-
1
-
-
0015964603
-
Population studies in microorganisms
-
Adams J, Hansche PE. 1974. Population studies in microorganisms. Genetics 76:327-335.
-
(1974)
Genetics
, vol.76
, pp. 327-335
-
-
Adams, J.1
Hansche, P.E.2
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol. 11:R106.
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
3
-
-
0037399053
-
Mode of selection and experimental evolution of antifungal drug resistance in Saccharomyces cerevisiae
-
Anderson JB, Sirjusingh C, Parsons AB, Boone C, Wickens C, Cowen LE, Kohn LM. 2003. Mode of selection and experimental evolution of antifungal drug resistance in Saccharomyces cerevisiae. Genetics 163:1287-1298.
-
(2003)
Genetics
, vol.163
, pp. 1287-1298
-
-
Anderson, J.B.1
Sirjusingh, C.2
Parsons, A.B.3
Boone, C.4
Wickens, C.5
Cowen, L.E.6
Kohn, L.M.7
-
4
-
-
11244294685
-
Haploidy, diploidy and evolution of antifungal drug resistance in Saccharomyces cerevisiae
-
Anderson JB, Sirjusingh C, Ricker N. 2004. Haploidy, diploidy and evolution of antifungal drug resistance in Saccharomyces cerevisiae. Genetics 168:1915-1923.
-
(2004)
Genetics
, vol.168
, pp. 1915-1923
-
-
Anderson, J.B.1
Sirjusingh, C.2
Ricker, N.3
-
5
-
-
0038577154
-
Completion of a parasexual cycle in Candida albicans by induced chromosome loss in tetraploid strains
-
Bennett RJ, Johnson AD. 2003. Completion of a parasexual cycle in Candida albicans by induced chromosome loss in tetraploid strains. EMBO J. 22:2505-2515.
-
(2003)
EMBO J.
, vol.22
, pp. 2505-2515
-
-
Bennett, R.J.1
Johnson, A.D.2
-
6
-
-
84964561931
-
Ploidy plasticity: A rapid and reversible strategy for adaptation to stress
-
Berman J. 2016. Ploidy plasticity: A rapid and reversible strategy for adaptation to stress. FEMS Yeast Res. 16:1-5.
-
(2016)
FEMS Yeast Res.
, vol.16
, pp. 1-5
-
-
Berman, J.1
-
7
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
8
-
-
0031904230
-
Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
-
Brown CJ, Todd KM, Rosenzweig RF. 1998.Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evol. 15:931-942.
-
(1998)
Mol Biol Evol.
, vol.15
, pp. 931-942
-
-
Brown, C.J.1
Todd, K.M.2
Rosenzweig, R.F.3
-
9
-
-
84858588614
-
Saccharomyces Genome Database: The genomics resource of budding yeast
-
Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, et al. 2012. Saccharomyces Genome Database: The genomics resource of budding yeast. Nucleic Acids Res. 40:D700-D705.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D700-D705
-
-
Cherry, J.M.1
Hong, E.L.2
Amundsen, C.3
Balakrishnan, R.4
Binkley, G.5
Chan, E.T.6
Christie, K.R.7
Costanzo, M.C.8
Dwight, S.S.9
Engel, S.R.10
-
10
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, Snp Eff
-
Cingolani P, Platts A, Wang LL, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. 2012. A program for annotating and predicting the effects of single nucleotide polymorphisms, Snp Eff. Fly (Austin) 6:80-92.
-
(2012)
Fly (Austin)
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang, L.L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
Land, S.J.7
Lu, X.8
Ruden, D.M.9
-
11
-
-
0030669755
-
Synthesis of mannose-(inositol-P) 2-ceramide, the major sphingolipid in Saccharomyces cerevisiae, requires the IPT1 (YDR072c) gene
-
Dickson RC, Nagiec EE, Wells GB, Nagiec MM, Lester RL. 1997. Synthesis of mannose-(inositol-P) 2-ceramide, the major sphingolipid in Saccharomyces cerevisiae, requires the IPT1 (YDR072c) gene. Biochemistry 272:29620-29625.
-
(1997)
Biochemistry
, vol.272
, pp. 29620-29625
-
-
Dickson, R.C.1
Nagiec, E.E.2
Wells, G.B.3
Nagiec, M.M.4
Lester, R.L.5
-
12
-
-
84870904073
-
MTH1 and RGT1 demonstrate combined haploinsufficiency in regulation of the hexose transporter genes in Saccharomyces cerevisiae
-
Dietzel KL, Ramakrishnan V, Murphy EE, Bisson LF. 2012. MTH1 and RGT1 demonstrate combined haploinsufficiency in regulation of the hexose transporter genes in Saccharomyces cerevisiae. BMC Genet. 13:107.
-
(2012)
BMC Genet.
, vol.13
, pp. 107
-
-
Dietzel, K.L.1
Ramakrishnan, V.2
Murphy, E.E.3
Bisson, L.F.4
-
13
-
-
0037058930
-
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
-
Dunham MJ, Badrane H, Ferea T, Adams J, Brown PO, Rosenzweig F, Botstein D. 2002. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 99:16144-16149.
-
(2002)
Proc Natl Acad Sci USA.
, vol.99
, pp. 16144-16149
-
-
Dunham, M.J.1
Badrane, H.2
Ferea, T.3
Adams, J.4
Brown, P.O.5
Rosenzweig, F.6
Botstein, D.7
-
14
-
-
84897000131
-
The reference genome sequence of Saccharomyces cerevisiae: Then and now
-
Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, et al. 2014. The reference genome sequence of Saccharomyces cerevisiae: Then and now. G3 Genes Genomes Genet. 4:389-398.
-
(2014)
G3 Genes Genomes Genet.
, vol.4
, pp. 389-398
-
-
Engel, S.R.1
Dietrich, F.S.2
Fisk, D.G.3
Binkley, G.4
Balakrishnan, R.5
Costanzo, M.C.6
Dwight, S.S.7
Hitz, B.C.8
Karra, K.9
Nash, R.S.10
-
15
-
-
84901355368
-
The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations
-
Frenkel EM, Good BH, Desai MM. 2014. The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations. Genetics 196:1217-1226.
-
(2014)
Genetics
, vol.196
, pp. 1217-1226
-
-
Frenkel, E.M.1
Good, B.H.2
Desai, M.M.3
-
16
-
-
27144507868
-
Cytokinesis failure generating tetraploids promotes tumorigenesis in p53-null cells
-
Fujiwara T, Bandi M, Nitta M, Ivanova EV, Bronson RT, Pellman D. 2005. Cytokinesis failure generating tetraploids promotes tumorigenesis in p53-null cells. Nature 437:1043-1047.
-
(2005)
Nature
, vol.437
, pp. 1043-1047
-
-
Fujiwara, T.1
Bandi, M.2
Nitta, M.3
Ivanova, E.V.4
Bronson, R.T.5
Pellman, D.6
-
17
-
-
84946594483
-
Polyploid titan cells produce haploid and aneuploid progeny to promote stress adaptation
-
Gerstein A, Fu M, Mukaremera L, Li Z, Ormerod K, Fraser J, Berman J, Nielsen K. 2015. Polyploid titan cells produce haploid and aneuploid progeny to promote stress adaptation. MBio 6:1-14.
-
(2015)
MBio
, vol.6
, pp. 1-14
-
-
Gerstein, A.1
Fu, M.2
Mukaremera, L.3
Li, Z.4
Ormerod, K.5
Fraser, J.6
Berman, J.7
Nielsen, K.8
-
18
-
-
84872046076
-
Mutational effects depend on ploidy level: All else is not equal
-
Gerstein AC. 2012. Mutational effects depend on ploidy level: All else is not equal. Biol Lett. 9:20120614.
-
(2012)
Biol Lett.
, vol.9
, pp. 20120614
-
-
Gerstein, A.C.1
-
19
-
-
33749420389
-
Genomic convergence toward diploidy in Saccharomyces cerevisiae
-
Gerstein AC, Chun HJE, Grant A, Otto SP. 2006. Genomic convergence toward diploidy in Saccharomyces cerevisiae. PLo S Genet. 2:1396-1401.
-
(2006)
PLo S Genet.
, vol.2
, pp. 1396-1401
-
-
Gerstein, A.C.1
Chun, H.J.E.2
Grant, A.3
Otto, S.P.4
-
22
-
-
69249203618
-
Ploidy and the causes of genomic evolution
-
Gerstein AC, Otto SP. 2009. Ploidy and the causes of genomic evolution. J Hered. 100:571-581.
-
(2009)
J Hered.
, vol.100
, pp. 571-581
-
-
Gerstein, A.C.1
Otto, S.P.2
-
23
-
-
55249096894
-
Comprehensive mass-spectrometrybased proteome quantification of haploid versus diploid yeast
-
de Godoy LMF, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M. 2008. Comprehensive mass-spectrometrybased proteome quantification of haploid versus diploid yeast. Nature 455:1251-1254.
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
De Godoy, L.M.F.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
Hubner, N.C.5
Fröhlich, F.6
Walther, T.C.7
Mann, M.8
-
24
-
-
58149166731
-
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
-
Gresham D, Desai MM, Tucker CM, Jenq HT, Pai D. a, Ward A, De Sevo CG, Botstein D, Dunham MJ. 2008. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLo S Genet. 4:e1000303.
-
(2008)
PLo S Genet.
, vol.4
, pp. e1000303
-
-
Gresham, D.1
Desai, M.M.2
Tucker, C.M.3
Jenq, H.T.4
Pai, D.A.5
Ward, A.6
De Sevo, C.G.7
Botstein, D.8
Dunham, M.J.9
-
25
-
-
0031800748
-
Mot3, a Zn finger transcription factor that modulates gene expression and attenuates mating pheromone signaling in Saccharomyces cerevisiae
-
Grishin AV, Rothenberg M, Downs MA, Blumer KJ. 1998. Mot3, a Zn finger transcription factor that modulates gene expression and attenuates mating pheromone signaling in Saccharomyces cerevisiae. Genetics 149:879-892.
-
(1998)
Genetics
, vol.149
, pp. 879-892
-
-
Grishin, A.V.1
Rothenberg, M.2
Downs, M.A.3
Blumer, K.J.4
-
26
-
-
84857097463
-
Prions are a common mechanism for phenotypic inheritance in wild yeasts
-
Halfmann R, Jarosz DF, Jones SK, Chang A, Lancaster AK, Lindquist S. 2012. Prions are a common mechanism for phenotypic inheritance in wild yeasts. Nature 482:363-368.
-
(2012)
Nature
, vol.482
, pp. 363-368
-
-
Halfmann, R.1
Jarosz, D.F.2
Jones, S.K.3
Chang, A.4
Lancaster, A.K.5
Lindquist, S.6
-
27
-
-
0035968336
-
Coordinate control of sphingolipid biosynthesis and multidrug resistance in Saccharomyces cerevisiae
-
Hallstrom TC, Lambert L, Schorling S, Balzi E, Goffeau A, Moye-Rowley WS. 2001. Coordinate control of sphingolipid biosynthesis and multidrug resistance in Saccharomyces cerevisiae. J Biol Chem. 276:23674-23680.
-
(2001)
J Biol Chem.
, vol.276
, pp. 23674-23680
-
-
Hallstrom, T.C.1
Lambert, L.2
Schorling, S.3
Balzi, E.4
Goffeau, A.5
Moye-Rowley, W.S.6
-
28
-
-
84898956673
-
A tetraploid intermediate precedes aneuploid formation in yeasts exposed to fluconazole
-
Harrison BD, Hashemi J, Bibi M, Pulver R, Bavli D, Nahmias Y, Wellington M, Sapiro G, Berman J. 2014. A tetraploid intermediate precedes aneuploid formation in yeasts exposed to fluconazole. PLo S Biol. 12:e1001815.
-
(2014)
PLo S Biol.
, vol.12
, pp. e1001815
-
-
Harrison, B.D.1
Hashemi, J.2
Bibi, M.3
Pulver, R.4
Bavli, D.5
Nahmias, Y.6
Wellington, M.7
Sapiro, G.8
Berman, J.9
-
29
-
-
84875740522
-
Heritable remodeling of yeast multicellularity by an environmentally responsive prion
-
Holmes DL, Lancaster AK, Lindquist S, Halfmann R. 2013. Heritable remodeling of yeast multicellularity by an environmentally responsive prion. Cell 153:153-165.
-
(2013)
Cell
, vol.153
, pp. 153-165
-
-
Holmes, D.L.1
Lancaster, A.K.2
Lindquist, S.3
Halfmann, R.4
-
30
-
-
84893817979
-
Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments
-
Hong J, Gresham D. 2014. Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments. PLo S Genet. 10:e1004041.
-
(2014)
PLo S Genet.
, vol.10
, pp. e1004041
-
-
Hong, J.1
Gresham, D.2
-
31
-
-
0036683476
-
Mot3 is a transcriptional repressor of ergosterol biosynthesis genes and is required for normal vacuolar function in Saccharomyces cerevisiae
-
Hongay C, Jia N, Bard M, Winston F. 2002. Mot3 is a transcriptional repressor of ergosterol biosynthesis genes and is required for normal vacuolar function in Saccharomyces cerevisiae. EMBO J. 21:4114-4124.
-
(2002)
EMBO J.
, vol.21
, pp. 4114-4124
-
-
Hongay, C.1
Jia, N.2
Bard, M.3
Winston, F.4
-
32
-
-
71749085460
-
Polyploidy and genome restructuring: A variety of outcomes
-
Hufton AL, Panopoulou G. 2009. Polyploidy and genome restructuring: A variety of outcomes. Curr Opin Genet Dev. 19:600-606.
-
(2009)
Curr Opin Genet Dev.
, vol.19
, pp. 600-606
-
-
Hufton, A.L.1
Panopoulou, G.2
-
33
-
-
56749107039
-
Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
-
Kao KC, Sherlock G. 2008. Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat Genet. 40:1499-1504.
-
(2008)
Nat Genet.
, vol.40
, pp. 1499-1504
-
-
Kao, K.C.1
Sherlock, G.2
-
34
-
-
84864427224
-
Is more better Polyploidy and parasite resistance
-
King KC, Seppala O, Neiman M. 2012. Is more better Polyploidy and parasite resistance. Biol Lett. 8:598-600.
-
(2012)
Biol Lett.
, vol.8
, pp. 598-600
-
-
King, K.C.1
Seppala, O.2
Neiman, M.3
-
35
-
-
0032948292
-
Unpredictable fitness transitions between haploid and diploid strains of the genetically loaded yeast Saccharomyces cerevisiae
-
Korona R. 1999. Unpredictable fitness transitions between haploid and diploid strains of the genetically loaded yeast Saccharomyces cerevisiae. Genetics 151:77-85.
-
(1999)
Genetics
, vol.151
, pp. 77-85
-
-
Korona, R.1
-
36
-
-
84879061636
-
Improved use of a public good selects for the evolution of undifferentiated multicellularity
-
Koschwanez JH, Foster KR, Murray AW. 2013. Improved use of a public good selects for the evolution of undifferentiated multicellularity. Elife 2013:1-27.
-
(2013)
Elife
, vol.2013
, pp. 1-27
-
-
Koschwanez, J.H.1
Foster, K.R.2
Murray, A.W.3
-
37
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh a, Larsson B, von Heijne G, Sonnhammer E. 2001. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J Mol Biol. 305:567-580.
-
(2001)
J Mol Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.4
-
38
-
-
79955590028
-
Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
-
Kvitek DJ, Sherlock G. 2011. Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape. PLo S Genet. 7:e1002056.
-
(2011)
PLo S Genet.
, vol.7
, pp. e1002056
-
-
Kvitek, D.J.1
Sherlock, G.2
-
39
-
-
84888213196
-
Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
-
Kvitek DJ, Sherlock G. 2013. Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLo S Genet. 9:e1003972.
-
(2013)
PLo S Genet.
, vol.9
, pp. e1003972
-
-
Kvitek, D.J.1
Sherlock, G.2
-
40
-
-
84883132678
-
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
-
Lang GI, Rice DP, Hickman MJ, Sodergren E, Weinstock GM, Botstein D, Desai MM. 2013. Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature 500:571-574.
-
(2013)
Nature
, vol.500
, pp. 571-574
-
-
Lang, G.I.1
Rice, D.P.2
Hickman, M.J.3
Sodergren, E.4
Weinstock, G.M.5
Botstein, D.6
Desai, M.M.7
-
41
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357-359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
42
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
Levin JZ, Yassour M, Adiconis X, Nusbaum C, Thompson DA, Friedman N, Gnirke A, Regev A. 2010. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat Methods 7:709-715.
-
(2010)
Nat Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
Yassour, M.2
Adiconis, X.3
Nusbaum, C.4
Thompson, D.A.5
Friedman, N.6
Gnirke, A.7
Regev, A.8
-
43
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
44
-
-
0025818026
-
Dominant and recessive suppressors that restore glucose transport in a yeast snf3 mutant
-
Marshall-Carlson L, Neigeborn L, Coons D, Bisson L, Carlson M. 1991. Dominant and recessive suppressors that restore glucose transport in a yeast snf3 mutant. Genetics 128:505-512.
-
(1991)
Genetics
, vol.128
, pp. 505-512
-
-
Marshall-Carlson, L.1
Neigeborn, L.2
Coons, D.3
Bisson, L.4
Carlson, M.5
-
45
-
-
0025007652
-
High levels of chromosome instability in polyploids of Saccharomyces cerevisiae
-
Mayer VW, Aguilera A. 1990. High levels of chromosome instability in polyploids of Saccharomyces cerevisiae. Mutat Res. 231:177-186.
-
(1990)
Mutat Res.
, vol.231
, pp. 177-186
-
-
Mayer, V.W.1
Aguilera, A.2
-
46
-
-
84962184062
-
Different facets of copy number changes: Permanent, transient, and adaptive
-
Mishra S, Whetstine JR. 2016. Different facets of copy number changes: Permanent, transient, and adaptive.Mol Cell Biol. 36:1050-1063.
-
(2016)
Mol Cell Biol.
, vol.36
, pp. 1050-1063
-
-
Mishra, S.1
Whetstine, J.R.2
-
47
-
-
84935843101
-
Extrachromosomal circular DNA is common in yeast
-
Møller HD, Parsons L, Jørgensen TS, Botstein D, Regenberg B. 2015. Extrachromosomal circular DNA is common in yeast. Proc Natl Acad Sci USA. 112:E3114-E3122.
-
(2015)
Proc Natl Acad Sci USA.
, vol.112
, pp. E3114-E3122
-
-
Møller, H.D.1
Parsons, L.2
Jørgensen, T.S.3
Botstein, D.4
Regenberg, B.5
-
48
-
-
67649836352
-
Microsatellite analysis of genetic diversity among clinical and nonclinical Saccharomyces cerevisiae isolates suggests heterozygote advantage in clinical environments
-
Muller LAH, Mc Cusker JH. 2009. Microsatellite analysis of genetic diversity among clinical and nonclinical Saccharomyces cerevisiae isolates suggests heterozygote advantage in clinical environments. Mol Ecol. 18:2779-2786.
-
(2009)
Mol Ecol.
, vol.18
, pp. 2779-2786
-
-
Muller, L.A.H.1
Mc Cusker, J.H.2
-
49
-
-
0028224163
-
Does diploidy increase the rate of adaptation
-
Orr HA, Otto SP. 1994. Does diploidy increase the rate of adaptation Genetics 136:1475-1480.
-
(1994)
Genetics
, vol.136
, pp. 1475-1480
-
-
Orr, H.A.1
Otto, S.P.2
-
50
-
-
35548954250
-
The evolutionary consequences of polyploidy
-
Otto SP. 2007. The evolutionary consequences of polyploidy. Cell 131:452-462.
-
(2007)
Cell
, vol.131
, pp. 452-462
-
-
Otto, S.P.1
-
51
-
-
0034500239
-
Polyploid incidence and evolution
-
Otto SP, Whitton J. 2000. Polyploid incidence and evolution. Annu Rev Genet. 34:401-437.
-
(2000)
Annu Rev Genet.
, vol.34
, pp. 401-437
-
-
Otto, S.P.1
Whitton, J.2
-
52
-
-
0029864499
-
Two glucose transporters in Saccharomyces cerevisiae are glucose sensors that generate a signal for induction of gene expression
-
Ozcan S, Dover J, Rosenwald AG, Wölfl S, Johnston M. 1996. Two glucose transporters in Saccharomyces cerevisiae are glucose sensors that generate a signal for induction of gene expression. Proc Natl Acad Sci USA. 93:12428-12432.
-
(1996)
Proc Natl Acad Sci USA.
, vol.93
, pp. 12428-12432
-
-
Ozcan, S.1
Dover, J.2
Rosenwald, A.G.3
Wölfl, S.4
Johnston, M.5
-
53
-
-
0028872732
-
Three different regulatory mechanisms enable yeast hexose transporter (HXT) genes to be induced by different levels of glucose
-
Ozcan S, Johnston M. 1995. Three different regulatory mechanisms enable yeast hexose transporter (HXT) genes to be induced by different levels of glucose.Mol Cell Biol. 15:1564-1572.
-
(1995)
Mol Cell Biol.
, vol.15
, pp. 1564-1572
-
-
Ozcan, S.1
Johnston, M.2
-
54
-
-
0032865543
-
Function and regulation of yeast hexose transporters
-
Ozcan S, Johnston M. 1999. Function and regulation of yeast hexose transporters. Microbiol Mol Biol Rev. 63:554-569.
-
(1999)
Microbiol Mol Biol Rev.
, vol.63
, pp. 554-569
-
-
Ozcan, S.1
Johnston, M.2
-
55
-
-
80051751651
-
Ploidy influences rarity and invasiveness in plants
-
Pandit MK, Pocock MJO, Kunin WE. 2011. Ploidy influences rarity and invasiveness in plants. J Ecol. 99:1108-1115.
-
(2011)
J Ecol.
, vol.99
, pp. 1108-1115
-
-
Pandit, M.K.1
Pocock, M.J.O.2
Kunin, W.E.3
-
56
-
-
0020640576
-
Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations
-
Paquin C, Adams J. 1983. Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations. Nature 302:495-500.
-
(1983)
Nature
, vol.302
, pp. 495-500
-
-
Paquin, C.1
Adams, J.2
-
57
-
-
84994201617
-
High-throughput identification of adaptivemutations in experimentally evolved yeast populations
-
Payen C, Sunshine AB, Ong GT, Pogachar JL, Zhao W, Dunham MJ. 2016. High-throughput identification of adaptivemutations in experimentally evolved yeast populations. PLOS Genet. 12:e1006339.
-
(2016)
PLOS Genet.
, vol.12
, pp. e1006339
-
-
Payen, C.1
Sunshine, A.B.2
Ong, G.T.3
Pogachar, J.L.4
Zhao, W.5
Dunham, M.J.6
-
58
-
-
70349325524
-
The evolutionary significance of ancient genome duplications
-
Van de Peer Y, Maere S, Meyer A. 2009. The evolutionary significance of ancient genome duplications. Nat Rev Genet. 10:725-732.
-
(2009)
Nat Rev Genet.
, vol.10
, pp. 725-732
-
-
Van De Peer, Y.1
Maere, S.2
Meyer, A.3
-
59
-
-
15544364487
-
How the Rgt1 transcription factor of Saccharomyces cerevisiae is regulated by glucose
-
Polish J. a, Kim J-H, Johnston M. 2005. How the Rgt1 transcription factor of Saccharomyces cerevisiae is regulated by glucose. Genetics 169:583-594.
-
(2005)
Genetics
, vol.169
, pp. 583-594
-
-
Polish, J.A.1
Kim, J.-H.2
Johnston, M.3
-
60
-
-
56349088536
-
Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor
-
Rancati G, Pavelka N, Fleharty B, Noll A, Trimble R, Walton K, Perera A, Staehling-Hampton K, Seidel CW, Li R. 2008. Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor. Cell 135:879-893.
-
(2008)
Cell
, vol.135
, pp. 879-893
-
-
Rancati, G.1
Pavelka, N.2
Fleharty, B.3
Noll, A.4
Trimble, R.5
Walton, K.6
Perera, A.7
Staehling-Hampton, K.8
Seidel, C.W.9
Li, R.10
-
61
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser JM, Shea EKO. 2006. Control of stochasticity in eukaryotic gene expression. Science 304:1811-1814.
-
(2006)
Science
, vol.304
, pp. 1811-1814
-
-
Raser, J.M.1
Shea, E.K.O.2
-
62
-
-
70350367853
-
Asymmetric signal transduction through paralogs that comprise a genetic switch for sugar sensing in Saccharomyces cerevisiae
-
Sabina J, Johnston M. 2009. Asymmetric signal transduction through paralogs that comprise a genetic switch for sugar sensing in Saccharomyces cerevisiae. J Biol Chem. 284:29635-29643.
-
(2009)
J Biol Chem.
, vol.284
, pp. 29635-29643
-
-
Sabina, J.1
Johnston, M.2
-
63
-
-
0033986343
-
The HTR1 gene is a dominant negative mutant allele of MTH1 and blocks Snf3-A nd Rgt2-dependent glucose signaling in yeast
-
Schulte F, Wieczorke R, Hollenberg CP, Boles E. 2000. The HTR1 gene is a dominant negative mutant allele of MTH1 and blocks Snf3-A nd Rgt2-dependent glucose signaling in yeast. J Bacteriol. 182:540-542.
-
(2000)
J Bacteriol.
, vol.182
, pp. 540-542
-
-
Schulte, F.1
Wieczorke, R.2
Hollenberg, C.P.3
Boles, E.4
-
64
-
-
84979905215
-
Heterozygote advantage is a common outcome of adaptation in Saccharomyces cerevisiae
-
Sellis D, Kvitek DJ, Dunn B, Sherlock G, Petrov DA. 2016. Heterozygote advantage is a common outcome of adaptation in Saccharomyces cerevisiae. Genetics 203:1401-1413.
-
(2016)
Genetics
, vol.203
, pp. 1401-1413
-
-
Sellis, D.1
Kvitek, D.J.2
Dunn, B.3
Sherlock, G.4
Petrov, D.A.5
-
65
-
-
84925009217
-
Polyploidy can drive rapid adaptation in yeast
-
Selmecki AM, Maruvka YE, Richmond PA, Guillet M, Shoresh N, Sorenson AL, De S, Kishony R, Michor F, Dowell R, et al. 2015. Polyploidy can drive rapid adaptation in yeast. Nature 519:349-352.
-
(2015)
Nature
, vol.519
, pp. 349-352
-
-
Selmecki, A.M.1
Maruvka, Y.E.2
Richmond, P.A.3
Guillet, M.4
Shoresh, N.5
Sorenson, A.L.6
De S Kishony, R.7
Michor, F.8
Dowell, R.9
-
66
-
-
36549038087
-
Consequences of genome duplication
-
Sémon M, Wolfe KH. 2007. Consequences of genome duplication. Curr Opin Genet Dev. 17:505-512.
-
(2007)
Curr Opin Genet Dev.
, vol.17
, pp. 505-512
-
-
Sémon, M.1
Wolfe, K.H.2
-
67
-
-
84904817542
-
The polyploidy revolution then and now: Stebbins revisited
-
Soltis DE, Visger CJ, Soltis PS. 2014. The polyploidy revolution then and now: Stebbins revisited. Am J Bot. 101:1057-1078.
-
(2014)
Am J Bot.
, vol.101
, pp. 1057-1078
-
-
Soltis, D.E.1
Visger, C.J.2
Soltis, P.S.3
-
68
-
-
0007631972
-
The significance of polyploidy in plant evolution
-
Stebbins GL. 1940. The significance of polyploidy in plant evolution. Am Nat. 74:54-66.
-
(1940)
Am Nat.
, vol.74
, pp. 54-66
-
-
Stebbins, G.L.1
-
69
-
-
85027924576
-
Ploidy changes and genome stability in yeast
-
Storchova Z. 2014. Ploidy changes and genome stability in yeast. Yeast 31:421-430.
-
(2014)
Yeast
, vol.31
, pp. 421-430
-
-
Storchova, Z.1
-
70
-
-
33749506269
-
Genome-wide genetic analysis of polyploidy in yeast
-
Storchov-a Z, Breneman A, Cande J, Dunn J, Burbank K, O'toole E, Pellman D. 2006. Genome-wide genetic analysis of polyploidy in yeast. Nature 443:541-547.
-
(2006)
Nature
, vol.443
, pp. 541-547
-
-
Storchova, Z.1
Breneman, A.2
Cande, J.3
Dunn, J.4
Burbank O'Toole Pellman, E.K.D.5
-
71
-
-
0034903337
-
In vivo site-directed mutagenesis using oligonucleotides
-
Storici F, Lewis LK, Resnick MA. 2001. In vivo site-directed mutagenesis using oligonucleotides. Nat Biotechnol. 19:773-776.
-
(2001)
Nat Biotechnol.
, vol.19
, pp. 773-776
-
-
Storici, F.1
Lewis, L.K.2
Resnick, M.A.3
-
72
-
-
84983319615
-
Rapid evolutionary adaptation to growth on an unfamiliar" carbon source
-
Tamari Z, Yona AH, Pilpel Y, Barkai N, Airoldi E, Huttenhower C, Gresham D, Lu C, Caudy A, Dunham M, et al. 2016. Rapid evolutionary adaptation to growth on an "unfamiliar" carbon source. BMC Genomics 17:674.
-
(2016)
BMC Genomics
, vol.17
, pp. 674
-
-
Tamari, Z.1
Yona, A.H.2
Pilpel, Y.3
Barkai, N.4
Airoldi, E.5
Huttenhower, C.6
Gresham, D.7
Lu, C.8
Caudy, A.9
Dunham, M.10
-
73
-
-
33747153121
-
Ploidy controls the success of mutators and nature of mutations during budding yeast evolution
-
Thompson DA, Desai MM, Murray AW. 2006. Ploidy controls the success of mutators and nature of mutations during budding yeast evolution. Curr Biol. 16:1581-1590.
-
(2006)
Curr Biol.
, vol.16
, pp. 1581-1590
-
-
Thompson, D.A.1
Desai, M.M.2
Murray, A.W.3
-
74
-
-
34548131710
-
Effects of aneuploidy on cellular physiology and cell division in haploid yeast
-
Torres EM, Sokolsky T, Tucker CM, Chan LY, Boselli M, Dunham MJ, Amon A. 2007. Effects of aneuploidy on cellular physiology and cell division in haploid yeast. Science 317:916-924.
-
(2007)
Science
, vol.317
, pp. 916-924
-
-
Torres, E.M.1
Sokolsky, T.2
Tucker, C.M.3
Chan, L.Y.4
Boselli, M.5
Dunham, M.J.6
Amon, A.7
-
75
-
-
84986301161
-
Development of a comprehensive genotype-to-fitness map of adaptation-driving mutations in yeast
-
Venkataram S, Dunn B, Li Y, Agarwala A, Chang J, Ebel ER, Geiler-Samerotte K, Hérissant L, Blundell JR, Levy SF, et al. 2016. Development of a comprehensive genotype-to-fitness map of adaptation-driving mutations in yeast. Cell 166:1585-1596.
-
(2016)
Cell
, vol.166
, pp. 1585-1596
-
-
Venkataram, S.1
Dunn, B.2
Li, Y.3
Agarwala, A.4
Chang, J.5
Ebel, E.R.6
Geiler-Samerotte, K.7
Hérissant, L.8
Blundell, J.R.9
Levy, S.F.10
-
76
-
-
84949310228
-
Adaptation to high ethanol reveals complex evolutionary pathways
-
Voordeckers K, Kominek J, Das A, Espinosa-Cant-u A, De Maeyer D, Arslan A, Van Pee M, van der Zande E, Meert W, Yang Y, et al. 2015. Adaptation to high ethanol reveals complex evolutionary pathways. PLOS Genet. 11:e1005635.
-
(2015)
PLOS Genet.
, vol.11
, pp. e1005635
-
-
Voordeckers, K.1
Kominek, J.2
Das, A.3
Espinosa-Cant-U, A.4
De Maeyer, D.5
Arslan, A.6
Van Pee, M.7
Van Der Zande, E.8
Meert, W.9
Yang, Y.10
-
77
-
-
80052324811
-
Hunger artists: Yeast adapted to carbon limitation show trade-offs under carbon sufficiency
-
Wenger JW, Piotrowski J, Nagarajan S, Chiotti K, Sherlock G, Rosenzweig F. 2011. Hunger artists: Yeast adapted to carbon limitation show trade-offs under carbon sufficiency. PLo S Genet. 7:e1002202.
-
(2011)
PLo S Genet.
, vol.7
, pp. e1002202
-
-
Wenger, J.W.1
Piotrowski, J.2
Nagarajan, S.3
Chiotti, K.4
Sherlock, G.5
Rosenzweig, F.6
-
79
-
-
84871375832
-
Chromosomal duplication is a transient evolutionary solution to stress
-
Yona AH, Manor YS, Herbst RH, Romano GH, Mitchell A, Kupiec M, Pilpel Y, Dahan O. 2012. Chromosomal duplication is a transient evolutionary solution to stress. Proc Natl Acad Sci USA. 109:21010-21015.
-
(2012)
Proc Natl Acad Sci USA.
, vol.109
, pp. 21010-21015
-
-
Yona, A.H.1
Manor, Y.S.2
Herbst, R.H.3
Romano, G.H.4
Mitchell, A.5
Kupiec, M.6
Pilpel, Y.7
Dahan, O.8
-
80
-
-
84885008220
-
Pan-cancer patterns of somatic copy number alteration
-
Zack TI, Schumacher SE, Carter SL, Cherniack AD, Saksena G, Tabak B, Lawrence MS, Zhang C-Z, Wala J, Mermel CH, et al. 2013. Pan-cancer patterns of somatic copy number alteration. Nat Genet. 45:1134-1140.
-
(2013)
Nat Genet.
, vol.45
, pp. 1134-1140
-
-
Zack, T.I.1
Schumacher, S.E.2
Carter, S.L.3
Cherniack, A.D.4
Saksena, G.5
Tabak, B.6
Lawrence, M.S.7
Zhang, C.-Z.8
Wala, J.9
Mermel, C.H.10
-
81
-
-
84882918753
-
Titan cells in Cryptococcus neoformans: Cells with a giant impact
-
Zaragoza O, Nielsen K. 2013. Titan cells in Cryptococcus neoformans: Cells with a giant impact. Curr Opin Microbiol. 16:409-413.
-
(2013)
Curr Opin Microbiol.
, vol.16
, pp. 409-413
-
-
Zaragoza, O.1
Nielsen, K.2
-
82
-
-
1842425679
-
Experimental studies of ploidy evolution in yeast
-
Zeyl C. 2004. Experimental studies of ploidy evolution in yeast. FEMS Microbiol Lett. 233:187-192.
-
(2004)
FEMS Microbiol Lett.
, vol.233
, pp. 187-192
-
-
Zeyl, C.1
-
83
-
-
0037462494
-
An evolutionary advantage of haploidy in large yeast populations
-
Zeyl C, Vanderford T, Carter M. 2003. An evolutionary advantage of haploidy in large yeast populations. Science 299:555-558.
-
(2003)
Science
, vol.299
, pp. 555-558
-
-
Zeyl, C.1
Vanderford, T.2
Carter, M.3
-
84
-
-
84983681720
-
Whole genome analysis of 132 clinical Saccharomyces cerevisiae strains reveals extensive ploidy variation
-
Zhu YO, Sherlock G, Petrov DA. 2016. Whole genome analysis of 132 clinical Saccharomyces cerevisiae strains reveals extensive ploidy variation. G3 Genes Genomes Genet. 6:2421-2434.
-
(2016)
G3 Genes Genomes Genet.
, vol.6
, pp. 2421-2434
-
-
Zhu, Y.O.1
Sherlock, G.2
Petrov, D.A.3
-
85
-
-
84875992955
-
Ancient evolutionary trade-offs between yeast ploidy states
-
Zörgö E, Chwialkowska K, Gjuvsland AB, Garré E, Sunnerhagen P, Liti G, Blomberg A, Omholt SW, Warringer J. 2013. Ancient evolutionary trade-offs between yeast ploidy states. PLo S Genet. 9:e1003388.
-
(2013)
PLo S Genet.
, vol.9
, pp. e1003388
-
-
Zörgö, E.1
Chwialkowska, K.2
Gjuvsland, A.B.3
Garré, E.4
Sunnerhagen, P.5
Liti, G.6
Blomberg, A.7
Omholt, S.W.8
Warringer, J.9
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