-
1
-
-
0035895505
-
The Sequence of the Human Genome
-
Venter JC Reinert K The Sequence of the Human Genome Science 2001, 291:1145-1434.
-
(2001)
Science
, vol.291
, pp. 1145-1434
-
-
Venter, J.C.1
Reinert, K.2
-
2
-
-
0000541351
-
A fast bit-vector algorithm for approximate string matching based on dynamic programming
-
Myers EW A fast bit-vector algorithm for approximate string matching based on dynamic programming Journal of the ACM 1999, 46(3):395-415.
-
(1999)
Journal of the ACM
, vol.46
, Issue.3
, pp. 395-415
-
-
Myers, E.W.1
-
5
-
-
0034708758
-
A Whole-Genome Assembly of Drosophila
-
10731133
-
Myers EW Sutton GG Delcher AL Dew IM Fasulo DP Flanigan MJ Kravitz SA Mobarry CM Reinert KHJ Remington KA Anson EL Bolanos RA Chou HH Jordan CM Halpern AL Lonardi S Beasley EM Brandon RC Chen L Dunn PJ Lai Z Liang Y Nusskern DR Zhan M Zhang Q Zheng X Rubin GM Adams MD Venter JC A Whole-Genome Assembly of Drosophila Science 2000, 287:2196-2204. 10731133
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
Sutton, G.G.2
Delcher, A.L.3
Dew, I.M.4
Fasulo, D.P.5
Flanigan, M.J.6
Kravitz, S.A.7
Mobarry, C.M.8
Reinert, K.H.J.9
Remington, K.A.10
Anson, E.L.11
Bolanos, R.A.12
Chou, H.H.13
Jordan, C.M.14
Halpern, A.L.15
Lonardi, S.16
Beasley, E.M.17
Brandon, R.C.18
Chen, L.19
Dunn, P.J.20
Lai, Z.21
Liang, Y.22
Nusskern, D.R.23
Zhan, M.24
Zhang, Q.25
Zheng, X.26
Rubin, G.M.27
Adams, M.D.28
Venter, J.C.29
more..
-
6
-
-
0037204994
-
A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome
-
12040188
-
Mural RJ Adams MD Myers GW Reinert K A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome Science 2002, 296:1661-1671. 12040188
-
(2002)
Science
, vol.296
, pp. 1661-1671
-
-
Mural, R.J.1
Adams, M.D.2
Myers, G.W.3
Reinert, K.4
-
7
-
-
0037398368
-
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
-
430158 12654723
-
Brudno M Do C Cooper GM Kim MF Davydov E Program NCS Green ED Sidow A Batzoglou S LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA Genome Research 2003, 13(4):721-731. 430158 12654723
-
(2003)
Genome Research
, vol.13
, Issue.4
, pp. 721-731
-
-
Brudno, M.1
Do, C.2
Cooper, G.M.3
Kim, M.F.4
Davydov, E.5
Program, N.C.S.6
Green, E.D.7
Sidow, A.8
Batzoglou, S.9
-
8
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
395750 14759262
-
Kurtz S Phillippy A Delcher AL Smoot M Shumway M Antonescu C Salzberg SL Versatile and open software for comparing large genomes Genome Biology 2004, 5(2):R12. 395750 14759262
-
(2004)
Genome Biology
, vol.5
, Issue.2
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
10
-
-
3543051830
-
Mauve: Multiple Alignment of Conserved Genomic Sequence with Rearrangements
-
442156 15231754
-
Darling A Mau B Blattner F Perna N Mauve: Multiple Alignment of Conserved Genomic Sequence with Rearrangements Genome Research 2004, 14:1394-1403. 442156 15231754
-
(2004)
Genome Research
, vol.14
, pp. 1394-1403
-
-
Darling, A.1
Mau, B.2
Blattner, F.3
Perna, N.4
-
14
-
-
33745955637
-
Bio++: A set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics
-
1501049 16594991
-
Dutheil J Gaillard S Bazin E Glemin S Ranwez V Galtier N Belkhir K Bio++: A set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics BMC Bioinformatics 2006, 7:188. 1501049 16594991
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 188
-
-
Dutheil, J.1
Gaillard, S.2
Bazin, E.3
Glemin, S.4
Ranwez, V.5
Galtier, N.6
Belkhir, K.7
-
15
-
-
25444497721
-
libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny
-
1175080 15938750
-
Butt D Roger AJ Blouin C libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny BMC Bioinformatics 2005, 6:138. 1175080 15938750
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 138
-
-
Butt, D.1
Roger, A.J.2
Blouin, C.3
-
16
-
-
0034847253
-
The Bioinformatics Template Library - Generic components for biocomputing
-
11524374
-
Pitt WR Williams MA Steven M Sweeney B Bleasby AJ Moss DS The Bioinformatics Template Library - generic components for biocomputing Bioinformatics 2001, 17(8):729-737. 11524374
-
(2001)
Bioinformatics
, vol.17
, Issue.8
, pp. 729-737
-
-
Pitt, W.R.1
Williams, M.A.2
Steven, M.3
Sweeney, B.4
Bleasby, A.J.5
Moss, D.S.6
-
17
-
-
84874660408
-
-
[Internet] National Library of Medicine, National Center for Biotechnology Information, Bethesda (MD)
-
Vakatov D Siyan K Ostell J editors The NCBI C++ Toolkit [Internet] National Library of Medicine, National Center for Biotechnology Information, Bethesda (MD) 2003 http://www.ncbi.nlm.nih.gov/books/ bv.fcgi?rid=toolkit
-
(2003)
The NCBI C++ Toolkit
-
-
Vakatov, D.1
Siyan, K.2
Ostell, J.3
-
18
-
-
0030013908
-
Object-oriented sequence analysis: SCL-a C++ class library
-
Vahrson W Hermann K Kleffe J Wittig B Object-oriented sequence analysis: SCL-a C++ class library Bioinformatics 1996, 12(2):119-127.
-
(1996)
Bioinformatics
, vol.12
, Issue.2
, pp. 119-127
-
-
Vahrson, W.1
Hermann, K.2
Kleffe, J.3
Wittig, B.4
-
19
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman SB Wunsch CD A general method applicable to the search for similarities in the amino acid sequence of two proteins J Molecular Biol 1970, 48:443-453.
-
(1970)
J Molecular Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
20
-
-
84886760432
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich J Block D Boulez K Brenner S Chervitz S Dagdigian C Fuellen G Gilbert J Korf I Lapp H Lehvaslaiho H Matsalla C Mungall C Osborne B Pocock M Schattner P Senger M Stein L Stupka E Wilkinson M Birney E The Bioperl toolkit: Perl modules for the life sciences 2002
-
(2002)
-
-
Stajich, J.1
Block, D.2
Boulez, K.3
Brenner, S.4
Chervitz, S.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.8
Korf, I.9
Lapp, H.10
Lehvaslaiho, H.11
Matsalla, C.12
Mungall, C.13
Osborne, B.14
Pocock, M.15
Schattner, P.16
Senger, M.17
Stein, L.18
Stupka, E.19
Wilkinson, M.20
Birney, E.21
more..
-
21
-
-
0011096627
-
BioJava: Open Source Components for Bioinformatics
-
Pocock M Down T Hubbard T BioJava: Open Source Components for Bioinformatics ACM SIGBIO Newsletter 2000, 20(2):10-12.
-
(2000)
ACM SIGBIO Newsletter
, vol.20
, Issue.2
, pp. 10-12
-
-
Pocock, M.1
Down, T.2
Hubbard, T.3
-
26
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
7166760
-
Gotoh O An improved algorithm for matching biological sequences J Mol Biol 1982, 162(3):705-708. 7166760
-
(1982)
J Mol Biol
, vol.162
, Issue.3
, pp. 705-708
-
-
Gotoh, O.1
-
33
-
-
14944363170
-
PatternHunter II: Highly sensitive and fast homology search
-
15706531
-
Li M Ma B Kisman D Tromp J PatternHunter II: Highly sensitive and fast homology search Genome Informatics 2003, 14:164-175. 15706531
-
(2003)
Genome Informatics
, vol.14
, pp. 164-175
-
-
Li, M.1
Ma, B.2
Kisman, D.3
Tromp, J.4
-
35
-
-
0023375195
-
The Neighbor-Joining method: A new method, for reconstructing phylogenetic trees
-
3447015
-
Saitou N Nei M The Neighbor-Joining method: A new method, for reconstructing phylogenetic trees Mol Biol Evol 1987, 4:406-425. 3447015
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
38
-
-
0034623005
-
T-Coffee: A Novel Method for Fast and Accurate Multiple Sequence Alignment
-
10964570
-
Notredame C Higgins D Heringa J T-Coffee: A Novel Method for Fast and Accurate Multiple Sequence Alignment Journal of Molecular Biology 2000, 302:205-217. 10964570
-
(2000)
Journal of Molecular Biology
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
40
-
-
0016518550
-
A linear space algorithm for computing maximal common subsequences
-
Hirschberg DS A linear space algorithm for computing maximal common subsequences ACM Press 1975, 18(6):341-343. 341-343.
-
(1975)
, vol.18
, Issue.6
, pp. 341-343
-
-
Hirschberg, D.S.1
-
43
-
-
3242889975
-
Replacing Suffix Trees with Enhanced Suffix Arrays
-
Abouelhoda M Kurtz S Ohlebusch E Replacing Suffix Trees with Enhanced Suffix Arrays Journal of Discrete Algorithms 2004, 2:53-86. http://www.zbh.uni-hamburg.de/staff/kurtz/papers/AboKurOhl2004.pdf
-
(2004)
Journal of Discrete Algorithms
, vol.2
, pp. 53-86
-
-
Abouelhoda, M.1
Kurtz, S.2
Ohlebusch, E.3
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