Strategy for Nuclear-Magnetic-Resonance-Based Metabolomics of Human Feces

Analytical Chemistry

Volumn 87, Issue 12, 2015, Pages 5930-5937

  Lamichhane, Santosh ^a   Yde, Christian C ^a   Schmedes, Mette S ^a   Jensen, Henrik Max ^b   Meier, Sebastian ^c   Bertram, Hanne Christine ^a  

^a AARHUS UNIVERSITY   (Denmark)

^b DUPONT COMPANY   (United States)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; CHEMICAL SHIFT; ECOLOGY; EXTRACTION; METABOLISM; METABOLITES; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SOLVENT EXTRACTION;

EXTRACTION SOLVENTS; FREEZE-THAW CYCLES; H NMR SPECTROSCOPY; METABOLIC INFORMATION; METABOLOMIC ANALYSIS; MICROBIAL ECOLOGY; REPRODUCIBILITIES; SAMPLE PREPARATION;

SIGNAL TO NOISE RATIO;

CHEMISTRY; FECES; HUMAN; METABOLOMICS; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROCEDURES;

FECES; HEALTHY VOLUNTEERS; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; METABOLOMICS;

EID: 84934902525     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/acs.analchem.5b00977     Document Type: Article

References (33)

1. Averna, T. A.; Kline, E. E.; Smith, A. Y.; Sillerud, L. O. J. Urol. 2005, 173, 433-438
2. Beckonert, O.; Keun, H. C.; Ebbels, T. M.; Bundy, J.; Holmes, E.; Lindon, J. C.; Nicholson, J. K. Nat. Protoc 2007, 2, 2692-2703
3. Bertram, H. C.; Eggers, N.; Eller, N. Anal. Chem. 2009, 81, 9188-9193
4. Bertram, H. C.; Malmendal, A.; Petersen, B. O.; Madsen, J. C.; Pedersen, H.; Nielsen, N. C.; Hoppe, C.; Mølgaard, C.; Michaelsen, K. F.; Duus, J. Ø. Anal. Chem. 2007, 79, 7110-7115
5. Bäckhed, F.; Ding, H.; Wang, T.; Hooper, L. V.; Gou, Y. K.; Nagy, A.; Semenkovich, C. F.; Gordon, J. I. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 15718-15723
6. Gao, X.; Pujos-Guillot, E.; Sebedio, J. L. Anal. Chem. 2010, 82, 6447-6456
7. Hooper, L. V.; Midwedt, T.; Gordon, J. I. Annu. Rev. Nutr. 2002, 283-307
8. Nicholson, J. K.; Holmes, E.; Kinross, J.; Burcelin, R.; Gibson, G.; Jia, W.; Pettersson, S. Science 2012, 336, 1262-1267
9. Turnbaugh, P. J.; Ley, R. E.; Mahowald, M. A.; Magrini, V.; Mardis, E. R.; Gordon, J. I. Nature 2006, 444, 1027-1031
10. Rath, C. M.; Alexandrov, T.; Higginbottom, S. K.; Song, J.; Milla, M. E.; Fischbach, M. A.; Sonnenburg, J. L.; Dorrestein, P. C. Anal. Chem. 2012, 84, 9259-9267
11. Gregory, K. E.; Bird, S. S.; Gross, V. S.; Marur, V. R.; Lazarev, A. V.; Walker, W. A.; Kristal, B. S. Anal. Chem. 2013, 85, 1114-1123
12. Rezzi, S.; Ramadan, Z.; Fay, L. B.; Kochhar, S. J. Proteome Res. 2007, 6, 513-525
13. Lamichhane, S.; Yde, C. C.; Forssten, S.; Ouwehand, A. C.; Saarinen, M.; Jensen, H. M.; Gibson, G. R.; Rastall, R.; Fava, F.; Bertram, H. C. J. Agric. Food Chem. 2014, 62, 9944-9951
14. Le Gall, G.; Noor, S. O.; Ridgway, K.; Scovell, L.; Jamieson, C.; Johnson, I. T.; Colquhoun, I. J.; Kemsley, E. K.; Narbad, A. J. Proteome Res. 2011, 10, 4208-4218
15. Marchesi, J. R.; Holmes, E.; Khan, F.; Kochhar, S.; Scanlan, P.; Shanahan, F.; Wilson, I. D.; Wang, Y. J. Proteome Res. 2007, 6, 546-551
16. Monleón, D.; Morales, J. M.; Barrasa, A.; López, J. A.; Vázquez, C.; Celda, B. NMR Biomed. 2009, 22, 342-348
17. Martin, F. P. J.; Sprenger, N.; Montoliu, I.; Rezzi, S.; Kochhar, S.; Nicholson, J. K. J. Proteome Res. 2010, 9, 5284-5295
18. Jacobs, D. M.; Deltimple, N.; van Velzen, E.; van Dorsten, F. A.; Bingham, M.; Vaughan, E. E.; van Duynhoven, J. NMR Biomed. 2008, 21, 615-626
19. Saric, J.; Wang, Y.; Li, J.; Coen, M.; Utzinger, J.; Marchesi, J. R.; Keiser, J.; Veselkov, K.; Lindon, J. C.; Nicholson, J. K.; Holmes, E. J. Proteome Res. 2008, 7, 352-360
20. Pettersson, J.; Karlsson, P. C.; Choi, Y. H.; Verpoorte, R.; Rafter, J. J.; Bohlin, L. Biol. Pharm. Bullet. 2008, 31, 1192-1198
21. Ndagijimana, M.; Laghi, L.; Vitali, B.; Placucci, G.; Brigidi, P.; Guerzoni, M. E. Int. J. Food Microbiol. 2009, 134, 147-153
22. Romick-Rosendale, L. E.; Goodpaster, A. M.; Hanwright, P. J.; Patel, N. B.; Wheeler, E. T.; Chona, D. L.; Kennedy, M. A. Magn. Reson. Chem. 2009, 47, S36-S46
23. Zhao, Y.; Wu, J.; Li, J. V.; Zhou, N. Y.; Tang, H.; Wang, Y. J. Proteome Res. 2013, 12, 2987-2999
24. Wu, J.; An, Y.; Yao, J.; Wang, Y.; Tang, H. Analyst 2010, 135, 1023-1030
25. Wishart, D. S.; Knox, C.; Guo, A. C.; Eisner, R.; Young, N.; Gautam, B.; Hau, D. D.; Psychogios, N.; Dong, E.; Bouatra, S.; Mandal, R.; Sinelnikov, I.; Xia, J.; Jia, L.; Cruz, J. A.; Lim, E.; Sobsey, C. A.; Shrivastava, S.; Huang, P.; Liu, P.; Fang, L.; Peng, J.; Fradette, R.; Cheng, D.; Tzur, D.; Clements, M.; Lewis, A.; de souza, A.; Zuniga, A.; Dawe, M.; Xiong, Y.; Clive, D.; Greiner, R.; Nazyrova, A.; Shaykhutdinov, R.; Li, L.; Vogel, H. J.; Forsythei, I. Nucleic Acids Res. 2009, 37, D603-D610
26. Bojstrup, M.; Petersen, B. O.; Beeren, S. R.; Hindsgaul, O.; Meier, S. Anal. Chem. 2013, 85, 8802-8808
27. Savorani, F.; Tomasi, G.; Engelsen, S. B. J. Magn. Reson. 2010, 202, 190-202
28. Harwood, L. J.; Weselake, J. R., 1H NMR spectroscopy of fatty acids and their derivatives [Online] 2005, http://lipidlibrary.aocs.org/nmr/1NMRintr/index.htm (accessed Feb 26, 2015).
29. Willker, W.; Leibfritz, D. Magn. Reson. Chem. 1998, 36, S79-S84
30. Pulkkinen, M. O.; Nyman, S.; Hamalainen, M. M.; Mattinen, J. Gynecol. Obstet. Invest. 1998, 46, 220-224
31. Vu, T. N.; Laukens, K. Metabolites 2013, 3, 259-276
32. Alonso, A.; Rodriguez, M. A.; Vinaixa, M.; Tortosa, R.; Correig, X.; Julia, A.; Marsal, S. Anal. Chem. 2014, 86, 1160-1169
33. Lewis, S. J.; Heaton, K. W. Scand. J. Gastro. 1997, 32, 920-924