINOLINEQUINONE; PYRUVATE DECARBOXYLASE; PYRUVATE DEHYDROGENASE; PYRUVATE KINASE; SUCCINATE DEHYDROGENASE; SUCCINYL COENZYME A SYNTHETASE; SUPEROXIDE DISMUTASE; TRICARBOXYLIC ACID;

ACETOBACTER; ACETOBACTER ACETI; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; DNA MICROARRAY; DOWN REGULATION; GENE EXPRESSION; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; UPREGULATION;

ACETOBACTER; ALCOHOL DEHYDROGENASE; ETHANOL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

ACETOBACTER ACETI;

EID: 84857685478     PISSN: 13891723     EISSN: 13474421     Source Type: Journal    
DOI: 10.1016/j.jbiosc.2011.11.005     Document Type: Article

References (23)

1. Asai T. Acetic acid bacteria: Classification and biochemical activities 1968, University of Tokyo Press, Tokyo.
2. Yakushi T., Matsushita K. Alcohol dehydrogenase of acetic acid bacteria: structure, mode of action, and applications in biotechnology. Appl. Microbiol. Biotechnol. 2010, 86:1257-1265.
3. Saeki A., Taniguchi M., Matsushita K., Toyama H., Theeragool G., Lotong N., Adachi O. Microbiological aspects of acetate oxidation by acetic acid bacteria, unfavorable phenomena in vinegar fermentation. Biosci. Biotechnol. Biochem. 1997, 61:317-323.
4. Saeki A., Matsushita K., Takeno S., Taniguchi M., Toyama H., Theeragool G., Lotong N., Adachi O. Enzymes responsible for acetate oxidation by acetic acid bacteria. Biosci. Biotechnol. Biochem. 1999, 63:2102-2109.
5. Ishikawa M., Okamoto-Kainuma A., Jochi T., Suzuki I., Matsui K., Kaga T., Koizumi Y. Cloning and characterization of grpE in Acetobacter pasteurianus NBRC 3283. J. Biosci. Bioeng. 2010, 109:25-31.
6. Ishikawa M., Okamoto-Kainuma A., Matsui K., Takigishi A., Kaga T., Koizumi Y. Cloning and characterization of clpB in Acetobacter pasteurianus NBRC 3283. J. Biosci. Bioeng. 2010, 110:69-71.
7. Okamoto-Kainuma A., Yan W., Fukaya M., Tukamoto Y., Ishikawa M., Koizumi Y. Cloning and characterization of the dnaKJ operon in Acetobacter aceti. J. Biosci. Bioeng. 2004, 97:339-342.
8. Sakurai K., Arai H., Ishii M., Igarashi Y. Transcriptome response to different carbon sources in Acetobacter aceti. Microbiology 2011, 157:899-910.
9. Nakano S., Fukaya M., Horinouchi S. Putative ABC transporter responsible for acetic acid resistance in Acetobacter aceti. Appl. Environ. Microbiol. 2006, 72:497-505.
10. Hanada T., Kashima Y., Kosugi A., Koizumi Y., Yanagida F., Udaka S. A gene encoding phosphatidylethanolamine N-methyltransferase from Acetobacter aceti and some properties of its disruptant. Biosci. Biotechnol. Biochem. 2001, 65:2741-2748.
11. Matsushita K., Inoue T., Adachi O., Toyama H. Acetobacter aceti possesses a proton motive force-dependent efflux system for acetic acid. J. Bacteriol. 2005, 187:4346-4352.
12. Bolstad B.M., Irizarry R.A., Astrand M., Speed T.P. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193.
13. Irizarry R.A., Bolstad B.M., Collin F., Cope L.M., Hobbs B., Speed T.P. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 2003, 31:e15.
14. Nakano S., Fukaya M., Horinouchi S. Enhanced expression of aconitase raises acetic acid resistance in Acetobacter aceti. FEMS Microbiol. Lett. 2004, 235:315-322.
15. Mullins E.A., Francois J.A., Kappock T.J. A specialized citric acid cycle requiring succinyl-coenzyme A (CoA):acetate CoA-transferase (AarC) confers acetic acid resistance on the acidophile Acetobacter aceti. J. Bacteriol. 2008, 190:4933-4940.
16. Kornberg H.L., Krebs H.A. Synthesis of cell constituents from C2-units by a modified tricarboxylic acid cycle. Nature 1957, 179:988-991.
17. Jucker W., Ettlinger L. The inhibition of acetate oxidation by ethanol in Acetobacter aceti. Arch. Microbiol. 1985, 143:283-289.
18. Matsushita K., Yakushi T., Takaki Y., Toyama H., Adachi O. Generation mechanism and purification of an inactive form conversible in vivo to the active form of quinoprotein alcohol dehydrogenase in Gluconobacter suboxydans. J. Bacteriol. 1995, 177:6552-6559.
19. Calhoun M.W., Oden K.L., Gennis R.B., Teixeira de Mattos M.J., Neijssel O.M. Energetic efficiency of Escherichia coli: effects of mutations in components of the aerobic respiratory chain. J. Bacteriol. 1993, 175:3020-3025.
20. Leif H., Sled V.D., Ohnishi T., Weiss H., Friedrich T. Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli. Eur. J. Biochem. 1995, 230:538-548.
21. Okamoto-Kainuma A., Ehata Y., Ikeda M., Osono T., Ishikawa M., Kaga T., Koizumi Y. Hydrogen peroxide resistance of Acetobacter pasteurianus NBRC3283 and its relationship to acetic acid fermentation. Biosci. Biotechnol. Biochem. 2008, 72:2526-2534.
22. Tahara Y., Yamada Y., Kondo K. Phospholipid composition of Gluconobacter cerinus. Agric. Biol. Chem. 1976, 40:2355-2360.
23. Trcek J., Jernejc K., Matsushita K. The highly tolerant acetic acid bacterium Gluconacetobacter europaeus adapts to the presence of acetic acid by changes in lipid composition, morphological properties and PQQ-dependent ADH expression. Extremophiles 2007, 11:627-635.