-
1
-
-
84908491115
-
Drugging the undruggable RAS: Mission possible?
-
Cox, A. D., Fesik, S. W., Kimmelman, A. C., Luo, J. & Der, C. J. Drugging the undruggable RAS: mission possible? Nat. Rev. Drug Discov. 13, 828-851 (2014).
-
(2014)
Nat. Rev. Drug Discov.
, vol.13
, pp. 828-851
-
-
Cox, A.D.1
Fesik, S.W.2
Kimmelman, A.C.3
Luo, J.4
Der, C.J.5
-
2
-
-
84979896267
-
High-throughput phenotyping of lung cancer somatic mutations
-
Berger, A. H. et al. High-throughput phenotyping of lung cancer somatic mutations. Cancer Cell 30, 214-228 (2016).
-
(2016)
Cancer Cell
, vol.30
, pp. 214-228
-
-
Berger, A.H.1
-
3
-
-
84905029258
-
Comprehensive molecular profiling of lung adenocarcinoma
-
Cancer Genome Atlas Research Network
-
Cancer Genome Atlas Research Network. Comprehensive molecular profiling of lung adenocarcinoma. Nature 511, 543-550 (2014).
-
(2014)
Nature
, vol.511
, pp. 543-550
-
-
-
4
-
-
33750885385
-
Dysfunctional KEAP1-NRF2 interaction in non-small-cell lung cancer
-
Singh, A. et al. Dysfunctional KEAP1-NRF2 interaction in non-small-cell lung cancer. PLoS Med. 3, e420 (2006).
-
(2006)
PLoS Med.
, vol.3
, pp. e420
-
-
Singh, A.1
-
5
-
-
0031577292
-
An Nrf2/small Maf heterodimer mediates the induction of phase II detoxifying enzyme genes through antioxidant response elements
-
Itoh, K. et al. An Nrf2/small Maf heterodimer mediates the induction of phase II detoxifying enzyme genes through antioxidant response elements. Biochem. Biophys. Res. Commun. 236, 313-322 (1997).
-
(1997)
Biochem. Biophys. Res. Commun.
, vol.236
, pp. 313-322
-
-
Itoh, K.1
-
6
-
-
0032953192
-
Keap1 represses nuclear activation of antioxidant responsive elements by Nrf2 through binding to the amino-terminal Neh2 domain
-
Itoh, K. et al. Keap1 represses nuclear activation of antioxidant responsive elements by Nrf2 through binding to the amino-terminal Neh2 domain. Genes Dev. 13, 76-86 (1999).
-
(1999)
Genes Dev.
, vol.13
, pp. 76-86
-
-
Itoh, K.1
-
7
-
-
84863764614
-
Nrf2 redirects glucose and glutamine into anabolic pathways in metabolic reprogramming
-
Mitsuishi, Y. et al. Nrf2 redirects glucose and glutamine into anabolic pathways in metabolic reprogramming. Cancer Cell 22, 66-79 (2012).
-
(2012)
Cancer Cell
, vol.22
, pp. 66-79
-
-
Mitsuishi, Y.1
-
8
-
-
84922783167
-
Glutathione and thioredoxin antioxidant pathways synergize to drive cancer initiation and progression
-
Harris, I. S. et al. Glutathione and thioredoxin antioxidant pathways synergize to drive cancer initiation and progression. Cancer Cell 27, 211-222 (2015).
-
(2015)
Cancer Cell
, vol.27
, pp. 211-222
-
-
Harris, I.S.1
-
9
-
-
84949102276
-
NRF2 regulates serine biosynthesis in non-small cell lung cancer
-
DeNicola, G. M. et al. NRF2 regulates serine biosynthesis in non-small cell lung cancer. Nat. Genet. 47, 1475-1481 (2015).
-
(2015)
Nat. Genet.
, vol.47
, pp. 1475-1481
-
-
DeNicola, G.M.1
-
10
-
-
84988615398
-
Altered metabolite levels in cancer: Implications for tumour biology and cancer therapy
-
Sullivan, L. B., Gui, D. Y. & Heiden, M. G. V. Altered metabolite levels in cancer: implications for tumour biology and cancer therapy. Nat. Rev. Cancer 16, 680-693 (2016).
-
(2016)
Nat. Rev. Cancer
, vol.16
, pp. 680-693
-
-
Sullivan, L.B.1
Gui, D.Y.2
Heiden, M.G.V.3
-
11
-
-
68149157175
-
Conditional mouse lung cancer models using adenoviral or lentiviral delivery of Cre recombinase
-
DuPage, M., Dooley, A. L. & Jacks, T. Conditional mouse lung cancer models using adenoviral or lentiviral delivery of Cre recombinase. Nat. Protoc. 4, 1064-1072 (2009).
-
(2009)
Nat. Protoc.
, vol.4
, pp. 1064-1072
-
-
DuPage, M.1
Dooley, A.L.2
Jacks, T.3
-
12
-
-
84923118778
-
Rapid modelling of cooperating genetic events in cancer through somatic genome editing
-
Sánchez-Rivera, F. J. et al. Rapid modelling of cooperating genetic events in cancer through somatic genome editing. Nature 516, 428-431 (2014).
-
(2014)
Nature
, vol.516
, pp. 428-431
-
-
Sánchez-Rivera, F.J.1
-
13
-
-
84943653412
-
Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma
-
Mazur, P. K. et al. Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma. Nat. Med. 21, 1163-1171 (2015).
-
(2015)
Nat. Med.
, vol.21
, pp. 1163-1171
-
-
Mazur, P.K.1
-
14
-
-
84958138936
-
Environment impacts the metabolic dependencies of ras-driven non-small cell lung cancer
-
Davidson, S. M. et al. Environment impacts the metabolic dependencies of ras-driven non-small cell lung cancer. Cell Metab. 23, 517-528 (2016).
-
(2016)
Cell Metab.
, vol.23
, pp. 517-528
-
-
Davidson, S.M.1
-
15
-
-
84959295529
-
Multiplexed pancreatic genome engineering and cancer induction by transfection-based CRISPR/Cas9 delivery in mice
-
Maresch, R. et al. Multiplexed pancreatic genome engineering and cancer induction by transfection-based CRISPR/Cas9 delivery in mice. Nat. Commun. 7, 10770 (2016).
-
(2016)
Nat. Commun.
, vol.7
, pp. 10770
-
-
Maresch, R.1
-
16
-
-
84974576984
-
Whole-organism lineage tracing by combinatorial and cumulative genome editing
-
McKenna, A. et al. Whole-organism lineage tracing by combinatorial and cumulative genome editing. Science 353, aaf7907 (2016).
-
(2016)
Science
, vol.353
, pp. aaf7907
-
-
McKenna, A.1
-
17
-
-
85006351788
-
Recurrent loss of NFE2L2 exon 2 is a mechanism for Nrf2 pathway activation in human cancers
-
Goldstein, L. D. et al. Recurrent loss of NFE2L2 exon 2 is a mechanism for Nrf2 pathway activation in human cancers. Cell Rep. 16, 2605-2617 (2016).
-
(2016)
Cell Rep.
, vol.16
, pp. 2605-2617
-
-
Goldstein, L.D.1
-
18
-
-
70449109147
-
Requirement for NF-B signalling in a mouse model of lung adenocarcinoma
-
Meylan, E. et al. Requirement for NF-B signalling in a mouse model of lung adenocarcinoma. Nature 462, 104-107 (2009).
-
(2009)
Nature
, vol.462
, pp. 104-107
-
-
Meylan, E.1
-
19
-
-
54249087596
-
RNAi-mediated silencing of nuclear factor erythroid-2-related factor 2 gene expression in non-small cell lung cancer inhibits tumor growth and increases efficacy of chemotherapy
-
Singh, A. et al. RNAi-mediated silencing of nuclear factor erythroid-2-related factor 2 gene expression in non-small cell lung cancer inhibits tumor growth and increases efficacy of chemotherapy. Cancer Res. 68, 7975-7984 (2008).
-
(2008)
Cancer Res.
, vol.68
, pp. 7975-7984
-
-
Singh, A.1
-
20
-
-
77957237159
-
Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-seq profiling and network analysis
-
Malhotra, D. et al. Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-seq profiling and network analysis. Nucleic Acids Res. 38, 5718-5734 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5718-5734
-
-
Malhotra, D.1
-
21
-
-
84873363313
-
SLC1A5 mediates glutamine transport required for lung cancer cell growth and survival
-
Hassanein, M. et al. SLC1A5 mediates glutamine transport required for lung cancer cell growth and survival. Clin. Cancer Res. 19, 560-570 (2013).
-
(2013)
Clin. Cancer Res.
, vol.19
, pp. 560-570
-
-
Hassanein, M.1
-
22
-
-
84856014884
-
Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia
-
Metallo, C. M. et al. Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia. Nature 481, 380-384 (2011).
-
(2011)
Nature
, vol.481
, pp. 380-384
-
-
Metallo, C.M.1
-
23
-
-
84982993825
-
From Krebs to clinic: Glutamine metabolism to cancer therapy
-
Altman, B. J., Stine, Z. E. & Dang, C. V. From Krebs to clinic: glutamine metabolism to cancer therapy. Nat. Rev. Cancer 16, 619-634 (2016).
-
(2016)
Nat. Rev. Cancer
, vol.16
, pp. 619-634
-
-
Altman, B.J.1
Stine, Z.E.2
Dang, C.V.3
-
24
-
-
80054835050
-
Targeted deletion of Nrf2 reduces urethane-induced lung tumor development in mice
-
Bauer, A. K. et al. Targeted deletion of Nrf2 reduces urethane-induced lung tumor development in mice. PLoS One 6, e26590 (2011).
-
(2011)
PLoS One
, vol.6
, pp. e26590
-
-
Bauer, A.K.1
-
25
-
-
79960060305
-
Oncogene-induced Nrf2 transcription promotes ROS detoxification and tumorigenesis
-
DeNicola, G. M. et al. Oncogene-induced Nrf2 transcription promotes ROS detoxification and tumorigenesis. Nature 475, 106-109 (2011).
-
(2011)
Nature
, vol.475
, pp. 106-109
-
-
DeNicola, G.M.1
-
26
-
-
84880048347
-
Nrf2 prevents initiation but accelerates progression through the Kras signaling pathway during lung carcinogenesis
-
Satoh, H., Moriguchi, T., Takai, J., Ebina, M. & Yamamoto, M. Nrf2 prevents initiation but accelerates progression through the Kras signaling pathway during lung carcinogenesis. Cancer Res. 73, 4158-4168 (2013).
-
(2013)
Cancer Res.
, vol.73
, pp. 4158-4168
-
-
Satoh, H.1
Moriguchi, T.2
Takai, J.3
Ebina, M.4
Yamamoto, M.5
-
27
-
-
84893857285
-
Antioxidants accelerate lung cancer progression in mice
-
Sayin, V. I. et al. Antioxidants accelerate lung cancer progression in mice. Sci. Transl. Med. 6, 221ra15 (2014).
-
(2014)
Sci. Transl. Med.
, vol.6
, pp. 221ra15
-
-
Sayin, V.I.1
-
28
-
-
84979776414
-
NRF2 promotes tumor maintenance by modulating mRNA translation in pancreatic cancer
-
Chio, I. I. et al. NRF2 promotes tumor maintenance by modulating mRNA translation in pancreatic cancer. Cell 166, 963-976 (2016).
-
(2016)
Cell
, vol.166
, pp. 963-976
-
-
Chio, I.I.1
-
29
-
-
84973162648
-
NRF2 intensifies host defense systems to prevent lung carcinogenesis, but after tumor initiation accelerates malignant cell growth
-
Satoh, H. et al. NRF2 intensifies host defense systems to prevent lung carcinogenesis, but after tumor initiation accelerates malignant cell growth. Cancer Res. 76, 3088-3096 (2016).
-
(2016)
Cancer Res.
, vol.76
, pp. 3088-3096
-
-
Satoh, H.1
-
30
-
-
84960154307
-
Mutant Kras copy number defines metabolic reprogramming and therapeutic susceptibilities
-
Kerr, E. M., Gaude, E., Turrell, F. K., Frezza, C. & Martins, C. P. Mutant Kras copy number defines metabolic reprogramming and therapeutic susceptibilities. Nature 531, 110-113 (2016).
-
(2016)
Nature
, vol.531
, pp. 110-113
-
-
Kerr, E.M.1
Gaude, E.2
Turrell, F.K.3
Frezza, C.4
Martins, C.P.5
-
31
-
-
84866894408
-
Comprehensive genomic characterization of squamous cell lung cancers
-
Cancer Genome Atlas Research Network. Comprehensive genomic characterization of squamous cell lung cancers. Nature 489, 519-525 (2012).
-
(2012)
Nature
, vol.489
, pp. 519-525
-
-
Genome Atlas Research Network, C.1
-
32
-
-
84885944468
-
The emerging role of the Nrf2-Keap1 signaling pathway in cancer
-
Jaramillo, M. C. & Zhang, D. D. The emerging role of the Nrf2-Keap1 signaling pathway in cancer. Genes Dev. 27, 2179-2191 (2013).
-
(2013)
Genes Dev.
, vol.27
, pp. 2179-2191
-
-
Jaramillo, M.C.1
Zhang, D.D.2
-
33
-
-
79960958309
-
Keap1 mutations and Nrf2 pathway activation in epithelial ovarian cancer
-
Konstantinopoulos, P. A. et al. Keap1 mutations and Nrf2 pathway activation in epithelial ovarian cancer. Cancer Res. 71, 5081-5089 (2011).
-
(2011)
Cancer Res.
, vol.71
, pp. 5081-5089
-
-
Konstantinopoulos, P.A.1
-
34
-
-
53049105119
-
Genetic alteration of Keap1 confers constitutive Nrf2 activation and resistance to chemotherapy in gallbladder cancer
-
Shibata, T. et al. Genetic alteration of Keap1 confers constitutive Nrf2 activation and resistance to chemotherapy in gallbladder cancer. Gastroenterology 135, 1358-1368 (2008).
-
(2008)
Gastroenterology
, vol.135
, pp. 1358-1368
-
-
Shibata, T.1
-
35
-
-
76749106638
-
Oncogenic NRF2 mutations in squamous cell carcinomas of oesophagus and skin
-
Kim, Y. R. et al. Oncogenic NRF2 mutations in squamous cell carcinomas of oesophagus and skin. J. Pathol. 220, 446-451 (2010).
-
(2010)
J. Pathol.
, vol.220
, pp. 446-451
-
-
Kim, Y.R.1
-
36
-
-
84880967722
-
Integrated molecular analysis of clear-cell renal cell carcinoma
-
Sato, Y. et al. Integrated molecular analysis of clear-cell renal cell carcinoma. Nat. Genet. 45, 860-867 (2013).
-
(2013)
Nat. Genet.
, vol.45
, pp. 860-867
-
-
Sato, Y.1
-
37
-
-
85012878891
-
Keap1/Nrf2 pathway in kidney cancer: Frequent methylation of KEAP1 gene promoter in clear renal cell carcinoma
-
Fabrizio, F. P. et al. Keap1/Nrf2 pathway in kidney cancer: frequent methylation of KEAP1 gene promoter in clear renal cell carcinoma. Oncotarget 8, 11187-11198 (2017).
-
(2017)
Oncotarget
, vol.8
, pp. 11187-11198
-
-
Fabrizio, F.P.1
-
38
-
-
79952377052
-
Regulation of KEAP1 expression by promoter methylation in malignant gliomas and association with patient's outcome
-
Muscarella, L. A. et al. Regulation of KEAP1 expression by promoter methylation in malignant gliomas and association with patient's outcome. Epigenetics 6, 317-325 (2011).
-
(2011)
Epigenetics
, vol.6
, pp. 317-325
-
-
Muscarella, L.A.1
-
39
-
-
84857997256
-
Methylation of the KEAP1 gene promoter region in human colorectal cancer
-
Hanada, N. et al. Methylation of the KEAP1 gene promoter region in human colorectal cancer. BMC Cancer 12, 66 (2012).
-
(2012)
BMC Cancer
, vol.12
, pp. 66
-
-
Hanada, N.1
-
40
-
-
85013410562
-
KEAP1 loss modulates sensitivity to kinase targeted therapy in lung cancer
-
Krall, E. B. et al. KEAP1 loss modulates sensitivity to kinase targeted therapy in lung cancer. eLife 6, e18970 (2017).
-
(2017)
ELife
, vol.6
, pp. e18970
-
-
Krall, E.B.1
-
41
-
-
0035893252
-
Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-ras
-
Jackson, E. L. et al. Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-ras. Genes Dev. 15, 3243-3248 (2001).
-
(2001)
Genes Dev.
, vol.15
, pp. 3243-3248
-
-
Jackson, E.L.1
-
42
-
-
28544432790
-
The differential effects of mutant p53 alleles on advanced murine lung cancer
-
Jackson, E. L. et al. The differential effects of mutant p53 alleles on advanced murine lung cancer. Cancer Res. 65, 10280-10288 (2005).
-
(2005)
Cancer Res.
, vol.65
, pp. 10280-10288
-
-
Jackson, E.L.1
-
43
-
-
84957102206
-
Stromal expression of MIR-143/145 promotes neoangiogenesis in lung cancer development
-
Dimitrova, N. et al. Stromal expression of miR-143/145 promotes neoangiogenesis in lung cancer development. Cancer Discov. 6, 188-201 (2016).
-
(2016)
Cancer Discov.
, vol.6
, pp. 188-201
-
-
Dimitrova, N.1
-
44
-
-
84905262730
-
Improved vectors and genome-wide libraries for CRISPR screening
-
Sanjana, N. E., Shalem, O. & Zhang, F. Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11, 783-784 (2014).
-
(2014)
Nat. Methods
, vol.11
, pp. 783-784
-
-
Sanjana, N.E.1
Shalem, O.2
Zhang, F.3
-
45
-
-
84892765883
-
Genome-scale CRISPR-Cas9 knockout screening in human cells
-
Shalem, O. et al. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343, 84-87 (2014).
-
(2014)
Science
, vol.343
, pp. 84-87
-
-
Shalem, O.1
-
46
-
-
84979779187
-
Circadian rhythm disruption promotes lung tumorigenesis
-
Papagiannakopoulos, T. et al. Circadian rhythm disruption promotes lung tumorigenesis. Cell Metab. 24, 324-331 (2016).
-
(2016)
Cell Metab.
, vol.24
, pp. 324-331
-
-
Papagiannakopoulos, T.1
-
47
-
-
3242889975
-
Replacing suffix trees with enhanced suffix arrays
-
Abouelhoda, M. I., Kurtz, S. & Ohlebusch, E. Replacing suffix trees with enhanced suffix arrays. J. Discrete Algorithms (AMST) 2, 53-86 (2004).
-
(2004)
J. Discrete Algorithms (AMST)
, vol.2
, pp. 53-86
-
-
Abouelhoda, M.I.1
Kurtz, S.2
Ohlebusch, E.3
-
48
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T. F. & Waterman, M. S. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197 (1981).
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
49
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
50
-
-
39549090389
-
SeqAn an efficient, generic C. Library for sequence analysis
-
Döring, A., Weese, D., Rausch, T. & Reinert, K. SeqAn an efficient, generic C. library for sequence analysis. BMC Bioinformatics 9, 11 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 11
-
-
Döring, A.1
Weese, D.2
Rausch, T.3
Reinert, K.4
-
51
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdóttir, H., Robinson, J. T. & Mesirov, J. P. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14, 178-192 (2013).
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
52
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
53
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
54
-
-
84931049513
-
Sambamba: Fast processing of NGS alignment formats
-
Tarasov, A., Vilella, A. J., Cuppen, E., Nijman, I. J. & Prins, P. Sambamba: fast processing of NGS alignment formats. Bioinformatics 31, 2032-2034 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 2032-2034
-
-
Tarasov, A.1
Vilella, A.J.2
Cuppen, E.3
Nijman, I.J.4
Prins, P.5
-
55
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M. A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
-
56
-
-
84874025843
-
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
-
Cibulskis, K. et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 213-219
-
-
Cibulskis, K.1
-
57
-
-
85012931265
-
Chemosensitive relapse in small cell lung cancer proceeds through an EZH2-SLFN1L axis
-
Gardner, E. E. et al. Chemosensitive relapse in small cell lung cancer proceeds through an EZH2-SLFN1L axis. Cancer Cell 31, 286-299 (2017).
-
(2017)
Cancer Cell
, vol.31
, pp. 286-299
-
-
Gardner, E.E.1
-
58
-
-
84928105158
-
Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): A hybridization capture-based nextgeneration sequencing clinical assay for solid tumor molecular oncology
-
Cheng, D. T. et al. Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): a hybridization capture-based nextgeneration sequencing clinical assay for solid tumor molecular oncology. J. Mol. Diagn. 17, 251-264 (2015).
-
(2015)
J. Mol. Diagn.
, vol.17
, pp. 251-264
-
-
Cheng, D.T.1
-
59
-
-
84991275983
-
Quantitation of murine stroma and selective purification of the human tumor component of patient-derived xenografts for genomic analysis
-
Schneeberger, V. E., Allaj, V., Gardner, E. E., Poirier, J. T. & Rudin, C. M. Quantitation of murine stroma and selective purification of the human tumor component of patient-derived xenografts for genomic analysis. PLoS One 11, e0160587 (2016).
-
(2016)
PLoS One
, vol.11
, pp. e0160587
-
-
Schneeberger, V.E.1
Allaj, V.2
Gardner, E.E.3
Poirier, J.T.4
Rudin, C.M.5
-
60
-
-
70449091786
-
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
-
Barbie, D. A. et al. Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1. Nature 462, 108-112 (2009).
-
(2009)
Nature
, vol.462
, pp. 108-112
-
-
Barbie, D.A.1
-
61
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
-
62
-
-
84879661552
-
Transcription factor NRF2 regulates MIR-1 and MIR-206 to drive tumorigenesis
-
Singh, A. et al. Transcription factor NRF2 regulates miR-1 and miR-206 to drive tumorigenesis. J. Clin. Invest. 123, 2921-2934 (2013).
-
(2013)
J. Clin. Invest.
, vol.123
, pp. 2921-2934
-
-
Singh, A.1
-
63
-
-
84926507971
-
Limma powers differential expression analyses for RNAsequencing and microarray studies
-
Ritchie, M. E. et al. limma powers differential expression analyses for RNAsequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. e47
-
-
Ritchie, M.E.1
-
64
-
-
79961123152
-
RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li, B. & Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
65
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression inmRNA-Seq experiments
-
Bullard, J. H., Purdom, E., Hansen, K. D. & Dudoit, S. Evaluation of statistical methods for normalization and differential expression inmRNA-Seq experiments. BMC Bioinformatics 11, 94(2010).
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.H.1
Purdom, E.2
Hansen, K.D.3
Dudoit, S.4
-
66
-
-
84940888089
-
Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis
-
Li, C. M. et al. Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis. Genes Dev. 29, 1850-1862 (2015).
-
(2015)
Genes Dev.
, vol.29
, pp. 1850-1862
-
-
Li, C.M.1
-
67
-
-
84912071423
-
Independent component analysis uncovers the landscape of the bladder tumor transcriptome and reveals insights into luminal and basal subtypes
-
Biton, A. et al. Independent component analysis uncovers the landscape of the bladder tumor transcriptome and reveals insights into luminal and basal subtypes. Cell Rep. 9, 1235-1245 (2014).
-
(2014)
Cell Rep.
, vol.9
, pp. 1235-1245
-
-
Biton, A.1
-
68
-
-
84904504373
-
Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells
-
Lewis, C. A. et al. Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells. Mol. Cell 55, 253-263 (2014).
-
(2014)
Mol. Cell
, vol.55
, pp. 253-263
-
-
Lewis, C.A.1
-
69
-
-
38449111120
-
An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis
-
Young, J. D., Walther, J. L., Antoniewicz, M. R., Yoo, H. & Stephanopoulos, G. An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis. Biotechnol. Bioeng. 99, 686-699 (2008)
-
(2008)
Biotechnol. Bioeng.
, vol.99
, pp. 686-699
-
-
Young, J.D.1
Walther, J.L.2
Antoniewicz, M.R.3
Yoo, H.4
Stephanopoulos, G.5
-
70
-
-
0029664919
-
Correction of 13C mass isotopomer distributions for natural stable isotope abundance
-
Fernandez, C. A., Des Rosiers, C., Previs, S. F., David, F. & Brunengraber, H. Correction of 13C mass isotopomer distributions for natural stable isotope abundance. J. Mass Spectrom. 31, 255-262 (1996).
-
(1996)
J. Mass Spectrom.
, vol.31
, pp. 255-262
-
-
Fernandez, C.A.1
Des Rosiers, C.2
Previs, S.F.3
David, F.4
Brunengraber, H.5
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