-
1
-
-
13444272070
-
The biomolecular interaction network database and related tools 2005 update
-
Alfarano, C., Andrade, C.E., Anthony, K., Bahroos, N., Bajec, M., Bantoft, K., Betel, D., Bobechko, B., Boutilier, K., Burgess, E., et al. The biomolecular interaction network database and related tools 2005 update. Nucleic Acids Res. 33 (2005), D418–D424.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. D418-D424
-
-
Alfarano, C.1
Andrade, C.E.2
Anthony, K.3
Bahroos, N.4
Bajec, M.5
Bantoft, K.6
Betel, D.7
Bobechko, B.8
Boutilier, K.9
Burgess, E.10
-
2
-
-
75549087047
-
The IntAct molecular interaction database in 2010
-
Aranda, B., Achuthan, P., Alam-Faruque, Y., Armean, I., Bridge, A., Derow, C., Feuermann, M., Ghanbarian, A.T., Kerrien, S., Khadake, J., et al. The IntAct molecular interaction database in 2010. Nucleic Acids Res. 38 (2010), D525–D531.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D525-D531
-
-
Aranda, B.1
Achuthan, P.2
Alam-Faruque, Y.3
Armean, I.4
Bridge, A.5
Derow, C.6
Feuermann, M.7
Ghanbarian, A.T.8
Kerrien, S.9
Khadake, J.10
-
3
-
-
0035171884
-
BIND—the biomolecular interaction network database
-
Bader, G.D., Donaldson, I., Wolting, C., Ouellette, B.F.F., Pawson, T., Hogue, C.W.V., BIND—the biomolecular interaction network database. Nucleic Acids Res. 29 (2001), 242–245.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 242-245
-
-
Bader, G.D.1
Donaldson, I.2
Wolting, C.3
Ouellette, B.F.F.4
Pawson, T.5
Hogue, C.W.V.6
-
4
-
-
0037245913
-
BIND: the biomolecular interaction network database
-
Bader, G.D., Betel, D., Hogue, C.W.V., BIND: the biomolecular interaction network database. Nucleic Acids Res. 31 (2003), 248–250.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.V.3
-
5
-
-
33644873677
-
Pathguide: a pathway resource list
-
Bader, G.D., Cary, M.P., Sander, C., Pathguide: a pathway resource list. Nucleic Acids Res. 34 (2006), D504–D506.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D504-D506
-
-
Bader, G.D.1
Cary, M.P.2
Sander, C.3
-
6
-
-
0037264524
-
The GRID: the general repository for interaction datasets
-
Breitkreutz, B.J., Stark, C., Tyers, M., The GRID: the general repository for interaction datasets. Genome Biol., 4, 2003, R23.
-
(2003)
Genome Biol.
, vol.4
, pp. R23
-
-
Breitkreutz, B.J.1
Stark, C.2
Tyers, M.3
-
7
-
-
38549173606
-
The BioGRID interaction database: 2008 update
-
Breitkreutz, B.J., Stark, C., Reguly, T., Boucher, L., Breitkreutz, A., Livstone, M., Oughtred, R., Lackner, D.H., Bähler, J., Wood, V., et al. The BioGRID interaction database: 2008 update. Nucleic Acids Res. 36 (2008), D637–D640.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. D637-D640
-
-
Breitkreutz, B.J.1
Stark, C.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Livstone, M.6
Oughtred, R.7
Lackner, D.H.8
Bähler, J.9
Wood, V.10
-
8
-
-
84881455143
-
mentha: a resource for browsing integrated protein-interaction networks
-
Calderone, A., Castagnoli, L., Cesareni, G., mentha: a resource for browsing integrated protein-interaction networks. Nat. Methods 10 (2013), 690–691.
-
(2013)
Nat. Methods
, vol.10
, pp. 690-691
-
-
Calderone, A.1
Castagnoli, L.2
Cesareni, G.3
-
9
-
-
84902463639
-
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence
-
Cao, M., Pietras, C.M., Feng, X., Doroschak, K.J., Schaffner, T., Park, J., Zhang, H., Cowen, L.J., Hescott, B.J., New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence. Bioinformatics 30 (2014), i219–i227.
-
(2014)
Bioinformatics
, vol.30
, pp. i219-i227
-
-
Cao, M.1
Pietras, C.M.2
Feng, X.3
Doroschak, K.J.4
Schaffner, T.5
Park, J.6
Zhang, H.7
Cowen, L.J.8
Hescott, B.J.9
-
10
-
-
84871969762
-
Large-scale association analysis identifies new risk loci for coronary artery disease
-
CARDIoGRAMplusC4D Consortium, Deloukas, P., Kanoni, S., Willenborg, C., Farrall, M., Assimes, T.L., Thompson, J.R., Ingelsson, E., Saleheen, D., Erdmann, J., et al. Large-scale association analysis identifies new risk loci for coronary artery disease. Nat. Genet. 45 (2013), 25–33.
-
(2013)
Nat. Genet.
, vol.45
, pp. 25-33
-
-
CARDIoGRAMplusC4D Consortium1
Deloukas, P.2
Kanoni, S.3
Willenborg, C.4
Farrall, M.5
Assimes, T.L.6
Thompson, J.R.7
Ingelsson, E.8
Saleheen, D.9
Erdmann, J.10
-
11
-
-
84889609911
-
Genotype to phenotype via network analysis
-
Carter, H., Hofree, M., Ideker, T., Genotype to phenotype via network analysis. Curr. Opin. Genet. Dev. 23 (2013), 611–621.
-
(2013)
Curr. Opin. Genet. Dev.
, vol.23
, pp. 611-621
-
-
Carter, H.1
Hofree, M.2
Ideker, T.3
-
12
-
-
78651332286
-
Pathway Commons, a web resource for biological pathway data
-
Cerami, E.G., Gross, B.E., Demir, E., Rodchenkov, I., Babur, O., Anwar, N., Schultz, N., Bader, G.D., Sander, C., Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res. 39 (2011), D685–D690.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D685-D690
-
-
Cerami, E.G.1
Gross, B.E.2
Demir, E.3
Rodchenkov, I.4
Babur, O.5
Anwar, N.6
Schultz, N.7
Bader, G.D.8
Sander, C.9
-
13
-
-
84874947727
-
The BioGRID interaction database: 2013 update
-
Chatr-Aryamontri, A., Breitkreutz, B.-J., Heinicke, S., Boucher, L., Winter, A., Stark, C., Nixon, J., Ramage, L., Kolas, N., O'Donnell, L., et al. The BioGRID interaction database: 2013 update. Nucleic Acids Res. 41 (2013), D816–D823.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D816-D823
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.-J.2
Heinicke, S.3
Boucher, L.4
Winter, A.5
Stark, C.6
Nixon, J.7
Ramage, L.8
Kolas, N.9
O'Donnell, L.10
-
14
-
-
84941145210
-
The BioGRID interaction database: 2015 update
-
Chatr-Aryamontri, A., Breitkreutz, B.J., Oughtred, R., Boucher, L., Heinicke, S., Chen, D., Stark, C., Breitkreutz, A., Kolas, N., O'Donnell, L., et al. The BioGRID interaction database: 2015 update. Nucleic Acids Res. 43 (2015), D470–D478.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D470-D478
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.J.2
Oughtred, R.3
Boucher, L.4
Heinicke, S.5
Chen, D.6
Stark, C.7
Breitkreutz, A.8
Kolas, N.9
O'Donnell, L.10
-
15
-
-
78651275182
-
Reactome: a database of reactions, pathways and biological processes
-
Croft, D., O'Kelly, G., Wu, G., Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G., Jassal, B., et al. Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res. 39 (2011), D691–D697.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D691-D697
-
-
Croft, D.1
O'Kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, L.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
-
16
-
-
84891753483
-
The Reactome pathway knowledgebase
-
Croft, D., Mundo, A.F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M.R., et al. The Reactome pathway knowledgebase. Nucleic Acids Res. 42 (2014), D472–D477.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D472-D477
-
-
Croft, D.1
Mundo, A.F.2
Haw, R.3
Milacic, M.4
Weiser, J.5
Wu, G.6
Caudy, M.7
Garapati, P.8
Gillespie, M.9
Kamdar, M.R.10
-
17
-
-
84864376672
-
HINT: high-quality protein interactomes and their applications in understanding human disease
-
Das, J., Yu, H., HINT: high-quality protein interactomes and their applications in understanding human disease. BMC Syst. Biol., 6, 2012, 92.
-
(2012)
BMC Syst. Biol.
, vol.6
, pp. 92
-
-
Das, J.1
Yu, H.2
-
18
-
-
84976870113
-
The reactome pathway knowledgebase
-
Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., et al. The reactome pathway knowledgebase. Nucleic Acids Res. 44 (2016), D481–D487.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D481-D487
-
-
Fabregat, A.1
Sidiropoulos, K.2
Garapati, P.3
Gillespie, M.4
Hausmann, K.5
Haw, R.6
Jassal, B.7
Jupe, S.8
Korninger, F.9
McKay, S.10
-
19
-
-
84876515907
-
STRING v9. 1: protein-protein interaction networks, with increased coverage and integration
-
Franceschini, A., Szklarczyk, D., Frankild, S., Kuhn, M., Simonovic, M., Roth, A., Lin, J., Minguez, P., Bork, P., Von Mering, C., et al. STRING v9. 1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 41 (2013), D808–D815.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D808-D815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Lin, J.7
Minguez, P.8
Bork, P.9
Von Mering, C.10
-
20
-
-
21044456097
-
Biomolecular interaction network database
-
Gilbert, D., Biomolecular interaction network database. Brief. Bioinform. 6 (2005), 194–198.
-
(2005)
Brief. Bioinform.
, vol.6
, pp. 194-198
-
-
Gilbert, D.1
-
21
-
-
84930083700
-
Understanding multicellular function and disease with human tissue-specific networks
-
Greene, C.S., Krishnan, A., Wong, A.K., Ricciotti, E., Zelaya, R.A., Himmelstein, D.S., Zhang, R., Hartmann, B.M., Zaslavsky, E., Sealfon, S.C., et al. Understanding multicellular function and disease with human tissue-specific networks. Nat. Genet. 47 (2015), 569–576.
-
(2015)
Nat. Genet.
, vol.47
, pp. 569-576
-
-
Greene, C.S.1
Krishnan, A.2
Wong, A.K.3
Ricciotti, E.4
Zelaya, R.A.5
Himmelstein, D.S.6
Zhang, R.7
Hartmann, B.M.8
Zaslavsky, E.9
Sealfon, S.C.10
-
22
-
-
9144248312
-
IntAct: an open source molecular interaction database
-
Hermjakob, H., Montecchi-Palazzi, L., Lewington, C., Mudali, S., Kerrien, S., Orchard, S., Vingron, M., Roechert, B., Roepstorff, P., Valencia, A., et al. IntAct: an open source molecular interaction database. Nucleic Acids Res. 32 (2004), D452–D455.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D452-D455
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
Vingron, M.7
Roechert, B.8
Roepstorff, P.9
Valencia, A.10
-
23
-
-
84988589217
-
Analyzing and interpreting genome data at the network level with ConsensusPathDB
-
Herwig, R., Hardt, C., Lienhard, M., Kamburov, A., Analyzing and interpreting genome data at the network level with ConsensusPathDB. Nat. Protoc. 11 (2016), 1889–1907.
-
(2016)
Nat. Protoc.
, vol.11
, pp. 1889-1907
-
-
Herwig, R.1
Hardt, C.2
Lienhard, M.3
Kamburov, A.4
-
24
-
-
84978621488
-
Inferring causal molecular networks: empirical assessment through a community-based effort
-
Hill, S.M., Heiser, L.M., Cokelaer, T., Unger, M., Nesser, N.K., Carlin, D.E., Zhang, Y., Sokolov, A., Paull, E.O., Wong, C.K., et al. Inferring causal molecular networks: empirical assessment through a community-based effort. Nat. Methods 13 (2016), 310–318.
-
(2016)
Nat. Methods
, vol.13
, pp. 310-318
-
-
Hill, S.M.1
Heiser, L.M.2
Cokelaer, T.3
Unger, M.4
Nesser, N.K.5
Carlin, D.E.6
Zhang, Y.7
Sokolov, A.8
Paull, E.O.9
Wong, C.K.10
-
25
-
-
84887084951
-
Network-based stratification of tumor mutations
-
Hofree, M., Shen, J.P., Carter, H., Gross, A., Ideker, T., Network-based stratification of tumor mutations. Nat. Methods 10 (2013), 1108–1115.
-
(2013)
Nat. Methods
, vol.10
, pp. 1108-1115
-
-
Hofree, M.1
Shen, J.P.2
Carter, H.3
Gross, A.4
Ideker, T.5
-
26
-
-
84937213168
-
The BioPlex network: a systematic exploration of the human interactome
-
Huttlin, E.L., Ting, L., Bruckner, R.J., Gebreab, F., Gygi, M.P., Szpyt, J., Tam, S., Zarraga, G., Colby, G., Baltier, K., et al. The BioPlex network: a systematic exploration of the human interactome. Cell 162 (2015), 425–440.
-
(2015)
Cell
, vol.162
, pp. 425-440
-
-
Huttlin, E.L.1
Ting, L.2
Bruckner, R.J.3
Gebreab, F.4
Gygi, M.P.5
Szpyt, J.6
Tam, S.7
Zarraga, G.8
Colby, G.9
Baltier, K.10
-
27
-
-
85019703671
-
Architecture of the human interactome defines protein communities and disease networks
-
Huttlin, E.L., Bruckner, R.J., Paulo, J.A., Cannon, J.R., Ting, L., Baltier, K., Colby, G., Gebreab, F., Gygi, M.P., Parzen, H., et al. Architecture of the human interactome defines protein communities and disease networks. Nature 545 (2017), 505–509.
-
(2017)
Nature
, vol.545
, pp. 505-509
-
-
Huttlin, E.L.1
Bruckner, R.J.2
Paulo, J.A.3
Cannon, J.R.4
Ting, L.5
Baltier, K.6
Colby, G.7
Gebreab, F.8
Gygi, M.P.9
Parzen, H.10
-
28
-
-
58149193234
-
STRING 8—a global view on proteins and their functional interactions in 630 organisms
-
Jensen, L.J., Kuhn, M., Stark, M., Chaffron, S., Creevey, C., Muller, J., Doerks, T., Julien, P., Roth, A., Simonovic, M., et al. STRING 8—a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37 (2009), D412–D416.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D412-D416
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
Doerks, T.7
Julien, P.8
Roth, A.9
Simonovic, M.10
-
29
-
-
13444259844
-
Reactome: a knowledgebase of biological pathways
-
Joshi-Tope, G., Gillespie, M., Vastrik, I., D'Eustachio, P., Schmidt, E., de Bono, B., Jassal, B., Gopinath, G.R., Wu, G.R., Matthews, L., et al. Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. 33 (2005), D428–D432.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. D428-D432
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'Eustachio, P.4
Schmidt, E.5
de Bono, B.6
Jassal, B.7
Gopinath, G.R.8
Wu, G.R.9
Matthews, L.10
-
30
-
-
58149194611
-
ConsensusPathDB—a database for integrating human functional interaction networks
-
Kamburov, A., Wierling, C., Lehrach, H., Herwig, R., ConsensusPathDB—a database for integrating human functional interaction networks. Nucleic Acids. 37:Database issue (2009), D623–D628.
-
(2009)
Nucleic Acids.
, vol.37
, Issue.Database issue
, pp. D623-D628
-
-
Kamburov, A.1
Wierling, C.2
Lehrach, H.3
Herwig, R.4
-
31
-
-
78651335912
-
ConsensusPathDB: toward a more complete picture of cell biology
-
Kamburov, A., Pentchev, K., Galicka, H., Wierling, C., Lehrach, H., Herwig, R., ConsensusPathDB: toward a more complete picture of cell biology. Nucleic Acids Res. 39 (2011), D712–D717.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D712-D717
-
-
Kamburov, A.1
Pentchev, K.2
Galicka, H.3
Wierling, C.4
Lehrach, H.5
Herwig, R.6
-
32
-
-
84876008750
-
The ConsensusPathDB interaction database: 2013 update
-
Kamburov, A., Stelzl, U., Lehrach, H., Herwig, R., The ConsensusPathDB interaction database: 2013 update. Nucleic Acids Res. 41 (2013), D793–D800.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D793-D800
-
-
Kamburov, A.1
Stelzl, U.2
Lehrach, H.3
Herwig, R.4
-
33
-
-
33846047770
-
IntAct—open source resource for molecular interaction data
-
Kerrien, S., Alam-Faruque, Y., Aranda, B., Bancarz, I., Bridge, A., Derow, C., Dimmer, E., Feuermann, M., Friedrichsen, A., Huntley, R., et al. IntAct—open source resource for molecular interaction data. Nucleic Acids Res. 35 (2007), D561–D565.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D561-D565
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
Bridge, A.5
Derow, C.6
Dimmer, E.7
Feuermann, M.8
Friedrichsen, A.9
Huntley, R.10
-
34
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
Kerrien, S., Aranda, B., Breuza, L., Bridge, A., Broackes-Carter, F., Chen, C., Duesbury, M., Dumousseau, M., Feuermann, M., Hinz, U., et al. The IntAct molecular interaction database in 2012. Nucleic Acids Res. 40 (2012), D841–D846.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D841-D846
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
-
35
-
-
84876009220
-
Interpretation of genomic variants using a unified biological network approach
-
Khurana, E., Fu, Y., Chen, J., Gerstein, M., Interpretation of genomic variants using a unified biological network approach. PLoS Comput. Biol., 9, 2013, e1002886.
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1002886
-
-
Khurana, E.1
Fu, Y.2
Chen, J.3
Gerstein, M.4
-
36
-
-
84905568914
-
Identifying disease candidate genes via large-scale gene network analysis
-
Kim, H., Park, T., Gelenbe, E., Identifying disease candidate genes via large-scale gene network analysis. Int. J. Data Min. Bioinform. 10 (2014), 175–188.
-
(2014)
Int. J. Data Min. Bioinform.
, vol.10
, pp. 175-188
-
-
Kim, H.1
Park, T.2
Gelenbe, E.3
-
37
-
-
85028340650
-
Decomposing oncogenic transcriptional signatures to generate maps of divergent cellular states
-
Kim, J.W., Abudayyeh, O.O., Yeerna, H., Yeang, C.H., Stewart, M., Jenkins, R.W., Kitajima, S., Konieczkowski, D.J., Medetgul-Ernar, K., Cavazos, T., et al. Decomposing oncogenic transcriptional signatures to generate maps of divergent cellular states. Cell Syst. 5 (2017), 105–118.e9.
-
(2017)
Cell Syst.
, vol.5
, pp. 105-118.e9
-
-
Kim, J.W.1
Abudayyeh, O.O.2
Yeerna, H.3
Yeang, C.H.4
Stewart, M.5
Jenkins, R.W.6
Kitajima, S.7
Konieczkowski, D.J.8
Medetgul-Ernar, K.9
Cavazos, T.10
-
38
-
-
41549139527
-
Walking the interactome for prioritization of candidate disease genes
-
Köhler, S., Bauer, S., Horn, D., Robinson, P.N., Walking the interactome for prioritization of candidate disease genes. Am. J. Hum. Genet. 82 (2008), 949–958.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 949-958
-
-
Köhler, S.1
Bauer, S.2
Horn, D.3
Robinson, P.N.4
-
39
-
-
79959898376
-
Prioritizing candidate disease genes by network-based boosting of genome-wide association data
-
Lee, I., Blom, U.M., Wang, P.I., Shim, J.E., Marcotte, E.M., Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome Res. 21 (2011), 1109–1121.
-
(2011)
Genome Res.
, vol.21
, pp. 1109-1121
-
-
Lee, I.1
Blom, U.M.2
Wang, P.I.3
Shim, J.E.4
Marcotte, E.M.5
-
40
-
-
84926157747
-
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
-
Leiserson, M.D.M., Vandin, F., Wu, H.-T., Dobson, J.R., Eldridge, J.V., Thomas, J.L., Papoutsaki, A., Kim, Y., Niu, B., McLellan, M., et al. Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes. Nat. Genet. 47 (2015), 106–114.
-
(2015)
Nat. Genet.
, vol.47
, pp. 106-114
-
-
Leiserson, M.D.M.1
Vandin, F.2
Wu, H.-T.3
Dobson, J.R.4
Eldridge, J.V.5
Thomas, J.L.6
Papoutsaki, A.7
Kim, Y.8
Niu, B.9
McLellan, M.10
-
41
-
-
84997794652
-
A scored human protein-protein interaction network to catalyze genomic interpretation
-
Li, T., Wernersson, R., Hansen, R.B., Horn, H., Mercer, J., Slodkowicz, G., Workman, C.T., Rigina, O., Rapacki, K., Stærfeldt, H.H., et al. A scored human protein-protein interaction network to catalyze genomic interpretation. Nat. Methods 14 (2017), 61–64.
-
(2017)
Nat. Methods
, vol.14
, pp. 61-64
-
-
Li, T.1
Wernersson, R.2
Hansen, R.B.3
Horn, H.4
Mercer, J.5
Slodkowicz, G.6
Workman, C.T.7
Rigina, O.8
Rapacki, K.9
Stærfeldt, H.H.10
-
42
-
-
79958135926
-
Molecular signatures database (MSigDB) 3.0
-
Liberzon, A., Subramanian, A., Pinchback, R., Thorvaldsdóttir, H., Tamayo, P., Mesirov, J.P., Molecular signatures database (MSigDB) 3.0. Bioinformatics 27 (2011), 1739–1740.
-
(2011)
Bioinformatics
, vol.27
, pp. 1739-1740
-
-
Liberzon, A.1
Subramanian, A.2
Pinchback, R.3
Thorvaldsdóttir, H.4
Tamayo, P.5
Mesirov, J.P.6
-
43
-
-
85016161935
-
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)
-
MacArthur, J., Bowler, E., Cerezo, M., Gil, L., Hall, P., Hastings, E., Junkins, H., McMahon, A., Milano, A., Morales, J., et al. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Res. 45 (2017), D896–D901.
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D896-D901
-
-
MacArthur, J.1
Bowler, E.2
Cerezo, M.3
Gil, L.4
Hall, P.5
Hastings, E.6
Junkins, H.7
McMahon, A.8
Milano, A.9
Morales, J.10
-
44
-
-
58149177166
-
Reactome knowledgebase of human biological pathways and processes
-
Matthews, L., Gopinath, G., Gillespie, M., Caudy, M., Croft, D., de Bono, B., Garapati, P., Hemish, J., Hermjakob, H., Jassal, B., et al. Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. 37 (2009), D619–D622.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D619-D622
-
-
Matthews, L.1
Gopinath, G.2
Gillespie, M.3
Caudy, M.4
Croft, D.5
de Bono, B.6
Garapati, P.7
Hemish, J.8
Hermjakob, H.9
Jassal, B.10
-
45
-
-
33644877439
-
Human protein reference database—2006 update
-
Mishra, G.R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., Shivakumar, K., Anuradha, N., Reddy, R., Raghavan, T.M., et al. Human protein reference database—2006 update. Nucleic Acids Res. 34 (2006), D411–D414.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D411-D414
-
-
Mishra, G.R.1
Suresh, M.2
Kumaran, K.3
Kannabiran, N.4
Suresh, S.5
Bala, P.6
Shivakumar, K.7
Anuradha, N.8
Reddy, R.9
Raghavan, T.M.10
-
46
-
-
47549107689
-
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
-
Mostafavi, S., Ray, D., Warde-Farley, D., Grouios, C., Morris, Q., GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol., 9(Suppl 1), 2008, S4.
-
(2008)
Genome Biol.
, vol.9
, pp. S4
-
-
Mostafavi, S.1
Ray, D.2
Warde-Farley, D.3
Grouios, C.4
Morris, Q.5
-
47
-
-
84893041011
-
Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders
-
Novarino, G., Fenstermaker, A.G., Zaki, M.S., Hofree, M., Silhavy, J.L., Heiberg, A.D., Abdellateef, M., Rosti, B., Scott, E., Mansour, L., et al. Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders. Science 343 (2014), 506–511.
-
(2014)
Science
, vol.343
, pp. 506-511
-
-
Novarino, G.1
Fenstermaker, A.G.2
Zaki, M.S.3
Hofree, M.4
Silhavy, J.L.5
Heiberg, A.D.6
Abdellateef, M.7
Rosti, B.8
Scott, E.9
Mansour, L.10
-
48
-
-
84891799734
-
The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
-
Orchard, S., Ammari, M., Aranda, B., Breuza, L., Briganti, L., Broackes-Carter, F., Campbell, N.H., Chavali, G., Chen, C., del-Toro, N., et al. The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res. 42 (2014), D358–D363.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D358-D363
-
-
Orchard, S.1
Ammari, M.2
Aranda, B.3
Breuza, L.4
Briganti, L.5
Broackes-Carter, F.6
Campbell, N.H.7
Chavali, G.8
Chen, C.9
del-Toro, N.10
-
49
-
-
84884403849
-
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE)
-
Paull, E.O., Carlin, D.E., Niepel, M., Sorger, P.K., Haussler, D., Stuart, J.M., Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE). Bioinformatics 29 (2013), 2757–2764.
-
(2013)
Bioinformatics
, vol.29
, pp. 2757-2764
-
-
Paull, E.O.1
Carlin, D.E.2
Niepel, M.3
Sorger, P.K.4
Haussler, D.5
Stuart, J.M.6
-
50
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
Peri, S., Navarro, J.D., Amanchy, R., Kristiansen, T.Z., Jonnalagadda, C.K., Surendranath, V., Niranjan, V., Muthusamy, B., Gandhi, T.K.B., Gronborg, M., et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res. 13 (2003), 2363–2371.
-
(2003)
Genome Res.
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
Surendranath, V.6
Niranjan, V.7
Muthusamy, B.8
Gandhi, T.K.B.9
Gronborg, M.10
-
51
-
-
9144236198
-
Human protein reference database as a discovery resource for proteomics
-
Peri, S., Navarro, J.D., Kristiansen, T.Z., Amanchy, R., Surendranath, V., Muthusamy, B., Gandhi, T.K.B., Chandrika, K.N., Deshpande, N., Suresh, S., et al. Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 32 (2004), D497–D501.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D497-D501
-
-
Peri, S.1
Navarro, J.D.2
Kristiansen, T.Z.3
Amanchy, R.4
Surendranath, V.5
Muthusamy, B.6
Gandhi, T.K.B.7
Chandrika, K.N.8
Deshpande, N.9
Suresh, S.10
-
52
-
-
85011591571
-
NDEx: a community resource for sharing and publishing of biological networks
-
Pillich, R.T., Chen, J., Rynkov, V., Welker, D., Pratt, D., NDEx: a community resource for sharing and publishing of biological networks. Methods Mol. Biol. 1558 (2017), 271–301.
-
(2017)
Methods Mol. Biol.
, vol.1558
, pp. 271-301
-
-
Pillich, R.T.1
Chen, J.2
Rynkov, V.3
Welker, D.4
Pratt, D.5
-
53
-
-
84939221315
-
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes
-
Piñero, J., Queralt-Rosinach, N., Bravo, À., Deu-Pons, J., Bauer-Mehren, A., Baron, M., Sanz, F., Furlong, L.I., DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes. Database, 2015, 2015, bav028.
-
(2015)
Database
, vol.2015
, pp. bav028
-
-
Piñero, J.1
Queralt-Rosinach, N.2
Bravo, À.3
Deu-Pons, J.4
Bauer-Mehren, A.5
Baron, M.6
Sanz, F.7
Furlong, L.I.8
-
54
-
-
85016126262
-
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
-
Piñero, J., Bravo, À., Queralt-Rosinach, N., Gutiérrez-Sacristán, A., Deu-Pons, J., Centeno, E., García-García, J., Sanz, F., Furlong, L.I., DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants. Nucleic Acids Res. 45:D1 (2016), D833–D839.
-
(2016)
Nucleic Acids Res.
, vol.45
, Issue.D1
, pp. D833-D839
-
-
Piñero, J.1
Bravo, À.2
Queralt-Rosinach, N.3
Gutiérrez-Sacristán, A.4
Deu-Pons, J.5
Centeno, E.6
García-García, J.7
Sanz, F.8
Furlong, L.I.9
-
55
-
-
58149193222
-
Human protein reference database—2009 update
-
Prasad, T.S.K., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A., et al. Human protein reference database—2009 update. Nucleic Acids Res. 37 (2009), D767–D772.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D767-D772
-
-
Prasad, T.S.K.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
-
56
-
-
84951102783
-
NDEx, the network data Exchange
-
Pratt, D., Chen, J., Welker, D., Rivas, R., Pillich, R., Rynkov, V., Ono, K., Miello, C., Hicks, L., Szalma, S., et al. NDEx, the network data Exchange. Cell Syst. 1 (2015), 302–305.
-
(2015)
Cell Syst.
, vol.1
, pp. 302-305
-
-
Pratt, D.1
Chen, J.2
Welker, D.3
Rivas, R.4
Pillich, R.5
Rynkov, V.6
Ono, K.7
Miello, C.8
Hicks, L.9
Szalma, S.10
-
57
-
-
84910115375
-
Identifying disease associated genes by network propagation
-
Qian, Y., Besenbacher, S., Mailund, T., Schierup, M.H., Identifying disease associated genes by network propagation. BMC Syst. Biol., 8(Suppl 1), 2014, S6.
-
(2014)
BMC Syst. Biol.
, vol.8
, pp. S6
-
-
Qian, Y.1
Besenbacher, S.2
Mailund, T.3
Schierup, M.H.4
-
58
-
-
54949127160
-
iRefIndex: a consolidated protein interaction database with provenance
-
Razick, S., Magklaras, G., Donaldson, I.M., iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinformatics, 9, 2008, 405.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 405
-
-
Razick, S.1
Magklaras, G.2
Donaldson, I.M.3
-
59
-
-
84911474471
-
A proteome-scale map of the human interactome network
-
Rolland, T., Taşan, M., Charloteaux, B., Pevzner, S.J., Zhong, Q., Sahni, N., Yi, S., Lemmens, I., Fontanillo, C., Mosca, R., et al. A proteome-scale map of the human interactome network. Cell 159 (2014), 1212–1226.
-
(2014)
Cell
, vol.159
, pp. 1212-1226
-
-
Rolland, T.1
Taşan, M.2
Charloteaux, B.3
Pevzner, S.J.4
Zhong, Q.5
Sahni, N.6
Yi, S.7
Lemmens, I.8
Fontanillo, C.9
Mosca, R.10
-
60
-
-
84885933908
-
Alternatives to the median absolute deviation
-
Rousseeuw, P.J., Croux, C., Alternatives to the median absolute deviation. J. Am. Stat. Assoc. 88 (1993), 1273–1283.
-
(1993)
J. Am. Stat. Assoc.
, vol.88
, pp. 1273-1283
-
-
Rousseeuw, P.J.1
Croux, C.2
-
61
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski, L., Miller, C.S., Smith, A.J., Pettit, F.K., Bowie, J.U., Eisenberg, D., The database of interacting proteins: 2004 update. Nucleic Acids Res. 32 (2004), D449–D451.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D449-D451
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
62
-
-
58149186477
-
PID: the pathway interaction database
-
Schaefer, C.F., Anthony, K., Krupa, S., Buchoff, J., Day, M., Hannay, T., Buetow, K.H., PID: the pathway interaction database. Nucleic Acids Res. 37 (2009), D674–D679.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D674-D679
-
-
Schaefer, C.F.1
Anthony, K.2
Krupa, S.3
Buchoff, J.4
Day, M.5
Hannay, T.6
Buetow, K.H.7
-
63
-
-
84866451908
-
-
Statsmodels: econometric and statistical modeling with python. In Proceedings of the 9th Python in Science Conference
-
Seabold, S., and Perktold, J. (2010). Statsmodels: econometric and statistical modeling with python. In Proceedings of the 9th Python in Science Conference, p. 61.
-
(2010)
, pp. 61
-
-
Seabold, S.1
Perktold, J.2
-
64
-
-
0034666108
-
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
-
Snel, B., Lehmann, G., Bork, P., Huynen, M.A., STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res. 28 (2000), 3442–3444.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3442-3444
-
-
Snel, B.1
Lehmann, G.2
Bork, P.3
Huynen, M.A.4
-
65
-
-
84962094645
-
Pathway-based genomics prediction using generalized elastic net
-
Sokolov, A., Carlin, D.E., Paull, E.O., Baertsch, R., Stuart, J.M., Pathway-based genomics prediction using generalized elastic net. PLoS Comput. Biol., 12, 2016, e1004790.
-
(2016)
PLoS Comput. Biol.
, vol.12
, pp. e1004790
-
-
Sokolov, A.1
Carlin, D.E.2
Paull, E.O.3
Baertsch, R.4
Stuart, J.M.5
-
66
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
Stark, C., Breitkreutz, B.J., Reguly, T., Boucher, L., Breitkreutz, A., Tyers, M., BioGRID: a general repository for interaction datasets. Nucleic Acids Res. 34 (2006), D535–D539.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D535-D539
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
67
-
-
78651328883
-
The BioGRID interaction database: 2011 update
-
Stark, C., Breitkreutz, B.J., Chatr-Aryamontri, A., Boucher, L., Oughtred, R., Livstone, M.S., Nixon, J., Van Auken, K., Wang, X., Shi, X., et al. The BioGRID interaction database: 2011 update. Nucleic Acids Res. 39 (2011), D698–D704.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D698-D704
-
-
Stark, C.1
Breitkreutz, B.J.2
Chatr-Aryamontri, A.3
Boucher, L.4
Oughtred, R.5
Livstone, M.S.6
Nixon, J.7
Van Auken, K.8
Wang, X.9
Shi, X.10
-
68
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T., Stark, M., Muller, J., Bork, P., et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39 (2011), D561–D568.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D561-D568
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
-
69
-
-
84941051170
-
STRING v10: protein–protein interaction networks, integrated over the tree of life
-
Szklarczyk, D., Franceschini, A., Wyder, S., Forslund, K., Heller, D., Huerte-Cepas, J., Simonovic, M., Roth, A., Santos, A., Tsafou, K.P., et al. STRING v10: protein–protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 43:Database issue (2015), D447–D452.
-
(2015)
Nucleic Acids Res.
, vol.43
, Issue.Database issue
, pp. D447-D452
-
-
Szklarczyk, D.1
Franceschini, A.2
Wyder, S.3
Forslund, K.4
Heller, D.5
Huerte-Cepas, J.6
Simonovic, M.7
Roth, A.8
Santos, A.9
Tsafou, K.P.10
-
70
-
-
85021857514
-
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible
-
Szklarczyk, D., Morris, J.H., Cook, H., Kuhn, M., Wyder, S., Simonovic, M., Santos, A., Doncheva, N.T., Roth, A., Bork, P., et al. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res. 45:D1 (2017), D362–D368.
-
(2017)
Nucleic Acids Res.
, vol.45
, Issue.D1
, pp. D362-D368
-
-
Szklarczyk, D.1
Morris, J.H.2
Cook, H.3
Kuhn, M.4
Wyder, S.5
Simonovic, M.6
Santos, A.7
Doncheva, N.T.8
Roth, A.9
Bork, P.10
-
71
-
-
0036255811
-
Candidate-gene approaches for studying complex genetic traits: practical considerations
-
Tabor, H.K., Risch, N.J., Myers, R.M., Candidate-gene approaches for studying complex genetic traits: practical considerations. Nat. Rev. Genet. 3 (2002), 391–397.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 391-397
-
-
Tabor, H.K.1
Risch, N.J.2
Myers, R.M.3
-
72
-
-
79952052352
-
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence
-
Turner, B., Razick, S., Turinsky, A.L., Vlasblom, J., Crowdy, E.K., Cho, E., Morrison, K., Donaldson, I.M., Wodak, S.J., iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence. Database, 2010, 2010, baq023.
-
(2010)
Database
, vol.2010
, pp. baq023
-
-
Turner, B.1
Razick, S.2
Turinsky, A.L.3
Vlasblom, J.4
Crowdy, E.K.5
Cho, E.6
Morrison, K.7
Donaldson, I.M.8
Wodak, S.J.9
-
73
-
-
79952389826
-
Algorithms for detecting significantly mutated pathways in cancer
-
Vandin, F., Upfal, E., Raphael, B.J., Algorithms for detecting significantly mutated pathways in cancer. J. Comput. Biol. 18 (2011), 507–522.
-
(2011)
J. Comput. Biol.
, vol.18
, pp. 507-522
-
-
Vandin, F.1
Upfal, E.2
Raphael, B.J.3
-
74
-
-
76749134818
-
Associating genes and protein complexes with disease via network propagation
-
Vanunu, O., Magger, O., Ruppin, E., Shlomi, T., Sharan, R., Associating genes and protein complexes with disease via network propagation. PLoS Comput. Biol., 6, 2010, e1000641.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000641
-
-
Vanunu, O.1
Magger, O.2
Ruppin, E.3
Shlomi, T.4
Sharan, R.5
-
75
-
-
77954195272
-
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM
-
Vaske, C.J., Benz, S.C., Sanborn, J.Z., Earl, D., Szeto, C., Zhu, J., Haussler, D., Stuart, J.M., Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. Bioinformatics 26 (2010), i237–i245.
-
(2010)
Bioinformatics
, vol.26
, pp. i237-i245
-
-
Vaske, C.J.1
Benz, S.C.2
Sanborn, J.Z.3
Earl, D.4
Szeto, C.5
Zhu, J.6
Haussler, D.7
Stuart, J.M.8
-
76
-
-
34250191844
-
Reactome: a knowledge base of biologic pathways and processes
-
Vastrik, I., D'Eustachio, P., Schmidt, E., Joshi-Tope, G., Gopinath, G., Croft, D., de Bono, B., Gillespie, M., Jassal, B., Lewis, S., et al. Reactome: a knowledge base of biologic pathways and processes. Genome Biol., 8, 2007, R39.
-
(2007)
Genome Biol.
, vol.8
, pp. R39
-
-
Vastrik, I.1
D'Eustachio, P.2
Schmidt, E.3
Joshi-Tope, G.4
Gopinath, G.5
Croft, D.6
de Bono, B.7
Gillespie, M.8
Jassal, B.9
Lewis, S.10
-
77
-
-
0037250152
-
STRING: a database of predicted functional associations between proteins
-
Von Mering, C., Huynen, M., Jaeggi, D., Schmidt, S., Bork, P., Snel, B., STRING: a database of predicted functional associations between proteins. Nucleic Acids Res. 31 (2003), 258–261.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 258-261
-
-
Von Mering, C.1
Huynen, M.2
Jaeggi, D.3
Schmidt, S.4
Bork, P.5
Snel, B.6
-
78
-
-
13444249988
-
STRING: known and predicted protein–protein associations, integrated and transferred across organisms
-
Von Mering, C., Jensen, L.J., Snel, B., Hooper, S.D., Krupp, M., Foglierini, M., Jouffre, N., Huynen, M.A., Bork, P., STRING: known and predicted protein–protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33 (2005), D433–D437.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. D433-D437
-
-
Von Mering, C.1
Jensen, L.J.2
Snel, B.3
Hooper, S.D.4
Krupp, M.5
Foglierini, M.6
Jouffre, N.7
Huynen, M.A.8
Bork, P.9
-
79
-
-
33846086800
-
STRING 7—recent developments in the integration and prediction of protein interactions
-
Von Mering, C., Jensen, L.J., Kuhn, M., Chaffron, S., Doerks, T., Krüger, B., Snel, B., Bork, P., STRING 7—recent developments in the integration and prediction of protein interactions. Nucleic Acids Res. 35 (2007), D358–D362.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D358-D362
-
-
Von Mering, C.1
Jensen, L.J.2
Kuhn, M.3
Chaffron, S.4
Doerks, T.5
Krüger, B.6
Snel, B.7
Bork, P.8
-
80
-
-
77954269901
-
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
-
Warde-Farley, D., Donaldson, S.L., Comes, O., Zuberi, K., Badrawi, R., Chao, P., Franz, M., Grouios, C., Kazi, F., Lopes, C.T., et al. The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res. 38 (2010), W214–W220.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W214-W220
-
-
Warde-Farley, D.1
Donaldson, S.L.2
Comes, O.3
Zuberi, K.4
Badrawi, R.5
Chao, P.6
Franz, M.7
Grouios, C.8
Kazi, F.9
Lopes, C.T.10
-
81
-
-
84889583293
-
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism
-
Willsey, A.J., Sanders, S.J., Li, M., Dong, S., Tebbenkamp, A.T., Muhle, R.A., Reilly, S.K., Lin, L., Fertuzinhos, S., Miller, J.A., et al. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell 155 (2013), 997–1007.
-
(2013)
Cell
, vol.155
, pp. 997-1007
-
-
Willsey, A.J.1
Sanders, S.J.2
Li, M.3
Dong, S.4
Tebbenkamp, A.T.5
Muhle, R.A.6
Reilly, S.K.7
Lin, L.8
Fertuzinhos, S.9
Miller, J.A.10
-
82
-
-
84876571339
-
BioGPS and MyGene.info: organizing online, gene-centric information
-
Wu, C., Macleod, I., Su, A.I., BioGPS and MyGene.info: organizing online, gene-centric information. Nucleic Acids Res. 41 (2013), D561–D565.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D561-D565
-
-
Wu, C.1
Macleod, I.2
Su, A.I.3
-
83
-
-
77952310528
-
A human functional protein interaction network and its application to cancer data analysis
-
Wu, G., Feng, X., Stein, L., A human functional protein interaction network and its application to cancer data analysis. Genome Biol., 11, 2010, R53.
-
(2010)
Genome Biol.
, vol.11
, pp. R53
-
-
Wu, G.1
Feng, X.2
Stein, L.3
-
84
-
-
0033971642
-
DIP: the database of interacting proteins
-
Xenarios, I., Rice, D.W., Salwinski, L., Baron, M.K., Marcotte, E.M., Eisenberg, D., DIP: the database of interacting proteins. Nucleic Acids Res. 28 (2000), 289–291.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 289-291
-
-
Xenarios, I.1
Rice, D.W.2
Salwinski, L.3
Baron, M.K.4
Marcotte, E.M.5
Eisenberg, D.6
-
85
-
-
0034747028
-
DIP: the database of interacting proteins: 2001 update
-
Xenarios, I., Fernandez, E., Salwinski, L., Duan, X.J., Thompson, M.J., Marcotte, E.M., Eisenberg, D., DIP: the database of interacting proteins: 2001 update. Nucleic Acids Res. 29 (2001), 239–241.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 239-241
-
-
Xenarios, I.1
Fernandez, E.2
Salwinski, L.3
Duan, X.J.4
Thompson, M.J.5
Marcotte, E.M.6
Eisenberg, D.7
-
86
-
-
0036088133
-
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
-
Xenarios, I., Salwínski, L., Duan, X.J., Higney, P., Kim, S.-M., Eisenberg, D., DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 30 (2002), 303–305.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
Salwínski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.-M.5
Eisenberg, D.6
-
87
-
-
84965081698
-
High-performance web services for querying gene and variant annotation
-
Xin, J., Mark, A., Afrasiabi, C., Tsueng, G., Juchler, M., Gopal, N., Stupp, G.S., Putman, T.E., Ainscough, B.J., Griffith, O.L., et al. High-performance web services for querying gene and variant annotation. Genome Biol., 17, 2016, 91.
-
(2016)
Genome Biol.
, vol.17
, pp. 91
-
-
Xin, J.1
Mark, A.2
Afrasiabi, C.3
Tsueng, G.4
Juchler, M.5
Gopal, N.6
Stupp, G.S.7
Putman, T.E.8
Ainscough, B.J.9
Griffith, O.L.10
-
88
-
-
84940982679
-
Human protein interaction networks across tissues and diseases
-
Yeger-Lotem, E., Sharan, R., Human protein interaction networks across tissues and diseases. Front. Genet., 6, 2015, 257.
-
(2015)
Front. Genet.
, vol.6
, pp. 257
-
-
Yeger-Lotem, E.1
Sharan, R.2
-
89
-
-
84906283433
-
Review of biological network data and its applications
-
Yu, D., Kim, M., Xiao, G., Hwang, T.H., Review of biological network data and its applications. Genomics Inform. 11 (2013), 200–210.
-
(2013)
Genomics Inform.
, vol.11
, pp. 200-210
-
-
Yu, D.1
Kim, M.2
Xiao, G.3
Hwang, T.H.4
-
90
-
-
84883575046
-
GeneMANIA prediction server 2013 update
-
Zuberi, K., Franz, M., Rodriguez, H., Montojo, J., Lopes, C.T., Bader, G.D., Morris, Q., GeneMANIA prediction server 2013 update. Nucleic Acids Res. 41 (2013), W115–W122.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. W115-W122
-
-
Zuberi, K.1
Franz, M.2
Rodriguez, H.3
Montojo, J.4
Lopes, C.T.5
Bader, G.D.6
Morris, Q.7
|