-
1
-
-
84869091997
-
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
-
Biankin, A.V., Waddell, N., Kassahn, K.S., Gingras, M.C., Muthuswamy, L.B., Johns, A.L., Miller, D.K., Wilson, P.J., Patch, A.M., Wu, J. et al. (2012) Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature, 491, 399-405.
-
(2012)
Nature
, vol.491
, pp. 399-405
-
-
Biankin, A.V.1
Waddell, N.2
Kassahn, K.S.3
Gingras, M.C.4
Muthuswamy, L.B.5
Johns, A.L.6
Miller, D.K.7
Wilson, P.J.8
Patch, A.M.9
Wu, J.10
-
2
-
-
83055161438
-
New gene functions in megakaryopoiesis and platelet formation
-
Gieger, C., Radhakrishnan, A., Cvejic, A., Tang, W., Porcu, E., Pistis, G., Serbanovic-Canic, J., Elling, U., Goodall, A.H., Labrune, Y. et al. (2011) New gene functions in megakaryopoiesis and platelet formation. Nature, 480, 201-208.
-
(2011)
Nature
, vol.480
, pp. 201-208
-
-
Gieger, C.1
Radhakrishnan, A.2
Cvejic, A.3
Tang, W.4
Porcu, E.5
Pistis, G.6
Serbanovic-Canic, J.7
Elling, U.8
Goodall, A.H.9
Labrune, Y.10
-
3
-
-
77952310528
-
A human functional protein interaction network and its application to cancer data analysis
-
Wu, G., Feng, X. and Stein, L. (2010) A human functional protein interaction network and its application to cancer data analysis. Genome Biol, 11, R53.
-
(2010)
Genome Biol
, vol.11
-
-
Wu, G.1
Feng, X.2
Stein, L.3
-
4
-
-
34250191844
-
Reactome: A knowledge base of biologic pathways and processes
-
Vastrik, I., D'Eustachio, P., Schmidt, E., Gopinath, G., Croft, D., de Bono, B., Gillespie, M., Jassal, B., Lewis, S., Matthews, L. et al. (2007) Reactome: a knowledge base of biologic pathways and processes. Genome Biol, 8, R39.
-
(2007)
Genome Biol
, vol.8
-
-
Vastrik, I.1
D'Eustachio, P.2
Schmidt, E.3
Gopinath, G.4
Croft, D.5
De Bono, B.6
Gillespie, M.7
Jassal, B.8
Lewis, S.9
Matthews, L.10
-
5
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular datasets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular datasets. Nucleic Acids Res, 40, D109-D114.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
6
-
-
0033168258
-
Integrated pathway-genome databases and their role in drug discovery
-
Karp, P.D., Krummenacker, M., Paley, S. and Wagg, J. (1999) Integrated pathway-genome databases and their role in drug discovery. Trends Biotechnol, 17, 275-281.
-
(1999)
Trends Biotechnol
, vol.17
, pp. 275-281
-
-
Karp, P.D.1
Krummenacker, M.2
Paley, S.3
Wagg, J.4
-
7
-
-
84860833500
-
Reorganizing the protein space at the universal protein resource (UniProt)
-
UniProt Consortium.
-
UniProt Consortium. (2012) Reorganizing the protein space at the universal protein resource (UniProt). Nucleic Acids Res, 40, D71-D75.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
-
8
-
-
84858221706
-
Ensembl 2012
-
Flicek, P., Amode, M.R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S. et al. (2012) Ensembl 2012. Nucleic Acids Res, 40, D84-D90.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
-
9
-
-
84876560358
-
The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013
-
Hastings, J., de Matos, P., Dekker, A., Ennis, M., Harsha, B., Kale, N., Muthukrishnan, V., Owen, G., Turner, S., Williams, M. et al. (2013) The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res, 41, D456-D463.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Hastings, J.1
De Matos, P.2
Dekker, A.3
Ennis, M.4
Harsha, B.5
Kale, N.6
Muthukrishnan, V.7
Owen, G.8
Turner, S.9
Williams, M.10
-
10
-
-
84862220951
-
Rhea-A manually curated resource of biochemical reactions
-
Alcantara, R., Axelsen, K.B., Morgat, A., Belda, E., Coudert, E., Bridge, A., Cao, H., de Matos, P., Ennis, M., Turner, S. et al. (2012) Rhea-A manually curated resource of biochemical reactions. Nucleic Acids Res, 40, D754-D760.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Alcantara, R.1
Axelsen, K.B.2
Morgat, A.3
Belda, E.4
Coudert, E.5
Bridge, A.6
Cao, H.7
De Matos, P.8
Ennis, M.9
Turner, S.10
-
11
-
-
84859699832
-
Disease ontology: A backbone for disease semantic integration
-
Schriml, L.M., Arze, C., Nadendla, S., Chang, Y.W., Mazaitis, M., Felix, V., Feng, G. and Kibbe, W.A. (2012) Disease ontology: a backbone for disease semantic integration. Nucleic Acids Res, 40, D940-D946.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Schriml, L.M.1
Arze, C.2
Nadendla, S.3
Chang, Y.W.4
Mazaitis, M.5
Felix, V.6
Feng, G.7
Kibbe, W.A.8
-
12
-
-
75849158230
-
The gene ontology in 2010: Extensions and refinements
-
Gene Ontology Consortium.
-
Gene Ontology Consortium. (2010) The gene ontology in 2010: extensions and refinements. Nucleic Acids Res, 38, D331-D335.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
-
13
-
-
84871602426
-
Annotating cancer variants and anti-cancer therapeutics in reactome
-
Milacic, M., Haw, R., Rothfels, K., Wu, G., Croft, D., Hermjakob, H., D'Eustachio, P. and Stein, L. (2012) Annotating cancer variants and anti-cancer therapeutics in reactome. Cancers, 4, 1180-1211.
-
(2012)
Cancers
, vol.4
, pp. 1180-1211
-
-
Milacic, M.1
Haw, R.2
Rothfels, K.3
Wu, G.4
Croft, D.5
Hermjakob, H.6
D'Eustachio, P.7
Stein, L.8
-
14
-
-
49449097859
-
The PSI-MOD community standard for representation of protein modification data
-
Montecchi-Palazzi, L., Beavis, R., Binz, P.A., Chalkley, R.J., Cottrell, J., Creasy, D., Shofstahl, J., Seymour, S.L. and Garavelli, J.S. (2008) The PSI-MOD community standard for representation of protein modification data. Nat. Biotechnol, 26, 864-866.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 864-866
-
-
Montecchi-Palazzi, L.1
Beavis, R.2
Binz, P.A.3
Chalkley, R.J.4
Cottrell, J.5
Creasy, D.6
Shofstahl, J.7
Seymour, S.L.8
Garavelli, J.S.9
-
15
-
-
78651275182
-
Reactome: A database of reactions, pathways and biological processes
-
Croft, D., O'Kelly, G., Wu, G., Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G., Jassal, B. et al. (2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res, 39, D691-D697.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Croft, D.1
O'Kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, L.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
-
16
-
-
0033954256
-
The protein data bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The protein data bank. Nucleic Acids Res, 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
17
-
-
84859487429
-
Gene expression atlas update-A value-added database of microarray and sequencing-based functional genomics experiments
-
Kapushesky, M., Adamusiak, T., Burdett, T., Culhane, A., Farne, A., Filippov, A., Holloway, E., Klebanov, A., Kryvych, N., Kurbatova, N. et al. (2012) Gene expression atlas update-A value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res, 40, D1077-D1081.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kapushesky, M.1
Adamusiak, T.2
Burdett, T.3
Culhane, A.4
Farne, A.5
Filippov, A.6
Holloway, E.7
Klebanov, A.8
Kryvych, N.9
Kurbatova, N.10
-
18
-
-
79959846617
-
PSICQUIC and PSISCORE: Accessing and scoring molecular interactions
-
Aranda, B., Blankenburg, H., Kerrien, S., Brinkman, F.S., Ceol, A., Chautard, E., Dana, J.M., De Las Rivas, J., Dumousseau, M., Galeota, E. et al. (2011) PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat. Methods, 8, 528-529.
-
(2011)
Nat. Methods
, vol.8
, pp. 528-529
-
-
Aranda, B.1
Blankenburg, H.2
Kerrien, S.3
Brinkman, F.S.4
Ceol, A.5
Chautard, E.6
Dana, J.M.7
De Las Rivas, J.8
Dumousseau, M.9
Galeota, E.10
-
19
-
-
33846108633
-
BindingDB: A web-accessible database of experimentally determined protein-ligand binding affinities
-
Liu, T., Lin, Y., Wen, X., Jorrisen, R.N. and Gilson, M.K. (2007) BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Nucleic Acids Res, 35, D198-D201.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Liu, T.1
Lin, Y.2
Wen, X.3
Jorrisen, R.N.4
Gilson, M.K.5
-
20
-
-
78651287426
-
DrugBank 3.0: A comprehensive resource for 'omics' research on drugs
-
Knox, C., Law, V., Jewison, T., Liu, P., Ly, S., Frolkis, A., Pon, A., Banco, K., Mak, C., Neveu, V. et al. (2011) DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Res, 39, D1035-D1041.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Knox, C.1
Law, V.2
Jewison, T.3
Liu, P.4
Ly, S.5
Frolkis, A.6
Pon, A.7
Banco, K.8
Mak, C.9
Neveu, V.10
-
21
-
-
77954269901
-
The GeneMANIA prediction server: Biological network integration for gene prioritization and predicting gene function
-
Warde-Farley, D., Donaldson, S.L., Comes, O., Zuberi, K., Badrawi, R., Chao, P., Franz, M., Grouios, C., Kazi, F., Lopes, C.T. et al. (2010) The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res, 38, W214-W220.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Warde-Farley, D.1
Donaldson, S.L.2
Comes, O.3
Zuberi, K.4
Badrawi, R.5
Chao, P.6
Franz, M.7
Grouios, C.8
Kazi, F.9
Lopes, C.T.10
-
22
-
-
84862203775
-
WikiPathways: Building research communities on biological pathways
-
Kelder, T., van Iersel, M.P., Hanspers, K., Kutmon, M., Conklin, B.R., Evelo, C.T. and Pico, A.R. (2012) WikiPathways: building research communities on biological pathways. Nucleic Acids Res, 40, D1301-D1307.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kelder, T.1
Van Iersel, M.P.2
Hanspers, K.3
Kutmon, M.4
Conklin, B.R.5
Evelo, C.T.6
Pico, A.R.7
-
23
-
-
78049480691
-
GeneCards Version 3: The human gene integrator
-
Safran, M., Dalah, I., Alexander, J., Rosen, N., Iny Stein, T., Shmoish, M., Nativ, N., Bahir, I., Doniger, T., Krug, H. et al. (2010) GeneCards Version 3: the human gene integrator. Database, 2010, baq020.
-
(2010)
Database
, vol.2010
-
-
Safran, M.1
Dalah, I.2
Alexander, J.3
Rosen, N.4
Iny Stein, T.5
Shmoish, M.6
Nativ, N.7
Bahir, I.8
Doniger, T.9
Krug, H.10
-
24
-
-
77956664073
-
The BioPAX community standard for pathway data sharing
-
Demir, E., Cary, M.P., Paley, S., Fukuda, K., Lemer, C., Vastrik, I., Wu, G., D'Eustachio, P., Schaefer, C., Luciano, J. et al. (2010) The BioPAX community standard for pathway data sharing. Nat. Biotechnol, 28, 935-942.
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 935-942
-
-
Demir, E.1
Cary, M.P.2
Paley, S.3
Fukuda, K.4
Lemer, C.5
Vastrik, I.6
Wu, G.7
D'Eustachio, P.8
Schaefer, C.9
Luciano, J.10
-
25
-
-
40749162829
-
LibSBML: An API Library for SBML
-
Bornstein, B.J., Keating, S.M., Jouraku, A. and Hucka, M. (2008) LibSBML: an API Library for SBML. Bioinformatics, 24, 880-881.
-
(2008)
Bioinformatics
, vol.24
, pp. 880-881
-
-
Bornstein, B.J.1
Keating, S.M.2
Jouraku, A.3
Hucka, M.4
-
26
-
-
80155212661
-
Model storage, exchange and integration
-
Courtot, M., Juty, N., Knupfer, C., Waltemath, D., Zhukova, A., Drager, A., Dumontier, M., Finney, A., Golebiewski, M., Hastings, J. et al. (2011) Model storage, exchange and integration. Mol. Syst. Biol, 7, 543.
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 543
-
-
Courtot, M.1
Juty, N.2
Knupfer, C.3
Waltemath, D.4
Zhukova, A.5
Drager, A.6
Dumontier, M.7
Finney, A.8
Golebiewski, M.9
Hastings, J.10
-
27
-
-
78651286167
-
The protein ontology: A structured representation of protein forms and complexes
-
Natale, D.A., Arighi, C.N., Barker, W.C., Blake, J.A., Bult, C.J., Caudy, M., Drabkin, H.J., D'Eustachio, P., Evsikov, A.V., Huang, H. et al. (2011) The protein ontology: a structured representation of protein forms and complexes. Nucleic Acids Res, 39, D539-D545.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Natale, D.A.1
Arighi, C.N.2
Barker, W.C.3
Blake, J.A.4
Bult, C.J.5
Caudy, M.6
Drabkin, H.J.7
D'Eustachio, P.8
Evsikov, A.V.9
Huang, H.10
|