-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
PMID: 20124702
-
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. 2010. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallographica Section D Biological Crystallography 66:213-221. DOI: https://doi.org/10.1107/S0907444909052925, PMID: 20124702
-
(2010)
Acta Crystallographica Section D Biological Crystallography
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
2
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix refine
-
PMID: 22505256
-
Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD. 2012. Towards automated crystallographic structure refinement with phenix refine. Acta Crystallographica Section D Biological Crystallography 68:352-367. DOI: https://doi.org/10.1107/S0907444912001308, PMID: 22505256
-
(2012)
Acta Crystallographica Section D Biological Crystallography
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
Terwilliger, T.C.7
Urzhumtsev, A.8
Zwart, P.H.9
Adams, P.D.10
-
3
-
-
1842329727
-
The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins
-
PMID: 9224719
-
Barabino SM, Hübner W, Jenny A, Minvielle-Sebastia L, Keller W. 1997. The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins. Genes & Development 11:1703-1716. DOI: https://doi.org/10.1101/gad.11.13.1703, PMID: 9224719
-
(1997)
Genes & Development
, vol.11
, pp. 1703-1716
-
-
Barabino, S.M.1
Hübner, W.2
Jenny, A.3
Minvielle-Sebastia, L.4
Keller, W.5
-
4
-
-
0034679803
-
Distinct roles of two Yth1p domains in 3’-end cleavage and polyadenylation of yeast pre-mRNAs
-
PMID: 10899131
-
Barabino SM, Ohnacker M, Keller W. 2000. Distinct roles of two Yth1p domains in 3’-end cleavage and polyadenylation of yeast pre-mRNAs. The EMBO Journal 19:3778-3787. DOI: https://doi.org/10.1093/emboj/19.14.3778, PMID: 10899131
-
(2000)
The EMBO Journal
, vol.19
, pp. 3778-3787
-
-
Barabino, S.M.1
Ohnacker, M.2
Keller, W.3
-
5
-
-
0026009674
-
Purification of the cleavage and polyadenylation factor involved in the 3’-processing of messenger RNA precursors
-
PMID: 1918081
-
Bienroth S, Wahle E, Suter-Crazzolara C, Keller W. 1991. Purification of the cleavage and polyadenylation factor involved in the 3’-processing of messenger RNA precursors. The Journal of Biological Chemistry 266:19768-19776, PMID: 1918081
-
(1991)
The Journal of Biological Chemistry
, vol.266
, pp. 19768-19776
-
-
Bienroth, S.1
Wahle, E.2
Suter-Crazzolara, C.3
Keller, W.4
-
6
-
-
0034034012
-
Recruitment of a basal polyadenylation factor by the upstream sequence element of the human lamin B2 polyadenylation signal
-
PMID: 10733568
-
Brackenridge S, Proudfoot NJ. 2000. Recruitment of a basal polyadenylation factor by the upstream sequence element of the human lamin B2 polyadenylation signal. Molecular and Cellular Biology 20:2660-2669. DOI: https://doi.org/10.1128/MCB.20.8.2660-2669.2000, PMID: 10733568
-
(2000)
Molecular and Cellular Biology
, vol.20
, pp. 2660-2669
-
-
Brackenridge, S.1
Proudfoot, N.J.2
-
7
-
-
0024457824
-
Efficiency of utilization of the simian virus 40 late polyadenylation site: Effects of upstream sequences
-
PMID: 2573828
-
Carswell S, Alwine JC. 1989. Efficiency of utilization of the simian virus 40 late polyadenylation site: effects of upstream sequences. Molecular and Cellular Biology 9:4248-4258. DOI: https://doi.org/10.1128/MCB.9.10.4248, PMID: 2573828
-
(1989)
Molecular and Cellular Biology
, vol.9
, pp. 4248-4258
-
-
Carswell, S.1
Alwine, J.C.2
-
8
-
-
85032362664
-
Architecture of eukaryotic mRNA 3’-end processing machinery
-
PMID: 2 9074584
-
Casañal A, Kumar A, Hill CH, Easter AD, Emsley P, Degliesposti G, Gordiyenko Y, Santhanam B, Wolf J, Wiederhold K, Dornan GL, Skehel M, Robinson CV, Passmore LA. 2017. Architecture of eukaryotic mRNA 3’-end processing machinery. Science 358:1056-1059. DOI: https://doi.org/10.1126/science.aao6535, PMID: 2 9074584
-
(2017)
Science
, vol.358
, pp. 1056-1059
-
-
Casañal, A.1
Kumar, A.2
Hill, C.H.3
Easter, A.D.4
Emsley, P.5
Degliesposti, G.6
Gordiyenko, Y.7
Santhanam, B.8
Wolf, J.9
Wiederhold, K.10
Dornan, G.L.11
Skehel, M.12
Robinson, C.V.13
Passmore, L.A.14
-
9
-
-
84867345063
-
A cross-platform toolkit for mass spectrometry and proteomics
-
PMID: 23051804
-
Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, et al. 2012. A cross-platform toolkit for mass spectrometry and proteomics. Nature Biotechnology 30:918-920. DOI: https://doi.org/10.1038/nbt.2377, PMID: 23051804
-
(2012)
Nature Biotechnology
, vol.30
, pp. 918-920
-
-
Chambers, M.C.1
Maclean, B.2
Burke, R.3
Amodei, D.4
Ruderman, D.L.5
Neumann, S.6
Gatto, L.7
Fischer, B.8
Pratt, B.9
Egertson, J.10
Hoff, K.11
Kessner, D.12
Tasman, N.13
Shulman, N.14
Frewen, B.15
Baker, T.A.16
Brusniak, M.Y.17
Paulse, C.18
Creasy, D.19
Flashner, L.20
more..
-
10
-
-
84857761249
-
Pre-mRNA 3’-end processing complex assembly and function
-
PMID: 21957020
-
Chan S, Choi EA, Shi Y. 2011. Pre-mRNA 3’-end processing complex assembly and function. Wiley Interdisciplinary Reviews: RNA 2:321-335. DOI: https://doi.org/10.1002/wrna.54, PMID: 21957020
-
(2011)
Wiley Interdisciplinary Reviews: RNA
, vol.2
, pp. 321-335
-
-
Chan, S.1
Choi, E.A.2
Shi, Y.3
-
11
-
-
84922392412
-
CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3’ processing
-
PMID: 25301780
-
Chan SL, Huppertz I, Yao C, Weng L, Moresco JJ, Yates JR, Ule J, Manley JL, Shi Y. 2014. CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3’ processing. Genes & Development 28:2370-2380. DOI: https://doi.org/10.1101/gad.250993.114, PMID: 25301780
-
(2014)
Genes & Development
, vol.28
, pp. 2370-2380
-
-
Chan, S.L.1
Huppertz, I.2
Yao, C.3
Weng, L.4
Moresco, J.J.5
Yates, J.R.6
Ule, J.7
Manley, J.L.8
Shi, Y.9
-
12
-
-
84926486138
-
Rappsilber J. 2015. xiNET: Cross-link network maps with residue resolution
-
PMID: 25648531
-
Combe CW, Fischer L, Rappsilber J. 2015. xiNET: cross-link network maps with residue resolution. Molecular & Cellular Proteomics 14:1137-1147. DOI: https://doi.org/10.1074/mcp.O114.042259, PMID: 25648531
-
Molecular & Cellular Proteomics
, vol.14
, pp. 1137-1147
-
-
Combe, C.W.1
Fischer, L.2
-
13
-
-
51349124912
-
Structural basis for suppression of a host antiviral response by influenza A virus
-
PMID: 18725644
-
Das K, Ma LC, Xiao R, Radvansky B, Aramini J, Zhao L, Marklund J, Kuo RL, Twu KY, Arnold E, Krug RM, Montelione GT. 2008. Structural basis for suppression of a host antiviral response by influenza A virus. PNAS 105:13093-13098. DOI: https://doi.org/10.1073/pnas.0805213105, PMID: 18725644
-
(2008)
PNAS
, vol.105
, pp. 13093-13098
-
-
Das, K.1
Ma, L.C.2
Xiao, R.3
Radvansky, B.4
Aramini, J.5
Zhao, L.6
Marklund, J.7
Kuo, R.L.8
Twu, K.Y.9
Arnold, E.10
Krug, R.M.11
Montelione, G.T.12
-
14
-
-
84861903786
-
A quantitative atlas of polyadenylation in five mammals
-
PMID: 22454233
-
Derti A, Garrett-Engele P, Macisaac KD, Stevens RC, Sriram S, Chen R, Rohl CA, Johnson JM, Babak T. 2012. A quantitative atlas of polyadenylation in five mammals. Genome Research 22:1173-1183. DOI: https://doi.org/10.1101/gr.132563.111, PMID: 22454233
-
(2012)
Genome Research
, vol.22
, pp. 1173-1183
-
-
Derti, A.1
Garrett-Engele, P.2
Macisaac, K.D.3
Stevens, R.C.4
Sriram, S.5
Chen, R.6
Rohl, C.A.7
Johnson, J.M.8
Babak, T.9
-
15
-
-
0036682601
-
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination
-
PMID: 12145212
-
Dichtl B, Blank D, Sadowski M, Hübner W, Weiser S, Keller W. 2002. Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination. The EMBO Journal 21:4125-4135. DOI: https://doi.org/10.1093/emboj/cdf390, PMID: 12145212
-
(2002)
The EMBO Journal
, vol.21
, pp. 4125-4135
-
-
Dichtl, B.1
Blank, D.2
Sadowski, M.3
Hübner, W.4
Weiser, S.5
Keller, W.6
-
16
-
-
84879408529
-
Alternative cleavage and polyadenylation: Extent, regulation and function
-
PMID: 23774734
-
Elkon R, Ugalde AP, Agami R. 2013. Alternative cleavage and polyadenylation: extent, regulation and function. Nature Reviews Genetics 14:496-506. DOI: https://doi.org/10.1038/nrg3482, PMID: 23774734
-
(2013)
Nature Reviews Genetics
, vol.14
, pp. 496-506
-
-
Elkon, R.1
Ugalde, A.P.2
Agami, R.3
-
17
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
PMID: 15572765
-
Emsley P, Cowtan K. 2004. Coot: model-building tools for molecular graphics. Acta Crystallographica Section D Biological Crystallography 60:2126-2132. DOI: https://doi.org/10.1107/S0907444904019158, PMID: 15572765
-
(2004)
Acta Crystallographica Section D Biological Crystallography
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
18
-
-
0021773137
-
A sequence downstream of AAUAAA is required for rabbit beta-globin mRNA 3’-end formation
-
PMID: 6095108
-
Gil A, Proudfoot NJ. 1984. A sequence downstream of AAUAAA is required for rabbit beta-globin mRNA 3’-end formation. Nature 312:473-474. DOI: https://doi.org/10.1038/312473a0, PMID: 6095108
-
(1984)
Nature
, vol.312
, pp. 473-474
-
-
Gil, A.1
Proudfoot, N.J.2
-
19
-
-
0023647927
-
Position-dependent sequence elements downstream of AAUAAA are required for efficient rabbit beta-globin mRNA 3’ end formation
-
PMID: 3568131
-
Gil A, Proudfoot NJ. 1987. Position-dependent sequence elements downstream of AAUAAA are required for efficient rabbit beta-globin mRNA 3’ end formation. Cell 49:399-406. DOI: https://doi.org/10.1016/0092-8674(87)90292-3, PMID: 3568131
-
(1987)
Cell
, vol.49
, pp. 399-406
-
-
Gil, A.1
Proudfoot, N.J.2
-
20
-
-
85039039173
-
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
-
PMID: 28710774
-
Goddard TD, Huang CC, Meng EC, Pettersen EF, Couch GS, Morris JH, Ferrin TE. 2018. UCSF ChimeraX: Meeting modern challenges in visualization and analysis. Protein Science 27:14-25. DOI: https://doi.org/10.1002/pro.3235, PMID: 28710774
-
(2018)
Protein Science
, vol.27
, pp. 14-25
-
-
Goddard, T.D.1
Huang, C.C.2
Meng, E.C.3
Pettersen, E.F.4
Couch, G.S.5
Morris, J.H.6
Ferrin, T.E.7
-
21
-
-
84885078620
-
DNA damage induces targeted, genome-wide variation of poly(A) sites in budding yeast
-
PMID: 23788651
-
Graber JH, Nazeer FI, Yeh PC, Kuehner JN, Borikar S, Hoskinson D, Moore CL. 2013. DNA damage induces targeted, genome-wide variation of poly(A) sites in budding yeast. Genome Research 23:1690-1703. DOI: https://doi.org/10.1101/gr.144964.112, PMID: 23788651
-
(2013)
Genome Research
, vol.23
, pp. 1690-1703
-
-
Graber, J.H.1
Nazeer, F.I.2
Yeh, P.C.3
Kuehner, J.N.4
Borikar, S.5
Hoskinson, D.6
Moore, C.L.7
-
22
-
-
85019473116
-
MacroBac: New technologies for robust and efficient large-scale production of recombinant multiprotein complexes
-
PMID: 28668116
-
Gradia SD, Ishida JP, Tsai MS, Jeans C, Tainer JA, Fuss JO. 2017. MacroBac: new technologies for robust and efficient large-scale production of recombinant multiprotein complexes. Methods in Enzymology 592:1-26. DOI: https://doi.org/10.1016/bs.mie.2017.03.008, PMID: 28668116
-
(2017)
Methods in Enzymology
, vol.592
, pp. 1-26
-
-
Gradia, S.D.1
Ishida, J.P.2
Tsai, M.S.3
Jeans, C.4
Tainer, J.A.5
Fuss, J.O.6
-
23
-
-
0028818260
-
Sherman F. 1995. 3’-end-forming signals of yeast mRNA
-
PMID: 7565751
-
Guo Z, Sherman F. 1995. 3’-end-forming signals of yeast mRNA. Molecular and Cellular Biology 15:5983-5990. DOI: https://doi.org/10.1128/MCB.15.11.5983, PMID: 7565751
-
Molecular and Cellular Biology
, vol.15
, pp. 5983-5990
-
-
Guo, Z.1
-
24
-
-
84891955589
-
MRNA 3’end processing: A tale of the tail reaches the clinic
-
PMID: 24408965
-
Hollerer I, Grund K, Hentze MW, Kulozik AE. 2014. mRNA 3’end processing: a tale of the tail reaches the clinic. EMBO Molecular Medicine 6:16-26. DOI: https://doi.org/10.1002/emmm.201303300, PMID: 24408965
-
(2014)
EMBO Molecular Medicine
, vol.6
, pp. 16-26
-
-
Hollerer, I.1
Grund, K.2
Hentze, M.W.3
Kulozik, A.E.4
-
25
-
-
84873405541
-
Analysis of alternative cleavage and polyadenylation by 3’ region extraction and deep sequencing
-
PMID: 23241633
-
Hoque M, Ji Z, Zheng D, Luo W, Li W, You B, Park JY, Yehia G, Tian B. 2013. Analysis of alternative cleavage and polyadenylation by 3’ region extraction and deep sequencing. Nature Methods 10:133-139. DOI: https://doi.org/10.1038/nmeth.2288, PMID: 23241633
-
(2013)
Nature Methods
, vol.10
, pp. 133-139
-
-
Hoque, M.1
Ji, Z.2
Zheng, D.3
Luo, W.4
Li, W.5
You, B.6
Park, J.Y.7
Yehia, G.8
Tian, B.9
-
26
-
-
66049104920
-
Progressive lengthening of 3’ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
-
PMID: 19372383
-
Ji Z, Lee JY, Pan Z, Jiang B, Tian B. 2009. Progressive lengthening of 3’ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. PNAS 106:7028-7033. DOI: https://doi.org/10.1073/pnas.0900028106, PMID: 19372383
-
(2009)
PNAS
, vol.106
, pp. 7028-7033
-
-
Ji, Z.1
Lee, J.Y.2
Pan, Z.3
Jiang, B.4
Tian, B.5
-
27
-
-
76449099287
-
XDS. Acta Crystallographica. Section D
-
PMID: 20124692
-
Kabsch W. 2010. XDS. Acta Crystallographica. Section D, Biological Crystallography 66:125-132. DOI: https://doi.org/10.1107/S0907444909047337, PMID: 20124692
-
(2010)
Biological Crystallography
, vol.66
, pp. 125-132
-
-
Kabsch, W.1
-
28
-
-
1442313922
-
Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase
-
PMID: 14749727
-
Kaufmann I, Martin G, Friedlein A, Langen H, Keller W. 2004. Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase. The EMBO Journal 23:616-626. DOI: https://doi.org/10.1038/sj.emboj.7600070, PMID: 14749727
-
(2004)
The EMBO Journal
, vol.23
, pp. 616-626
-
-
Kaufmann, I.1
Martin, G.2
Friedlein, A.3
Langen, H.4
Keller, W.5
-
29
-
-
0026041206
-
Cleavage and polyadenylation factor CPF specifically interacts with the pre-mRNA 3’ processing signal AAUAAA
-
PMID: 1756731
-
Keller W, Bienroth S, Lang KM, Christofori G. 1991. Cleavage and polyadenylation factor CPF specifically interacts with the pre-mRNA 3’ processing signal AAUAAA. The EMBO Journal 10:4241-4249. PMID: 1756731
-
(1991)
The EMBO Journal
, vol.10
, pp. 4241-4249
-
-
Keller, W.1
Bienroth, S.2
Lang, K.M.3
Christofori, G.4
-
30
-
-
84898878378
-
Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal
-
PMID: 24596251
-
Lackford B, Yao C, Charles GM, Weng L, Zheng X, Choi EA, Xie X, Wan J, Xing Y, Freudenberg JM, Yang P, Jothi R, Hu G, Shi Y. 2014. Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal. The EMBO Journal 33:878-889. DOI: https://doi.org/10.1002/embj.201386537, PMID: 24596251
-
(2014)
The EMBO Journal
, vol.33
, pp. 878-889
-
-
Lackford, B.1
Yao, C.2
Charles, G.M.3
Weng, L.4
Zheng, X.5
Choi, E.A.6
Xie, X.7
Wan, J.8
Xing, Y.9
Freudenberg, J.M.10
Yang, P.11
Jothi, R.12
Hu, G.13
Shi, Y.14
-
31
-
-
84891714984
-
Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline
-
PMID: 24356771
-
Leitner A, Walzthoeni T, Aebersold R. 2014. Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline. Nature Protocols 9:120-137. DOI: https://doi.org/10.1038/nprot.2013.168, PMID: 24356771
-
(2014)
Nature Protocols
, vol.9
, pp. 120-137
-
-
Leitner, A.1
Walzthoeni, T.2
Aebersold, R.3
-
32
-
-
30344460705
-
Structure of DDB1 in complex with a paramyxovirus V protein: Viral hijack of a propeller cluster in ubiquitin ligase
-
PMID: 16413485
-
Li T, Chen X, Garbutt KC, Zhou P, Zheng N. 2006. Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase. Cell 124:105-117. DOI: https://doi.org/10.1016/j.cell.2005.10.033, PMID: 16413485
-
(2006)
Cell
, vol.124
, pp. 105-117
-
-
Li, T.1
Chen, X.2
Garbutt, K.C.3
Zhou, P.4
Zheng, N.5
-
33
-
-
33845902048
-
Polyadenylation factor CPSF-73 is the pre-mRNA 3’-end-processing endonuclease
-
PMID: 17128255
-
Mandel CR, Kaneko S, Zhang H, Gebauer D, Vethantham V, Manley JL, Tong L. 2006. Polyadenylation factor CPSF-73 is the pre-mRNA 3’-end-processing endonuclease. Nature 444:953-956. DOI: https://doi.org/10.1038/nature05363, PMID: 17128255
-
(2006)
Nature
, vol.444
, pp. 953-956
-
-
Mandel, C.R.1
Kaneko, S.2
Zhang, H.3
Gebauer, D.4
Vethantham, V.5
Manley, J.L.6
Tong, L.7
-
34
-
-
84863093884
-
Genome-wide analysis of pre-mRNA 3’ end processing reveals a decisive role of human cleavage factor I in the regulation of 3’ UTR length
-
PMID: 22813749
-
Martin G, Gruber AR, Keller W, Zavolan M. 2012. Genome-wide analysis of pre-mRNA 3’ end processing reveals a decisive role of human cleavage factor I in the regulation of 3’ UTR length. Cell Reports 1:753-763. DOI: https://doi.org/10.1016/j.celrep.2012.05.003, PMID: 22813749
-
(2012)
Cell Reports
, vol.1
, pp. 753-763
-
-
Martin, G.1
Gruber, A.R.2
Keller, W.3
Zavolan, M.4
-
35
-
-
0022431870
-
The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3’ termini
-
PMID: 2987822
-
McLauchlan J, Gaffney D, Whitton JL, Clements JB. 1985. The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3’ termini. Nucleic Acids Research 13:1347-1368. DOI: https://doi.org/10.1093/nar/13.4.1347, PMID: 2987822
-
(1985)
Nucleic Acids Research
, vol.13
, pp. 1347-1368
-
-
McLauchlan, J.1
Gaffney, D.2
Whitton, J.L.3
Clements, J.B.4
-
36
-
-
0026694636
-
Characterization of the multisubunit cleavage-polyadenylation specificity factor from calf thymus
-
PMID: 1634525
-
Murthy KG, Manley JL. 1992. Characterization of the multisubunit cleavage-polyadenylation specificity factor from calf thymus. The Journal of Biological Chemistry 267:14804-14811. PMID: 1634525
-
(1992)
The Journal of Biological Chemistry
, vol.267
, pp. 14804-14811
-
-
Murthy, K.G.1
Manley, J.L.2
-
37
-
-
0028789410
-
The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3’-end formation
-
PMID: 7590244
-
Murthy KG, Manley JL. 1995. The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3’-end formation. Genes & Development 9:2672-2683. DOI: https://doi.org/10.1101/gad.9.21.2672, PMID: 7590244
-
(1995)
Genes & Development
, vol.9
, pp. 2672-2683
-
-
Murthy, K.G.1
Manley, J.L.2
-
38
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
PMID: 15264254
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE. 2004. UCSF Chimera-a visualization system for exploratory research and analysis. Journal of Computational Chemistry 25:1605-1612. DOI: https://doi.org/10.1002/jcc.20084, PMID: 15264254
-
(2004)
Journal of Computational Chemistry
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
39
-
-
0017089669
-
3’ non-coding region sequences in eukaryotic messenger RNA
-
PMID: 822353
-
Proudfoot NJ, Brownlee GG. 1976. 3’ non-coding region sequences in eukaryotic messenger RNA. Nature 263: 211-214. DOI: https://doi.org/10.1038/263211a0, PMID: 822353
-
(1976)
Nature
, vol.263
, pp. 211-214
-
-
Proudfoot, N.J.1
Brownlee, G.G.2
-
40
-
-
84904790793
-
Deciphering key features in protein structures with the new ENDscript server
-
PMID: 24753421
-
Robert X, Gouet P. 2014. Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Research 42:W320-W324. DOI: https://doi.org/10.1093/nar/gku316, PMID: 24753421
-
(2014)
Nucleic Acids Research
, vol.42
, pp. W320-W324
-
-
Robert, X.1
Gouet, P.2
-
41
-
-
1642488290
-
Evidence that polyadenylation factor CPSF-73 is the mRNA 3’ processing endonuclease
-
PMID: 15037765
-
Ryan K, Calvo O, Manley JL. 2004. Evidence that polyadenylation factor CPSF-73 is the mRNA 3’ processing endonuclease. RNA 10:565-573. DOI: https://doi.org/10.1261/rna.5214404, PMID: 15037765
-
(2004)
RNA
, vol.10
, pp. 565-573
-
-
Ryan, K.1
Calvo, O.2
Manley, J.L.3
-
42
-
-
46249092601
-
Proliferating cells express mRNAs with shortened 3’ untranslated regions and fewer microRNA target sites
-
PMID: 18566288
-
Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB. 2008. Proliferating cells express mRNAs with shortened 3’ untranslated regions and fewer microRNA target sites. Science 320:1643-1647. DOI: https://doi.org/10.1126/science.1155390, PMID: 18566288
-
(2008)
Science
, vol.320
, pp. 1643-1647
-
-
Sandberg, R.1
Neilson, J.R.2
Sarma, A.3
Sharp, P.A.4
Burge, C.B.5
-
43
-
-
84908457963
-
Reconstitution of CPSF active in polyadenylation: Recognition of the polyadenylation signal by WDR33
-
PMID: 25301781
-
Schönemann L, Kühn U, Martin G, Schäfer P, Gruber AR, Keller W, Zavolan M, Wahle E. 2014. Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33. Genes & Development 28:2381-2393. DOI: https://doi.org/10.1101/gad.250985.114, PMID: 25301781
-
(2014)
Genes & Development
, vol.28
, pp. 2381-2393
-
-
Schönemann, L.1
Kühn, U.2
Martin, G.3
Schäfer, P.4
Gruber, A.R.5
Keller, W.6
Zavolan, M.7
Wahle, E.8
-
44
-
-
57749198023
-
Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex
-
PMID: 19109893
-
Scrima A, Konícková R, Czyzewski BK, Kawasaki Y, Jeffrey PD, Groisman R, Nakatani Y, Iwai S, Pavletich NP, Thomä NH. 2008. Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell 135: 1213-1223. DOI: https://doi.org/10.1016/j.cell.2008.10.045, PMID: 19109893
-
(2008)
Cell
, vol.135
, pp. 1213-1223
-
-
Scrima, A.1
Konícková, R.2
Czyzewski, B.K.3
Kawasaki, Y.4
Jeffrey, P.D.5
Groisman, R.6
Nakatani, Y.7
Iwai, S.8
Pavletich, N.P.9
Thomä, N.H.10
-
45
-
-
0025029405
-
Point mutations in AAUAAA and the poly (A) addition site: Effects on the accuracy and efficiency of cleavage and polyadenylation in vitro
-
PMID: 2170946
-
Sheets MD, Ogg SC, Wickens MP. 1990. Point mutations in AAUAAA and the poly (A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro. Nucleic Acids Research 18:5799-5805. DOI: https://doi.org/10.1093/nar/18.19.5799, PMID: 2170946
-
(1990)
Nucleic Acids Research
, vol.18
, pp. 5799-5805
-
-
Sheets, M.D.1
Ogg, S.C.2
Wickens, M.P.3
-
46
-
-
79953014914
-
Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
-
PMID: 21343387
-
Shepard PJ, Choi EA, Lu J, Flanagan LA, Hertel KJ, Shi Y. 2011. Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq. RNA 17:761-772. DOI: https://doi.org/10.1261/rna.2581711, PMID: 21343387
-
(2011)
RNA
, vol.17
, pp. 761-772
-
-
Shepard, P.J.1
Choi, E.A.2
Lu, J.3
Flanagan, L.A.4
Hertel, K.J.5
Shi, Y.6
-
47
-
-
59649122202
-
Molecular architecture of the human pre-mRNA 3’ processing complex
-
PMID: 19217410
-
Shi Y, Di Giammartino DC, Taylor D, Sarkeshik A, Rice WJ, Yates JR, Frank J, Manley JL. 2009. Molecular architecture of the human pre-mRNA 3’ processing complex. Molecular Cell 33:365-376. DOI: https://doi.org/10.1016/j.molcel.2008.12.028, PMID: 19217410
-
(2009)
Molecular Cell
, vol.33
, pp. 365-376
-
-
Shi, Y.1
Di Giammartino, D.C.2
Taylor, D.3
Sarkeshik, A.4
Rice, W.J.5
Yates, J.R.6
Frank, J.7
Manley, J.L.8
-
48
-
-
84929453434
-
The end of the message: Multiple protein-RNA interactions define the mRNA polyadenylation site
-
PMID: 25934501
-
Shi Y, Manley JL. 2015. The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site. Genes & Development 29:889-897. DOI: https://doi.org/10.1101/gad.261974.115, PMID: 25934501
-
(2015)
Genes & Development
, vol.29
, pp. 889-897
-
-
Shi, Y.1
Manley, J.L.2
-
49
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using clustal omega
-
PMID: 21988835
-
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG. 2011. Fast, scalable generation of high-quality protein multiple sequence alignments using clustal omega. Molecular Systems Biology 7:539. DOI: https://doi.org/10.1038/msb.2011.75, PMID: 21988835
-
(2011)
Molecular Systems Biology
, vol.7
, pp. 539
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.3
Gibson, T.J.4
Karplus, K.5
Li, W.6
Lopez, R.7
McWilliam, H.8
Remmert, M.9
Söding, J.10
Thompson, J.D.11
Higgins, D.G.12
-
50
-
-
85041959711
-
Molecular basis for the recognition of the human AAUAAA polyadenylation signal
-
PMID: 29208711
-
Sun Y, Zhang Y, Hamilton K, Manley JL, Shi Y, Walz T, Tong L. 2017. Molecular basis for the recognition of the human AAUAAA polyadenylation signal. PNAS:201718723. DOI: https://doi.org/10.1073/pnas.1718723115, PMID: 29208711
-
(2017)
PNAS
-
-
Sun, Y.1
Zhang, Y.2
Hamilton, K.3
Manley, J.L.4
Shi, Y.5
Walz, T.6
Tong, L.7
-
51
-
-
0024284107
-
Separation and characterization of a poly(A) polymerase and a cleavage/ specificity factor required for pre-mRNA polyadenylation
-
PMID: 2830992
-
Takagaki Y, Ryner LC, Manley JL. 1988. Separation and characterization of a poly(A) polymerase and a cleavage/ specificity factor required for pre-mRNA polyadenylation. Cell 52:731-742. DOI: https://doi.org/10.1016/0092-8674(88)90411-4, PMID: 2830992
-
(1988)
Cell
, vol.52
, pp. 731-742
-
-
Takagaki, Y.1
Ryner, L.C.2
Manley, J.L.3
-
52
-
-
84988719252
-
Alternative polyadenylation of mRNA precursors
-
PMID: 27677860
-
Tian B, Manley JL. 2017. Alternative polyadenylation of mRNA precursors. Nature Reviews Molecular Cell Biology 18:18-30. DOI: https://doi.org/10.1038/nrm.2016.116, PMID: 27677860
-
(2017)
Nature Reviews Molecular Cell Biology
, vol.18
, pp. 18-30
-
-
Tian, B.1
Manley, J.L.2
-
53
-
-
84866118432
-
False discovery rate estimation for cross-linked peptides identified by mass spectrometry
-
PMID: 22772729
-
Walzthoeni T, Claassen M, Leitner A, Herzog F, Bohn S, Förster F, Beck M, Aebersold R. 2012. False discovery rate estimation for cross-linked peptides identified by mass spectrometry. Nature Methods 9:901-903. DOI: https://doi.org/10.1038/nmeth.2103, PMID: 22772729
-
(2012)
Nature Methods
, vol.9
, pp. 901-903
-
-
Walzthoeni, T.1
Claassen, M.2
Leitner, A.3
Herzog, F.4
Bohn, S.5
Förster, F.6
Beck, M.7
Aebersold, R.8
|