-
1
-
-
84947939166
-
Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa
-
Borowiec ML, Lee EK, Chiu JC, Plachetzki DC. 2015. Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa. BMC Genomics 16:987.
-
(2015)
BMC Genomics
, vol.16
, pp. 987
-
-
Borowiec, M.L.1
Lee, E.K.2
Chiu, J.C.3
Plachetzki, D.C.4
-
2
-
-
0033984609
-
Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction
-
Bruno WJ, Socci ND, Halpern AL. 2000. Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction. Mol Biol Evol. 17(1):189-197.
-
(2000)
Mol Biol Evol
, vol.17
, Issue.1
, pp. 189-197
-
-
Bruno, W.J.1
Socci, N.D.2
Halpern, A.L.3
-
3
-
-
28944449451
-
Likelihood calculation in molecular phylogenetics
-
In: Gascuel O, editor. Oxford (UK): Oxford University Press
-
Bryant D, Galtier N, Poursat M-A. 2005. Likelihood calculation in molecular phylogenetics. In: Gascuel O, editor. Mathematics of evolution and phylogeny. Oxford (UK): Oxford University Press. p. 33-62.
-
(2005)
Mathematics of Evolution and Phylogeny
, pp. 33-62
-
-
Bryant, D.1
Galtier, N.2
Poursat, M.-A.3
-
4
-
-
84946104456
-
Selecting question-specific genes to reduce incongruence in phylogenomics: A case study of jawed vertebrate backbone phylogeny
-
Chen MY, Liang D, Zhang P. 2015. Selecting question-specific genes to reduce incongruence in phylogenomics: A case study of jawed vertebrate backbone phylogeny. Syst Biol. 64(6):1104-1120.
-
(2015)
Syst Biol
, vol.64
, Issue.6
, pp. 1104-1120
-
-
Chen, M.Y.1
Liang, D.2
Zhang, P.3
-
5
-
-
84994448773
-
Terrace aware data structure for phylogenomic inference from supermatrices
-
Chernomor O, von Haeseler A, Minh BQ. 2016. Terrace aware data structure for phylogenomic inference from supermatrices. Syst Biol. 65(6): 997-1008.
-
(2016)
Syst Biol
, vol.65
, Issue.6
, pp. 997-1008
-
-
Chernomor, O.1
Von Haeseler, A.2
Minh, B.Q.3
-
6
-
-
26444523116
-
Maximum Likelihood of Evolutionary Trees Is Hard
-
In:Miyano S, Mesirov J, Kasif S, Istrail S, Pevzner PA, Waterman M, editors, Cambridge, MA, USA; 2005 May 14-18, Proceedings. Berlin, Heidelberg (Germany): Springer
-
Chor B, Tuller T. 2005. Maximum Likelihood of Evolutionary Trees Is Hard. In:Miyano S, Mesirov J, Kasif S, Istrail S, Pevzner PA, Waterman M, editors. Research in Computational Molecular Biology: 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA; 2005 May 14-18, Proceedings. Berlin, Heidelberg (Germany): Springer. p. 296-310.
-
(2005)
Research in Computational Molecular Biology: 9th Annual International Conference, RECOMB 2005
, pp. 296-310
-
-
Chor, B.1
Tuller, T.2
-
7
-
-
84946127183
-
Automation and evaluation of the SOWH Test with SOWHAT
-
Church SH, Ryan JF, Dunn CW. 2015. Automation and evaluation of the SOWH Test with SOWHAT. Syst Biol. 64(6): 1048-1058.
-
(2015)
Syst Biol
, vol.64
, Issue.6
, pp. 1048-1058
-
-
Church, S.H.1
Ryan, J.F.2
Dunn, C.W.3
-
8
-
-
0002339122
-
The number of evolutionary trees
-
Felsenstein J. 1978. The number of evolutionary trees. Syst Biol. 27(1): 27-33.
-
(1978)
Syst Biol
, vol.27
, Issue.1
, pp. 27-33
-
-
Felsenstein, J.1
-
9
-
-
0019797407
-
Evolutionary trees from DNA sequences: Amaximum likelihood approach
-
Felsenstein J. 1981. Evolutionary trees from DNA sequences: Amaximum likelihood approach. J Mol Evol 17(6): 368-376.
-
(1981)
J Mol Evol
, vol.17
, Issue.6
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
84927675233
-
The phylogenetic likelihood library
-
Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A. 2015. The phylogenetic likelihood library. Syst Biol. 64(2): 356-362.
-
(2015)
Syst Biol
, vol.64
, Issue.2
, pp. 356-362
-
-
Flouri, T.1
Izquierdo-Carrasco, F.2
Darriba, D.3
Aberer, A.J.4
Nguyen, L.T.5
Minh, B.Q.6
Von Haeseler, A.7
Stamatakis, A.8
-
12
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
Gascuel O. 1997. BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol. 14(7): 685-695.
-
(1997)
Mol Biol Evol
, vol.14
, Issue.7
, pp. 685-695
-
-
Gascuel, O.1
-
13
-
-
77950806408
-
New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol. 59(3): 307-321.
-
(2010)
Syst Biol
, vol.59
, Issue.3
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
14
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies bymaximum likelihood
-
Guindon S, Gascuel O, Rannala B. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies bymaximum likelihood. Syst Biol. 52(5): 696-704.
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
Rannala, B.3
-
16
-
-
84966929319
-
A new view of the tree of life
-
Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, et al. 2016. A new view of the tree of life. Nat Microbiol. 1:16048.
-
(2016)
Nat Microbiol
, vol.1
, pp. 16048
-
-
Hug, L.A.1
Baker, B.J.2
Anantharaman, K.3
Brown, C.T.4
Probst, A.J.5
Castelle, C.J.6
Butterfield, C.N.7
Hernsdorf, A.W.8
Amano, Y.9
Ise, K.10
-
17
-
-
84917708482
-
Whole-genome analyses resolve early branches in the tree of life of modern birds
-
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, et al. 2014. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science 346(6215): 1320-1331.
-
(2014)
Science
, vol.346
, Issue.6215
, pp. 1320-1331
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
Li, C.6
Ho, S.Y.7
Faircloth, B.C.8
Nabholz, B.9
Howard, J.T.10
-
18
-
-
84929574274
-
Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites
-
Katz LA, Grant JR. 2015. Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites. Syst Biol. 64(3): 406-415.
-
(2015)
Syst Biol
, vol.64
, Issue.3
, pp. 406-415
-
-
Katz, L.A.1
Grant, J.R.2
-
19
-
-
84931584818
-
ExaML version 3: A tool for phylogenomic analyses on supercomputers
-
Kozlov AM, Aberer AJ, Stamatakis A. 2015. ExaML version 3: A tool for phylogenomic analyses on supercomputers. Bioinformatics 31(15): 2577-2579.
-
(2015)
Bioinformatics
, vol.31
, Issue.15
, pp. 2577-2579
-
-
Kozlov, A.M.1
Aberer, A.J.2
Stamatakis, A.3
-
20
-
-
81455140612
-
RAxML and FastTree: Comparing two methods for large-scale maximum likelihood phylogeny estimation
-
Liu K, Linder CR, Warnow T. 2011. RAxML and FastTree: Comparing two methods for large-scale maximum likelihood phylogeny estimation. PLoS One 6(11): E27731.
-
(2011)
PLoS One
, vol.6
, Issue.11
, pp. e27731
-
-
Liu, K.1
Linder, C.R.2
Warnow, T.3
-
21
-
-
84949317694
-
Estimating phylogenetic trees from genome-scale data
-
Liu L, Xi Z, Wu S, Davis CC, Edwards SV. 2015. Estimating phylogenetic trees from genome-scale data. Ann N Y Acad Sci. 1360:36-53.
-
(2015)
Ann N y Acad Sci
, vol.1360
, pp. 36-53
-
-
Liu, L.1
Xi, Z.2
Wu, S.3
Davis, C.C.4
Edwards, S.V.5
-
22
-
-
78751558547
-
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
-
New Orleans (LA): Institute of Electrical and Electronics Engineers (IEEE)
-
Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE). New Orleans (LA): Institute of Electrical and Electronics Engineers (IEEE). p. 1-8.
-
(2010)
Proceedings of the Gateway Computing Environments Workshop (GCE)
, pp. 1-8
-
-
Miller, M.A.1
Pfeiffer, W.2
Schwartz, T.3
-
23
-
-
84917708481
-
Statistical binning enables an accurate coalescent-based estimation of the avian tree
-
Mirarab S, Bayzid MS, Boussau B, Warnow T. 2014. Statistical binning enables an accurate coalescent-based estimation of the avian tree. Science 346(6215):1250463.
-
(2014)
Science
, vol.346
, Issue.6215
, pp. 1250463
-
-
Mirarab, S.1
Bayzid, M.S.2
Boussau, B.3
Warnow, T.4
-
24
-
-
84931034856
-
ASTRAL-II: Coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
-
Mirarab S, Warnow T. 2015. ASTRAL-II: Coalescent-based species tree estimation with many hundreds of taxa and thousands of genes. Bioinformatics 31(12):i44-i52.
-
(2015)
Bioinformatics
, vol.31
, Issue.12
, pp. i44-i52
-
-
Mirarab, S.1
Warnow, T.2
-
25
-
-
84909606775
-
Phylogenomics resolves the timing and pattern of insect evolution
-
Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, et al. 2014. Phylogenomics resolves the timing and pattern of insect evolution. Science 346(6210):763-767.
-
(2014)
Science
, vol.346
, Issue.6210
, pp. 763-767
-
-
Misof, B.1
Liu, S.2
Meusemann, K.3
Peters, R.S.4
Donath, A.5
Mayer, C.6
Frandsen, P.B.7
Ware, J.8
Flouri, T.9
Beutel, R.G.10
-
26
-
-
84857263968
-
Characterizing the phylogenetic tree-search problem
-
Money D, Whelan S. 2012. Characterizing the phylogenetic tree-search problem. Syst Biol. 61(2):228-239.
-
(2012)
Syst Biol
, vol.61
, Issue.2
, pp. 228-239
-
-
Money, D.1
Whelan, S.2
-
27
-
-
84904613129
-
Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts
-
Nagy LG, OhmRA, Kovacs GM, Floudas D, Riley R, Gacser A, Sipiczki M, Davis JM, Doty SL, de Hoog GS, et al. 2014. Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts. Nat Commun. 5:4471.
-
(2014)
Nat Commun
, vol.5
, pp. 4471
-
-
Nagy, L.G.1
Ohm, R.A.2
Kovacs, G.M.3
Floudas, D.4
Riley, R.5
Gacser, A.6
Sipiczki, M.7
Davis, J.M.8
Doty, S.L.9
De Hoog, G.S.10
-
28
-
-
84922362345
-
IQ-TREE: A fast and effective stochastic algorithm for estimating maximumlikelihood phylogenies
-
Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: A fast and effective stochastic algorithm for estimating maximumlikelihood phylogenies. Mol Biol Evol. 32(1): 268-274.
-
(2015)
Mol Biol Evol
, vol.32
, Issue.1
, pp. 268-274
-
-
Nguyen, L.T.1
Schmidt, H.A.2
Von Haeseler, A.3
Minh, B.Q.4
-
29
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. 2010. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5(3): E9490.
-
(2010)
PLoS One
, vol.5
, Issue.3
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
30
-
-
84944911288
-
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
-
Prum RO, Berv JS, Dornburg A, Field DJ, Townsend JP, Lemmon EM, Lemmon AR. 2015. A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature 526(7574): 569-573.
-
(2015)
Nature
, vol.526
, Issue.7574
, pp. 569-573
-
-
Prum, R.O.1
Berv, J.S.2
Dornburg, A.3
Field, D.J.4
Townsend, J.P.5
Lemmon, E.M.6
Lemmon, A.R.7
-
31
-
-
0003080472
-
Comparison of labeled trees with valency three
-
Robinson DF. 1971. Comparison of labeled trees with valency three. J Comb Theory. B 11(2): 105-119.
-
(1971)
J Comb Theory. B
, vol.11
, Issue.2
, pp. 105-119
-
-
Robinson, D.F.1
-
32
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson DF, Foulds LR. 1981. Comparison of phylogenetic trees. Math Biosci. 53(1-2): 131-147.
-
(1981)
Math Biosci
, vol.53
, Issue.1-2
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
33
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A, Williams BL, King N, Carroll SB. 2003. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425(6960): 798-804.
-
(2003)
Nature
, vol.425
, Issue.6960
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
34
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 4(4): 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, Issue.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
35
-
-
84994658159
-
Fast coalescent-based computation of local branch support from quartet frequencies
-
Sayyari E, Mirarab S. 2016. Fast coalescent-based computation of local branch support from quartet frequencies. Mol Biol Evol. 33(7): 1654-1668.
-
(2016)
Mol Biol Evol
, vol.33
, Issue.7
, pp. 1654-1668
-
-
Sayyari, E.1
Mirarab, S.2
-
36
-
-
85021804124
-
Contentious relationships in phylogenomic studies can be driven by a handful of genes
-
Shen XX, Hittinger CT, Rokas A. 2017. Contentious relationships in phylogenomic studies can be driven by a handful of genes. Nat Ecol Evol. 1(5): 0126.
-
(2017)
Nat Ecol Evol
, vol.1
, Issue.5
, pp. 0126
-
-
Shen, X.X.1
Hittinger, C.T.2
Rokas, A.3
-
37
-
-
85008426692
-
A genome-scale investigation of how sequence, function, and tree-based gene properties influence phylogenetic inference
-
Shen XX, Salichos L, Rokas A. 2016a. A genome-scale investigation of how sequence, function, and tree-based gene properties influence phylogenetic inference. Genome Biol Evol. 8:2565-2580.
-
(2016)
Genome Biol Evol
, vol.8
, pp. 2565-2580
-
-
Shen, X.X.1
Salichos, L.2
Rokas, A.3
-
38
-
-
85008500372
-
Reconstructing the backbone of the saccharomycotina yeast phylogeny using genome-scale data
-
Shen XX, Zhou X, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. 2016b. Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. G3 (Bethesda) 6:3927-3939.
-
(2016)
G3 (Bethesda)
, vol.6
, pp. 3927-3939
-
-
Shen, X.X.1
Zhou, X.2
Kominek, J.3
Kurtzman, C.P.4
Hittinger, C.T.5
Rokas, A.6
-
39
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst Biol. 51(3): 492-508.
-
(2002)
Syst Biol
, vol.51
, Issue.3
, pp. 492-508
-
-
Shimodaira, H.1
-
40
-
-
84866289853
-
Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
-
Song S, Liu L, Edwards SV, Wu S. 2012. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proc Natl Acad Sci U S A. 109(37): 14942-14947.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.37
, pp. 14942-14947
-
-
Song, S.1
Liu, L.2
Edwards, S.V.3
Wu, S.4
-
41
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21): 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
42
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. 2014. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30(9): 1312-1313.
-
(2014)
Bioinformatics
, vol.30
, Issue.9
, pp. 1312-1313
-
-
Stamatakis, A.1
-
43
-
-
85005808154
-
Using RAxML to infer phylogenies
-
Stamatakis A. 2015. Using RAxML to infer phylogenies. Curr Protoc Bioinformatics. 51:6.14.1-6.14.14.
-
(2015)
Curr Protoc Bioinformatics
, vol.51
, pp. 6141-61414
-
-
Stamatakis, A.1
-
44
-
-
34548446701
-
Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM Cell
-
(Stamatakis2007 co-authors)
-
Stamatakis A, Blagojevic F, Nikolopoulos DS, Antonopoulos CD (Stamatakis2007 co-authors). 2007. Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM Cell. J VLSI Signal Process Syst Signal Image Video Technol. 48(3): 271-286.
-
(2007)
J VLSI Signal Process Syst Signal Image Video Technol
, vol.48
, Issue.3
, pp. 271-286
-
-
Stamatakis, A.1
Blagojevic, F.2
Nikolopoulos, D.S.3
Antonopoulos, C.D.4
-
45
-
-
14644397888
-
RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis A, Ludwig T, Meier H. 2005. RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21(4): 456-463.
-
(2005)
Bioinformatics
, vol.21
, Issue.4
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
46
-
-
84938741696
-
The evolution of annelids reveals two adaptive routes to the interstitial realm
-
Struck TH, Golombek A, Weigert A, Franke FA, Westheide W, Purschke G, Bleidorn C, Halanych KM. 2015. The evolution of annelids reveals two adaptive routes to the interstitial realm. Curr Biol. 25(15): 1993-1999.
-
(2015)
Curr Biol
, vol.25
, Issue.15
, pp. 1993-1999
-
-
Struck, T.H.1
Golombek, A.2
Weigert, A.3
Franke, F.A.4
Westheide, W.5
Purschke, G.6
Bleidorn, C.7
Halanych, K.M.8
-
47
-
-
0001336205
-
Phylogenetic inference
-
In: Hillis DM, Moritz C, Mable BK, editors. Sunderland (MA): Sinauer Associates
-
Swofford DL, Olsen GJ, Waddell PJ, Hillis DM. 1996. Phylogenetic inference. In: Hillis DM, Moritz C, Mable BK, editors. Molecular systematics. Sunderland (MA): Sinauer Associates. p. 407-514.
-
(1996)
Molecular Systematic
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
48
-
-
85007247334
-
The interrelationships of placental mammals and the limits of phylogenetic inference
-
Tarver JE, Dos ReisM, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, et al. 2016. The interrelationships of placental mammals and the limits of phylogenetic inference. Genome Biol Evol. 8(2): 330-344.
-
(2016)
Genome Biol Evol
, vol.8
, Issue.2
, pp. 330-344
-
-
Tarver, J.E.1
Dos Reis, M.2
Mirarab, S.3
Moran, R.J.4
Parker, S.5
O'Reilly, J.E.6
King, B.L.7
O'Connell, M.J.8
Asher, R.J.9
Warnow, T.10
-
50
-
-
84928974643
-
Error, signal, and the placement of Ctenophora sister to all other animals
-
Whelan NV, Kocot KM, Moroz LL, Halanych KM. 2015. Error, signal, and the placement of Ctenophora sister to all other animals. Proc Natl Acad Sci U S A. 112(18): 5773-5778.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, Issue.18
, pp. 5773-5778
-
-
Whelan, N.V.1
Kocot, K.M.2
Moroz, L.L.3
Halanych, K.M.4
-
52
-
-
84909619344
-
Phylotranscriptomic analysis of the origin and early diversification of land plants
-
Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, et al. 2014. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proc Natl Acad Sci U S A. 111(45): E4859-E4868.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.45
, pp. E4859-E4868
-
-
Wickett, N.J.1
Mirarab, S.2
Nguyen, N.3
Warnow, T.4
Carpenter, E.5
Matasci, N.6
Ayyampalayam, S.7
Barker, M.S.8
Burleigh, J.G.9
Gitzendanner, M.A.10
-
53
-
-
84919947905
-
Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies
-
Xi Z, Liu L, Rest JS, Davis CC. 2014. Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies. Syst Biol. 63(6): 919-932.
-
(2014)
Syst Biol
, vol.63
, Issue.6
, pp. 919-932
-
-
Xi, Z.1
Liu, L.2
Rest, J.S.3
Davis, C.C.4
-
55
-
-
84965099240
-
Dissecting molecular evolution in the highly diverse plant clade caryophyllales using transcriptome sequencing
-
Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, et al. 2015. Dissecting molecular evolution in the highly diverse plant clade caryophyllales using transcriptome sequencing. Mol Biol Evol. 32(8): 2001-2014.
-
(2015)
Mol Biol Evol
, vol.32
, Issue.8
, pp. 2001-2014
-
-
Yang, Y.1
Moore, M.J.2
Brockington, S.F.3
De, S.4
Wong, G.K.5
Carpenter, E.J.6
Zhang, Y.7
Chen, L.8
Yan, Z.9
Xie, Y.10
-
56
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximatemethods
-
Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximatemethods. J Mol Evol. 39(3): 306-314.
-
(1994)
J Mol Evol
, vol.39
, Issue.3
, pp. 306-314
-
-
Yang, Z.1
-
58
-
-
84862814389
-
Molecular phylogenetics: Principles and practice
-
Yang Z, Rannala B. 2012. Molecular phylogenetics: Principles and practice. Nat Rev Genet. 13(5): 303-314.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.5
, pp. 303-314
-
-
Yang, Z.1
Rannala, B.2
|