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Volumn 8, Issue 1, 2014, Pages

Identifying disease associated genes by network propagation

Author keywords

Genome wide association analysis; Network analysis; Network propagation

Indexed keywords

INTERLEUKIN 12;

EID: 84910115375     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-8-S1-S6     Document Type: Article
Times cited : (25)

References (28)
  • 2
    • 79751474481 scopus 로고    scopus 로고
    • Pathway-based analysis of GWAS datasets: effective but caution required
    • Jia P, Wang L, Meltzer HY, Zhao Z: Pathway-based analysis of GWAS datasets: effective but caution required. The International Journal of Neuropsychopharmacology. 2010, 14 (04): 567-572. [ http://www.journals.cambridge.org/abstract_S1461145710001446 ]
    • (2010) The International Journal of Neuropsychopharmacology , vol.14 , Issue.4 , pp. 567-572
    • Jia, P.1    Wang, L.2    Meltzer, H.Y.3    Zhao, Z.4
  • 3
    • 84861123691 scopus 로고    scopus 로고
    • Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges
    • Khatri P, Sirota M, Butte AJ: Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. PLoS Computational Biology. 2012, 8 (2): e1002375-10.1371/journal.pcbi.1002375. [ http://dx.plos.org/10.1371/journal.pcbi.1002375 ] 10.1371/journal.pcbi.1002375
    • (2012) PLoS Computational Biology , vol.8 , Issue.2 , pp. e1002375
    • Khatri, P.1    Sirota, M.2    Butte, A.J.3
  • 6
    • 79953106159 scopus 로고    scopus 로고
    • Appearance frequency modulated gene set enrichment testing
    • Ma J, Sartor Ma, Jagadish HV: Appearance frequency modulated gene set enrichment testing. BMC bioinformatics. 2011, 12: 81-10.1186/1471-2105-12-81. [ http://www.ncbi.nlm.nih.gov/pubmed/21418606 ] 10.1186/1471-2105-12-81
    • (2011) BMC bioinformatics , vol.12 , pp. 81
    • Ma, J.1    Sartor, M.2    Jagadish, H.V.3
  • 7
    • 84862275365 scopus 로고    scopus 로고
    • Downweighting overlapping genes improves gene set analysis
    • Tarca AL, Draghici S, Bhatti G, Romero R: Downweighting overlapping genes improves gene set analysis. BMC bioinformatics. 2012, 13: 136-10.1186/1471-2105-13-136. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3443069#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1186/1471-2105-13-136
    • (2012) BMC bioinformatics , vol.13 , pp. 136
    • Tarca, A.L.1    Draghici, S.2    Bhatti, G.3    Romero, R.4
  • 8
    • 41949118715 scopus 로고    scopus 로고
    • Network properties of genes harboring inherited disease mutations
    • Feldman I, Rzhetsky A, Vitkup D: Network properties of genes harboring inherited disease mutations. Proceedings of the National Academy of Sciences of the United States of America. 2008, 105 (11): 4323-4328. 10.1073/pnas.0701722105. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2393821#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1073/pnas.0701722105
    • (2008) Proceedings of the National Academy of Sciences of the United States of America , vol.105 , Issue.11 , pp. 4323-4328
    • Feldman, I.1    Rzhetsky, A.2    Vitkup, D.3
  • 9
    • 78650373804 scopus 로고    scopus 로고
    • Network medicine: a network-based approach to human disease
    • Barabási AL, Gulbahce N, Loscalzo J: Network medicine: a network-based approach to human disease. Nature reviews Genetics. 2011, 12: 56-68. 10.1038/nrg2918. [ http://www.ncbi.nlm.nih.gov/pubmed/21164525 ] 10.1038/nrg2918
    • (2011) Nature reviews Genetics , vol.12 , pp. 56-68
    • Barabási, A.L.1    Gulbahce, N.2    Loscalzo, J.3
  • 10
    • 79952198635 scopus 로고    scopus 로고
    • Broker genes in human disease
    • Cai JJ, Borenstein E, Petrov Da: Broker genes in human disease. Genome biology and evolution. 2010, 2: 815-25. 10.1093/gbe/evq064. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2988523#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1093/gbe/evq064
    • (2010) Genome biology and evolution , vol.2 , pp. 815-825
    • Cai, J.J.1    Borenstein, E.2    Petrov, D.3
  • 11
    • 84864590971 scopus 로고    scopus 로고
    • Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia
    • Jia P, Wang L, Fanous AH, Pato CN, Edwards TL, Zhao Z: Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia. PLoS computational biology. 2012, 8 (7): e1002587-10.1371/journal.pcbi.1002587. [ http://www.ncbi.nlm.nih.gov/pubmed/22792057 ] 10.1371/journal.pcbi.1002587
    • (2012) PLoS computational biology , vol.8 , Issue.7 , pp. e1002587
    • Jia, P.1    Wang, L.2    Fanous, A.H.3    Pato, C.N.4    Edwards, T.L.5    Zhao, Z.6
  • 13
    • 76749134818 scopus 로고    scopus 로고
    • Associating genes and protein complexes with disease via network propagation
    • Vanunu O, Magger O, Ruppin E, Shlomi T, Sharan R: Associating genes and protein complexes with disease via network propagation. plos computational biology. 2010, 6: e1000641-10.1371/journal.pcbi.1000641. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2797085#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1371/journal.pcbi.1000641
    • (2010) plos computational biology , vol.6 , pp. e1000641
    • Vanunu, O.1    Magger, O.2    Ruppin, E.3    Shlomi, T.4    Sharan, R.5
  • 14
    • 79959898376 scopus 로고    scopus 로고
    • Prioritizing candidate disease genes by networkbased boosting of genome-wide association data
    • Lee I, Blom UM, Wang PI, Shim JE, Marcotte EM: Prioritizing candidate disease genes by networkbased boosting of genome-wide association data. Genome research. 2011, 21 (7): 1109-21. 10.1101/gr.118992.110. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3129253#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1101/gr.118992.110
    • (2011) Genome research , vol.21 , Issue.7 , pp. 1109-1121
    • Lee, I.1    Blom, U.M.2    Wang, P.I.3    Shim, J.E.4    Marcotte, E.M.5
  • 15
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • WTCCC: Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature. 2007, 447 (7145): 661-78. 10.1038/nature05911. [ http://www.ncbi.nlm.nih.gov/pubmed/17554300 ] 10.1038/nature05911
    • (2007) Nature , vol.447 , Issue.7145 , pp. 661-678
  • 16
  • 17
    • 51749119425 scopus 로고    scopus 로고
    • Analysis of multiple SNPs in a candidate gene or region
    • Chapman J, Whittaker J: Analysis of multiple SNPs in a candidate gene or region. Genetic Epidemiology. 2009, 32 (6): 560-566.
    • (2009) Genetic Epidemiology , vol.32 , Issue.6 , pp. 560-566
    • Chapman, J.1    Whittaker, J.2
  • 18
    • 78649701338 scopus 로고    scopus 로고
    • Surfing a genetic association interaction network to identify modulators of antibody response to smallpox vaccine
    • Davis Na, Crowe JE, Pajewski NM, McKinney Ba: Surfing a genetic association interaction network to identify modulators of antibody response to smallpox vaccine. Genes and immunity. 2010, 11 (8): 630-636. 10.1038/gene.2010.37. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3001955#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1038/gene.2010.37
    • (2010) Genes and immunity , vol.11 , Issue.8 , pp. 630-636
    • Davis, N.1    Crowe, J.E.2    Pajewski, N.M.3    McKinney, B.4
  • 19
    • 84862487776 scopus 로고    scopus 로고
    • Six Degrees of Epistasis: Statistical Network Models for GWAS
    • McKinney Ba, Pajewski NM: Six Degrees of Epistasis: Statistical Network Models for GWAS. Frontiers in genetics. 2011, 2 (January): 109-[ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3261632#x0026;tool=pmcentrez#x0026;rendertype=abstract ]
    • (2011) Frontiers in genetics , vol.2 , Issue.JANUARY , pp. 109
    • McKinney, B.1    Pajewski, N.M.2
  • 21
    • 0036630603 scopus 로고    scopus 로고
    • Areas beneath the relative operating characteristics (ROC) and relative operating levels (ROL) curves: Statistical signi cance and interpretation
    • Graham NE: Areas beneath the relative operating characteristics (ROC) and relative operating levels (ROL) curves: Statistical signi cance and interpretation. Quarterly Journal of the Royal Meteorological Society. 2002, 2145-2166.
    • (2002) Quarterly Journal of the Royal Meteorological Society , pp. 2145-2166
    • Graham, N.E.1
  • 23
    • 77951210494 scopus 로고    scopus 로고
    • Pathway analysis of GWAS provides new insights into genetic susceptibility to 3 inflammatory diseases
    • Eleftherohorinou H, Wright V, Hoggart C, Hartikainen AL, Jarvelin MR, Balding D, Coin L, Levin M: Pathway analysis of GWAS provides new insights into genetic susceptibility to 3 inflammatory diseases. PloS one. 2009, 4 (11): e8068-10.1371/journal.pone.0008068. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2778995#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1371/journal.pone.0008068
    • (2009) PloS one , vol.4 , Issue.11 , pp. e8068
    • Eleftherohorinou, H.1    Wright, V.2    Hoggart, C.3    Hartikainen, A.L.4    Jarvelin, M.R.5    Balding, D.6    Coin, L.7    Levin, M.8
  • 24
    • 79960209969 scopus 로고    scopus 로고
    • Therapeutic targeting of the IL-12/23 pathways: generation and characterization of ustekinumab
    • Benson JM, Sachs CW, Treacy G, Zhou H, Pendley CE, Brodmerkel CM, Shankar G, Mascelli Ma: Therapeutic targeting of the IL-12/23 pathways: generation and characterization of ustekinumab. Nature biotechnology. 2011, 29 (7): 615-24. 10.1038/nbt.1903. [ http://www.ncbi.nlm.nih.gov/pubmed/21747388 ] 10.1038/nbt.1903
    • (2011) Nature biotechnology , vol.29 , Issue.7 , pp. 615-624
    • Benson, J.M.1    Sachs, C.W.2    Treacy, G.3    Zhou, H.4    Pendley, C.E.5    Brodmerkel, C.M.6    Shankar, G.7    Mascelli, M.8
  • 25
    • 78650562728 scopus 로고    scopus 로고
    • dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks
    • Oxford, England
    • Jia P, Zheng S, Long J, Zheng W, Zhao Z: dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. Bioinformatics. 2011, Oxford, England, 27: 95-102. 10.1093/bioinformatics/btq615. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3008643#x0026;tool=pmcentrez#x0026;rendertype=abstract ]
    • (2011) Bioinformatics , vol.27 , pp. 95-102
    • Jia, P.1    Zheng, S.2    Long, J.3    Zheng, W.4    Zhao, Z.5
  • 26
    • 82455199392 scopus 로고    scopus 로고
    • Collapsing-based and kernel-based single-gene analyses applied to Genetic Analysis Workshop 17 mini-exome data
    • Suppl 9
    • Li L, Zheng W, Lee JS, Zhang X, Ferguson J, Yan X, Zhao H: Collapsing-based and kernel-based single-gene analyses applied to Genetic Analysis Workshop 17 mini-exome data. BMC proceedings. 2011, 5 Suppl 9 (Suppl 9): S117-[ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3287841#x0026;tool=pmcentrez#x0026;rendertype=abstract ]
    • (2011) BMC proceedings , vol.5 , pp. S117
    • Li, L.1    Zheng, W.2    Lee, J.S.3    Zhang, X.4    Ferguson, J.5    Yan, X.6    Zhao, H.7
  • 27
    • 77951097424 scopus 로고    scopus 로고
    • Identification of type 2 diabetes-associated combination of SNPs using support vector machine
    • Ban HJ, Heo JY, Oh KS, Park KJ: Identification of type 2 diabetes-associated combination of SNPs using support vector machine. BMC genetics. 2010, 11: 26-10.1186/1471-2156-11-26. [ http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2875201#x0026;tool=pmcentrez#x0026;rendertype=abstract ] 10.1186/1471-2156-11-26
    • (2010) BMC genetics , vol.11 , pp. 26
    • Ban, H.J.1    Heo, J.Y.2    Oh, K.S.3    Park, K.J.4
  • 28
    • 0034796896 scopus 로고    scopus 로고
    • Sequence analysis using logic regression
    • Suppl 1
    • Kooperberg C, Ruczinski I, LeBlanc ML, Hsu L: Sequence analysis using logic regression. Genetic epidemiology. 2001, 21 Suppl 1 (Suppl 1): S626-31. [ http://www.ncbi.nlm.nih.gov/pubmed/11793751 ]
    • (2001) Genetic epidemiology , vol.21 , pp. S626-S631
    • Kooperberg, C.1    Ruczinski, I.2    LeBlanc, M.L.3    Hsu, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.