-
1
-
-
3342986584
-
Notch signaling and cancer: Emerging complexity
-
DOI 10.1016/j.semcancer.2004.04.010, PII S1044579X04000276
-
Axelson, H. 2004. Notch signaling and cancer: Emerging complexity. Semin. Cancer Biol. 14, 317-319. (Pubitemid 38993632)
-
(2004)
Seminars in Cancer Biology
, vol.14
, Issue.5
, pp. 317-319
-
-
Axelson, H.1
-
2
-
-
0035171884
-
BIND - The Biomolecular Interaction Network Database
-
Bader, G.D., Donaldson, I., Wolting, C., et al. 2001. BIND-The Biomolecular Interaction Network Database. Nucleic Acids Res. 29, 242-245. (Pubitemid 32054459)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 242-245
-
-
Bader, G.D.1
Donaldson, I.2
Wolting, C.3
Ouellette, B.F.F.4
Pawson, T.5
Hogue, C.W.V.6
-
4
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
DOI 10.1214/aos/1013699998
-
Benjamini, Y., and Yekutieli, D. 2001. The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188. (Pubitemid 33575263)
-
(2001)
Annals of Statistics
, vol.29
, Issue.4
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
5
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang, H.Y., Lee, E., Liu, Y.T., et al. 2007. Network-based classification of breast cancer metastasis. Mol. Syst. Biol. 3, 140.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
-
6
-
-
38049186509
-
The heat kernel as the pagerank of a graph
-
Chung, F. 2007. The heat kernel as the pagerank of a graph. Proc. Nat. Acad. Sci. USA 104, 19735.
-
(2007)
Proc. Nat. Acad. Sci. USA
, vol.104
, pp. 19735
-
-
Chung, F.1
-
7
-
-
3342979755
-
Notch in lung development and lung cancer
-
DOI 10.1016/j.semcancer.2004.04.015, PII S1044579X0400032X
-
Collins, B.J., Kleeberger, W., and Ball, D.W. 2004. Notch in lung development and lung cancer. Semin. Cancer Biol. 14, 357-364. (Pubitemid 38993637)
-
(2004)
Seminars in Cancer Biology
, vol.14
, Issue.5
, pp. 357-364
-
-
Collins, B.J.1
Kleeberger, W.2
Ball, D.W.3
-
8
-
-
37349068664
-
A map of human cancer signaling
-
Cui, Q., Ma, Y., Jaramillo, M., et al. 2007. A map of human cancer signaling. Mol. Syst. Biol. 3, 152.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 152
-
-
Cui, Q.1
Ma, Y.2
Jaramillo, M.3
-
9
-
-
54549094903
-
Somatic mutations affect key pathways in lung adenocarcinoma
-
Ding, L., Getz, G., Wheeler, D.A., et al. 2008. Somatic mutations affect key pathways in lung adenocarcinoma. Nature 455, 1069-1075.
-
(2008)
Nature
, vol.455
, pp. 1069-1075
-
-
Ding, L.1
Getz, G.2
Wheeler, D.A.3
-
11
-
-
77956219683
-
The dense k-subgraph problem
-
Feige, U., Kortsarz, G., and Peleg, D. 1999. The dense k-subgraph problem. Algorithmica 29, 2001.
-
(1999)
Algorithmica
, vol.29
, pp. 2001
-
-
Feige, U.1
Kortsarz, G.2
Peleg, D.3
-
12
-
-
33947101019
-
Patterns of somatic mutation in human cancer genomes
-
DOI 10.1038/nature05610, PII NATURE05610
-
Greenman, C., Stephens, P., Smith, R., et al. 2007. Patterns of somatic mutation in human cancer genomes. Nature 446, 153-158. (Pubitemid 46398669)
-
(2007)
Nature
, vol.446
, Issue.7132
, pp. 153-158
-
-
Greenman, C.1
Stephens, P.2
Smith, R.3
Dalgliesh, G.L.4
Hunter, C.5
Bignell, G.6
Davies, H.7
Teague, J.8
Butler, A.9
Stevens, C.10
Edkins, S.11
O'Meara, S.12
Vastrik, I.13
Schmidt, E.E.14
Avis, T.15
Barthorpe, S.16
Bhamra, G.17
Buck, G.18
Choudhury, B.19
Clements, J.20
Cole, J.21
Dicks, E.22
Forbes, S.23
Gray, K.24
Halliday, K.25
Harrison, R.26
Hills, K.27
Hinton, J.28
Jenkinson, A.29
Jones, D.30
Menzies, A.31
Mironenko, T.32
Perry, J.33
Raine, K.34
Richardson, D.35
Shepherd, R.36
Small, A.37
Tofts, C.38
Varian, J.39
Webb, T.40
West, S.41
Widaa, S.42
Yates, A.43
Cahill, D.P.44
Louis, D.N.45
Goldstraw, P.46
Nicholson, A.G.47
Brasseur, F.48
Looijenga, L.49
Weber, B.L.50
Chiew, Y.-E.51
DeFazio, A.52
Greaves, M.F.53
Green, A.R.54
Campbell, P.55
Birney, E.56
Easton, D.F.57
Chenevix-Trench, G.58
Tan, M.-H.59
Khoo, S.K.60
Teh, B.T.61
Yuen, S.T.62
Leung, S.Y.63
Wooster, R.64
Futreal, P.A.65
Stratton, M.R.66
more..
-
13
-
-
0036561908
-
Modelling the molecular circuitry of cancer
-
Hahn, W.C., and Weinberg, R.A. 2002. Modelling the molecular circuitry of cancer. Nat. Rev. Cancer 2, 331-341. (Pubitemid 37328946)
-
(2002)
Nature Reviews Cancer
, vol.2
, Issue.5
, pp. 331-341
-
-
Hahn, W.C.1
Weinberg, R.A.2
-
14
-
-
78650263469
-
Evaluating between-pathway models with expression data
-
Hescott, B.J., Leiserson, M.D.M., Cowen, L., et al. 2009. Evaluating between-pathway models with expression data. Proc. RECOMB 2009 372-385.
-
(2009)
Proc. RECOMB
, vol.2009
, pp. 372-385
-
-
Hescott, B.J.1
Leiserson, M.D.M.2
Cowen, L.3
-
16
-
-
36549021060
-
Genome-wide in situ exon capture for selective resequencing
-
DOI 10.1038/ng.2007.42, PII NG200742
-
Hodges, E., Xuan, Z. Balija, V., et al. 2007. Genome-wide in situ exon capture for selective resequencing. Nat. Genet. 39, 1522-1527. (Pubitemid 350191350)
-
(2007)
Nature Genetics
, vol.39
, Issue.12
, pp. 1522-1527
-
-
Hodges, E.1
Xuan, Z.2
Balija, V.3
Kramer, M.4
Molla, M.N.5
Smith, S.W.6
Middle, C.M.7
Rodesch, M.J.8
Albert, T.J.9
Hannon, G.J.10
McCombie, W.R.11
-
17
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
Ideker, T., Ozier, O., Schwikowski, B., et al. 2002 Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18, Suppl 1, S233-S240. (Pubitemid 41185658)
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Ideker, T.1
Ozier, O.2
Schwikowski, B.3
Siegel, A.F.4
-
18
-
-
58149193234
-
STRING 8 - A global view on proteins and their functional interactions in 630 organisms
-
Jensen, L.J., Kuhn, M., Stark, M., et al. 2009. STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37, D412-D416.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
-
19
-
-
52149123619
-
Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
-
Jones, S., Zhang, X., Parsons, D.W., et al. 2008. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 321, 1801-1806.
-
(2008)
Science
, vol.321
, pp. 1801-1806
-
-
Jones, S.1
Zhang, X.2
Parsons, D.W.3
-
20
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
DOI 10.1093/bioinformatics/btl390
-
Jonsson, P.F., and Bates, P.A. 2006. Global topological features of cancer proteins in the human interactome. Bioinformatics 22, 2291-2297. (Pubitemid 44390886)
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
21
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa, M., and Goto, S. 2000. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30. (Pubitemid 30047706)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
22
-
-
59649125020
-
A network-based method for predicting disease-causing genes
-
Karni, S., Soreq, H., and Sharan, R. 2009. A network-based method for predicting disease-causing genes. J. Comput. Biol. 16, 181-189.
-
(2009)
J. Comput. Biol.
, vol.16
, pp. 181-189
-
-
Karni, S.1
Soreq, H.2
Sharan, R.3
-
23
-
-
58149193222
-
Human protein reference database-2009 update
-
Keshava Prasad, T.S., Goel, R., Kandasamy, K., et al. 2009. Human Protein Reference Database-2009 update. Nucleic Acids Res. 37, D767-D772.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
-
24
-
-
70350662979
-
An efficient rigorous approach for identifying statistically significant frequent itemsets
-
Kirsch, A., Mitzenmacher, M., Pietracaprina, A., et al. 2009. An efficient rigorous approach for identifying statistically significant frequent itemsets. PODS 117-126.
-
(2009)
PODS
, pp. 117-126
-
-
Kirsch, A.1
Mitzenmacher, M.2
Pietracaprina, A.3
-
25
-
-
0041775676
-
Diffusion kernels on graphs and other discrete structures
-
Kondor, R.I., and Lafferty, J. 2002. Diffusion kernels on graphs and other discrete structures. Proc. ICML 315-322.
-
(2002)
Proc. ICML
, pp. 315-322
-
-
Kondor, R.I.1
Lafferty, J.2
-
26
-
-
34548388340
-
A multidimensional analysis of genes mutated in breast and colorectal cancers
-
DOI 10.1101/gr.6431107
-
Lin, J., Gan, C.M., Zhang, X., et al. 2007. A multidimensional analysis of genes mutated in breast and colorectal cancers. Genome Res. 17, 1304-1318. (Pubitemid 47360905)
-
(2007)
Genome Research
, vol.17
, Issue.9
, pp. 1304-1318
-
-
Lin, J.1
Gan, C.M.2
Zhang, X.3
Jones, S.4
Sjoblom, T.5
Wood, L.D.6
Parsons, D.W.7
Papadopoulos, N.8
Kinzler, K.W.9
Vogelstein, B.10
Parmigiani, G.11
Velculescu, V.E.12
-
27
-
-
34347326247
-
Network-based analysis of affected biological processes in type 2 diabetes models
-
Liu, M., Liberzon, A., Kong., S.W., et al. 2007. Network-based analysis of affected biological processes in type 2 diabetes models. PLoS Genet. 3, e96.
-
(2007)
PLoS Genet.
, vol.3
-
-
Liu, M.1
Liberzon, A.2
Kong., S.W.3
-
28
-
-
43449138964
-
-
Combinatorics. Paul Erdös Is Eighty (Volume 2)
-
Lovász, L. 1993. Random walks on graphs: A survey, 1-46. Combinatorics. Paul Erdös Is Eighty (Volume 2).
-
(1993)
Random Walks on Graphs: A Survey
, pp. 1-46
-
-
Lovász, L.1
-
29
-
-
33846700890
-
CGI: A new approach for prioritizing genes by combining gene expression and protein-protein interaction data
-
DOI 10.1093/bioinformatics/btl569
-
Ma, X., Lee, H., Wang, L., et al. 2007. CGI: A new approach for prioritizing genes by combining gene expression and protein-protein interaction data. Bioinformatics 23, 215-221. (Pubitemid 46189612)
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 215-221
-
-
Ma, X.1
Lee, H.2
Wang, L.3
Sun, F.4
-
30
-
-
0033435103
-
Signalling networks that cause cancer
-
McCormick, F. 1999. Signalling networks that cause cancer. Trends Cell Biol. 9, M53-M56.
-
(1999)
Trends Cell Biol.
, vol.9
-
-
McCormick, F.1
-
31
-
-
29144442904
-
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
-
DOI 10.1093/bioinformatics/bti1054
-
Nabieva, E., Jim, K., Agarwal, A., et al. 2005. Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinformatics 21, Suppl 1, i302-i310. (Pubitemid 41794502)
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Nabieva, E.1
Jim, K.2
Agarwal, A.3
Chazelle, B.4
Singh, M.5
-
32
-
-
34248593385
-
Gene expression network analysis and applications to immunology
-
DOI 10.1093/bioinformatics/btm019
-
Nacu, S., Critchley-Thorne, R., Lee, P., et al. 2007. Gene expression network analysis and applications to immunology. Bioinformatics 23, 850-858. (Pubitemid 47049919)
-
(2007)
Bioinformatics
, vol.23
, Issue.7
, pp. 850-858
-
-
Nacu, S.1
Critchley-Thorne, R.2
Lee, P.3
Holmes, S.4
-
33
-
-
52949127312
-
An integrated genomic analysis of human glioblastoma multiforme
-
Parsons, D.W., Jones, S., Zhang, X., et al. 2008. An integrated genomic analysis of human glioblastoma multiforme. Science 321, 1807-1812.
-
(2008)
Science
, vol.321
, pp. 1807-1812
-
-
Parsons, D.W.1
Jones, S.2
Zhang, X.3
-
34
-
-
57149103917
-
Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions
-
Qi, Y., Suhail, Y., Lin, Y.Y., et al. 2008. Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions. Genome Res. 18, 1991-2004.
-
(2008)
Genome Res.
, vol.18
, pp. 1991-2004
-
-
Qi, Y.1
Suhail, Y.2
Lin, Y.Y.3
-
35
-
-
0347755535
-
The Database of Interacting Proteins: 2004 update
-
Salwinski, L., Miller, C.S., Smith, A.J., et al. 2004. The Database of Interacting Proteins: 2004 update. Nucleic Acids Res. 32, D449-D451. (Pubitemid 38081696)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
37
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
DOI 10.1126/science.1133427
-
Sjoblom, T., Jones, S. Wood, L.D., et al. 2006. The consensus coding sequences of human breast and colorectal cancers. Science 314, 268-274. (Pubitemid 44571966)
-
(2006)
Science
, vol.314
, Issue.5797
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
Mandelker, D.7
Leary, R.J.8
Ptak, J.9
Silliman, N.10
Szabo, S.11
Buckhaults, P.12
Farrell, C.13
Meeh, P.14
Markowitz, S.D.15
Willis, J.16
Dawson, D.17
Willson, J.K.V.18
Gazdar, A.F.19
Hartigan, J.20
Wu, L.21
Liu, C.22
Parmigiani, G.23
Park, B.H.24
Bachman, K.E.25
Papadopoulos, N.26
Vogelstein, B.27
Kinzler, K.W.28
Velculescu, V.E.29
more..
-
38
-
-
54549108740
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
-
TCGA (The Cancer Genome Atlas Research Network)
-
TCGA (The Cancer Genome Atlas Research Network). 2008. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455, 1061-1068.
-
(2008)
Nature
, vol.455
, pp. 1061-1068
-
-
-
39
-
-
19544368196
-
Learning kernels from biological networks by maximizing entropy
-
DOI 10.1093/bioinformatics/bth906
-
Tsuda, K., and Noble, W. S. 2004. Learning kernels from biological networks by maximizing entropy. Bioinformatics 20, Suppl 1, i326-i333. (Pubitemid 41296706)
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Tsuda, K.1
Noble, W.S.2
-
40
-
-
65449146537
-
Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles
-
Ulitsky, I., Karp, R. M., and Shamir, R. 2008. Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles. Proc. RECOMB 2008 347-359.
-
(2008)
Proc. RECOMB
, vol.2008
, pp. 347-359
-
-
Ulitsky, I.1
Karp, R.M.2
Shamir, R.3
-
41
-
-
4043181214
-
Cancer genes and the pathways they control
-
DOI 10.1038/nm1087
-
Vogelstein, B., and Kinzler, K. W. 2004. Cancer genes and the pathways they control. Nat. Med. 10, 789-799. (Pubitemid 39070849)
-
(2004)
Nature Medicine
, vol.10
, Issue.8
, pp. 789-799
-
-
Vogelstein, B.1
Kinzler, K.W.2
-
42
-
-
36248962105
-
The genomic landscapes of human breast and colorectal cancers
-
DOI 10.1126/science.1145720
-
Wood, L.D., Parsons, D.W., Jones, S., et al. 2007. The genomic landscapes of human breast and colorectal cancers. Science 318, 1108-1113. (Pubitemid 350134889)
-
(2007)
Science
, vol.318
, Issue.5853
, pp. 1108-1113
-
-
Wood, L.D.1
Parsons, D.W.2
Jones, S.3
Lin, J.4
Sjoblom, T.5
Leary, R.J.6
Shen, D.7
Boca, S.M.8
Barber, T.9
Ptak, J.10
Silliman, N.11
Szabo, S.12
Dezso, Z.13
Ustyanksky, V.14
Nikolskaya, T.15
Nikolsky, Y.16
Karchin, R.17
Wilson, P.A.18
Kaminker, J.S.19
Zhang, Z.20
Croshaw, R.21
Willis, J.22
Dawson, D.23
Shipitsin, M.24
Willson, J.K.V.25
Sukumar, S.26
Polyak, K.27
Ben, H.P.28
Pethiyagoda, C.L.29
Pant, P.V.K.30
Ballinger, D.G.31
Sparks, A.B.32
Hartigan, J.33
Smith, D.R.34
Suh, E.35
Papadopoulos, N.36
Buckhaults, P.37
Markowitz, S.D.38
Parmigiani, G.39
Kinzler, K.W.40
Velculescu, V.E.41
Vogelstein, B.42
more..
|