-
1
-
-
79953735688
-
Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster
-
21437274,.; ():.
-
Turner TL, Stewart AD, Fields AT, Rice WR, Tarone AM, Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster. PLoS Genet. 2011;7(3):e1001336. doi: 10.1371/journal.pgen.100133621437274
-
(2011)
PLoS Genet
, vol.7
, Issue.3
, pp. e1001336
-
-
Turner, T.L.1
Stewart, A.D.2
Fields, A.T.3
Rice, W.R.4
Tarone, A.M.5
-
2
-
-
84883132678
-
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
-
23873039,..
-
Lang GI, Rice DP, Hickman MJ, Sodergren E, Weinstock GM, Botstein D, et al. Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature. 2013. doi: 10.1038/nature1234423873039
-
(2013)
Nature
-
-
Lang, G.I.1
Rice, D.P.2
Hickman, M.J.3
Sodergren, E.4
Weinstock, G.M.5
Botstein, D.6
-
3
-
-
84888213196
-
Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
-
24278038,.; ():.
-
Kvitek D, Sherlock G, Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLoS Genet. 2013;9(11):e1003972. doi: 10.1371/journal.pgen.100397224278038
-
(2013)
PLoS Genet
, vol.9
, Issue.11
, pp. e1003972
-
-
Kvitek, D.1
Sherlock, G.2
-
4
-
-
84893817979
-
Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments
-
24415948,.; ():.
-
Hong J, Gresham D, Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments. PLoS Genet. 2014;10(1):e1004041. doi: 10.1371/journal.pgen.100404124415948
-
(2014)
PLoS Genet
, vol.10
, Issue.1
, pp. e1004041
-
-
Hong, J.1
Gresham, D.2
-
5
-
-
84901824457
-
Precise estimates of mutation rate and spectrum in yeast
-
24847077,. 2014;; (): –.
-
Zhu YO, Siegal ML, Hall DW, Petrov DA, Precise estimates of mutation rate and spectrum in yeast. Proc Natl Acad Sci U S A. 2014;2014Jun3;111(22):E2310–8. doi: 10.1073/pnas.132301111124847077
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.22
, pp. E2310-E2318
-
-
Zhu, Y.O.1
Siegal, M.L.2
Hall, D.W.3
Petrov, D.A.4
-
6
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
19838166,..; (): –.
-
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature. 2009;461(7268):1243–7. doi: 10.1038/nature0848019838166
-
(2009)
Nature
, vol.461
, Issue.7268
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
Schneider, D.6
-
7
-
-
84876437630
-
Synchronous waves of failed soft sweeps in the laboratory: remarkably rampant clonal interference of alleles at a single locus
-
23307898,.; (): –.
-
Lee MC, Marx CJ, Synchronous waves of failed soft sweeps in the laboratory: remarkably rampant clonal interference of alleles at a single locus. Genetics. 2013;193(3):943–52. doi: 10.1534/genetics.112.14850223307898
-
(2013)
Genetics
, vol.193
, Issue.3
, pp. 943-952
-
-
Lee, M.C.1
Marx, C.J.2
-
8
-
-
56749107039
-
Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
-
19029899,.; (): –.
-
Kao KC, Sherlock G, Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat Genet. 2008;40(12):1499–504. doi: 10.1038/ng.28019029899
-
(2008)
Nat Genet
, vol.40
, Issue.12
, pp. 1499-1504
-
-
Kao, K.C.1
Sherlock, G.2
-
9
-
-
84856258903
-
The molecular diversity of adaptive convergence
-
22282810,..; (): –.
-
Tenaillon O, Rodriguez-Verdugo A, Gaut RL, McDonald P, Bennett AF, Long AD, et al. The molecular diversity of adaptive convergence. Science. 2012;335(6067):457–61. doi: 10.1126/science.121298622282810
-
(2012)
Science
, vol.335
, Issue.6067
, pp. 457-461
-
-
Tenaillon, O.1
Rodriguez-Verdugo, A.2
Gaut, R.L.3
McDonald, P.4
Bennett, A.F.5
Long, A.D.6
-
10
-
-
84874535714
-
Parallel evolutionary dynamics of adaptive diversification in Escherichia coli
-
23431270,.; ():.
-
Herron MD, Doebeli M, Parallel evolutionary dynamics of adaptive diversification in Escherichia coli. PLoS Biol. 2013;11(2):e1001490. doi: 10.1371/journal.pbio.100149023431270
-
(2013)
PLoS Biol
, vol.11
, Issue.2
, pp. e1001490
-
-
Herron, M.D.1
Doebeli, M.2
-
11
-
-
0031904230
-
Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
-
9718721,.; (): –.
-
Brown CJ, Todd KM, Rosenzweig RF, Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evol. 1998;15(8):931–42. doi: 10.1093/oxfordjournals.molbev.a0260099718721
-
(1998)
Mol Biol Evol
, vol.15
, Issue.8
, pp. 931-942
-
-
Brown, C.J.1
Todd, K.M.2
Rosenzweig, R.F.3
-
12
-
-
2142769136
-
Mefloquine resistance in Plasmodium falciparum and increased pfmdr1 gene copy number
-
15288742,..; (): –.
-
Price RN, Uhlemann AC, Brockman A, McGready R, Ashley E, Phaipun L, et al. Mefloquine resistance in Plasmodium falciparum and increased pfmdr1 gene copy number. Lancet. 2004;364(9432):438–47. doi: 10.1016/s0140-6736(04)16767-615288742
-
(2004)
Lancet
, vol.364
, Issue.9432
, pp. 438-447
-
-
Price, R.N.1
Uhlemann, A.C.2
Brockman, A.3
McGready, R.4
Ashley, E.5
Phaipun, L.6
-
13
-
-
0037058930
-
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
-
12446845,..; (): –.
-
Dunham MJ, Badrane H, Ferea T, Adams J, Brown PO, Rosenzweig F, et al. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002;99(25):16144–9. doi: 10.1073/pnas.24262479912446845
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.25
, pp. 16144-16149
-
-
Dunham, M.J.1
Badrane, H.2
Ferea, T.3
Adams, J.4
Brown, P.O.5
Rosenzweig, F.6
-
14
-
-
84866944595
-
Genomic analysis of a key innovation in an experimental Escherichia coli population
-
22992527,.; (): –.
-
Blount ZD, Barrick JE, Davidson CJ, Lenski RE, Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature. 2012;489(7417):513–8. doi: 10.1038/nature1151422992527
-
(2012)
Nature
, vol.489
, Issue.7417
, pp. 513-518
-
-
Blount, Z.D.1
Barrick, J.E.2
Davidson, C.J.3
Lenski, R.E.4
-
15
-
-
0030620273
-
Evolution of high mutation rates in experimental populations of E. coli
-
9192894,.; (): –.
-
Sniegowski PD, Gerrish PJ, Lenski RE, Evolution of high mutation rates in experimental populations of E. coli. Nature. 1997;387(6634):703–5. 9192894
-
(1997)
Nature
, vol.387
, Issue.6634
, pp. 703-705
-
-
Sniegowski, P.D.1
Gerrish, P.J.2
Lenski, R.E.3
-
16
-
-
84866065759
-
Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeast
-
22714405,.; (): –.
-
Gerstein AC, Lo DS, Otto SP, Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeast. Genetics. 2012;192(1):241–52. doi: 10.1534/genetics.112.14262022714405
-
(2012)
Genetics
, vol.192
, Issue.1
, pp. 241-252
-
-
Gerstein, A.C.1
Lo, D.S.2
Otto, S.P.3
-
17
-
-
70349690200
-
Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation
-
19763169,.; ():.
-
Chou HH, Berthet J, Marx CJ, Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation. PLoS Genet. 2009;5(9):e1000652. doi: 10.1371/journal.pgen.100065219763169
-
(2009)
PLoS Genet
, vol.5
, Issue.9
, pp. e1000652
-
-
Chou, H.H.1
Berthet, J.2
Marx, C.J.3
-
18
-
-
79955590028
-
Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
-
21552329,.; ():.
-
Kvitek DJ, Sherlock G, Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape. PLoS Genet. 2011;7(4):e1002056. doi: 10.1371/journal.pgen.100205621552329
-
(2011)
PLoS Genet
, vol.7
, Issue.4
, pp. e1002056
-
-
Kvitek, D.J.1
Sherlock, G.2
-
19
-
-
84930668371
-
The fitness consequences of aneuploidy are driven by condition-dependent gene effects
-
26011532,.; ():.
-
Sunshine AB Payen C, Ong GT, Liachko I, Tan KM, Dunham MJ, The fitness consequences of aneuploidy are driven by condition-dependent gene effects. PLoS Biology. 2015;13(5):e1002155. doi: 10.1371/journal.pbio.100215526011532
-
(2015)
PLoS Biology
, vol.13
, Issue.5
, pp. e1002155
-
-
Sunshine, A.B.1
Payen, C.2
Ong, G.T.3
Liachko, I.4
Tan, K.M.5
Dunham, M.J.6
-
20
-
-
84964937674
-
An extended set of yeast-based functional assays accurately identifies human disease mutations
-
26975778,..; (): –.
-
Sun S, Yang F, Tan G, Costanzo M, Oughtred R, Hirschman J, et al. An extended set of yeast-based functional assays accurately identifies human disease mutations. Genome Res. 2016;26(5):670–80. doi: 10.1101/gr.192526.11526975778
-
(2016)
Genome Res
, vol.26
, Issue.5
, pp. 670-680
-
-
Sun, S.1
Yang, F.2
Tan, G.3
Costanzo, M.4
Oughtred, R.5
Hirschman, J.6
-
21
-
-
84902491546
-
The yeast deletion collection: a decade of functional genomics
-
24939991,.; (): –.
-
Giaever G, Nislow C, The yeast deletion collection: a decade of functional genomics. Genetics. 2014;197(2):451–65. doi: 10.1534/genetics.114.16162024939991
-
(2014)
Genetics
, vol.197
, Issue.2
, pp. 451-465
-
-
Giaever, G.1
Nislow, C.2
-
22
-
-
70349634435
-
Quantitative phenotyping via deep barcode sequencing
-
19622793,..; (): –.
-
Smith AM, Heisler LE, Mellor J, Kaper F, Thompson MJ, Chee M, et al. Quantitative phenotyping via deep barcode sequencing. Genome Res. 2009;19(10):1836–42. doi: 10.1101/gr.093955.10919622793
-
(2009)
Genome Res
, vol.19
, Issue.10
, pp. 1836-1842
-
-
Smith, A.M.1
Heisler, L.E.2
Mellor, J.3
Kaper, F.4
Thompson, M.J.5
Chee, M.6
-
23
-
-
37549045998
-
Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures
-
18157128,..; (): –.
-
Delneri D, Hoyle DC, Gkargkas K, Cross EJ, Rash B, Zeef L, et al. Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures. Nat Genet. 2008;40(1):113–7. doi: 10.1038/ng.2007.4918157128
-
(2008)
Nat Genet
, vol.40
, Issue.1
, pp. 113-117
-
-
Delneri, D.1
Hoyle, D.C.2
Gkargkas, K.3
Cross, E.J.4
Rash, B.5
Zeef, L.6
-
24
-
-
31544482407
-
Mapping pathways and phenotypes by systematic gene overexpression
-
16455487,..; (): –.
-
Sopko R, Huang D, Preston N, Chua G, Papp B, Kafadar K, et al. Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell. 2006;21(3):319–30. doi: 10.1016/j.molcel.2005.12.01116455487
-
(2006)
Mol Cell
, vol.21
, Issue.3
, pp. 319-330
-
-
Sopko, R.1
Huang, D.2
Preston, N.3
Chua, G.4
Papp, B.5
Kafadar, K.6
-
25
-
-
84873345436
-
Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method
-
23275495,.; (): –.
-
Makanae K, Kintaka R, Makino T, Kitano H, Moriya H, Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method. Genome Res. 2013;23(2):300–11. doi: 10.1101/gr.146662.11223275495
-
(2013)
Genome Res
, vol.23
, Issue.2
, pp. 300-311
-
-
Makanae, K.1
Kintaka, R.2
Makino, T.3
Kitano, H.4
Moriya, H.5
-
26
-
-
28444478789
-
Biochemical and genetic analysis of the yeast proteome with a movable ORF collection
-
16322557,..; (): –.
-
Gelperin DM, White MA, Wilkinson ML, Kon Y, Kung LA, Wise KJ, et al. Biochemical and genetic analysis of the yeast proteome with a movable ORF collection. Genes Dev. 2005;19(23):2816–26. doi: 10.1101/gad.136210516322557
-
(2005)
Genes Dev
, vol.19
, Issue.23
, pp. 2816-2826
-
-
Gelperin, D.M.1
White, M.A.2
Wilkinson, M.L.3
Kon, Y.4
Kung, L.A.5
Wise, K.J.6
-
27
-
-
75649111192
-
The genetic landscape of a cell
-
20093466,..; (): –.
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, et al. The genetic landscape of a cell. Science. 2010;327(5964):425–31. doi: 10.1126/science.118082320093466
-
(2010)
Science
, vol.327
, Issue.5964
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
-
28
-
-
84883146045
-
Functional analysis with a barcoder yeast gene overexpression system
-
23050238,..; (): –.
-
Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, et al. Functional analysis with a barcoder yeast gene overexpression system. G3 (Bethesda). 2012;2(10):1279–89. doi: 10.1534/g3.112.00340023050238
-
(2012)
G3 (Bethesda)
, vol.2
, Issue.10
, pp. 1279-1289
-
-
Douglas, A.C.1
Smith, A.M.2
Sharifpoor, S.3
Yan, Z.4
Durbic, T.5
Heisler, L.E.6
-
29
-
-
64349112353
-
A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds
-
19349972,..; (): –.
-
Ho CH, Magtanong L, Barker SL, Gresham D, Nishimura S, Natarajan P, et al. A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds. Nat Biotechnol. 2009;27(4):369–77. doi: 10.1038/nbt.153419349972
-
(2009)
Nat Biotechnol
, vol.27
, Issue.4
, pp. 369-377
-
-
Ho, C.H.1
Magtanong, L.2
Barker, S.L.3
Gresham, D.4
Nishimura, S.5
Natarajan, P.6
-
30
-
-
79958081747
-
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
-
21572441,..; (): –.
-
Magtanong L, Ho CH, Barker SL, Jiao W, Baryshnikova A, Bahr S, et al. Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell. Nat Biotechnol. 2011;29(6):505–11. doi: 10.1038/nbt.185521572441
-
(2011)
Nat Biotechnol
, vol.29
, Issue.6
, pp. 505-511
-
-
Magtanong, L.1
Ho, C.H.2
Barker, S.L.3
Jiao, W.4
Baryshnikova, A.5
Bahr, S.6
-
31
-
-
33644807842
-
Synthetic genetic array analysis in Saccharomyces cerevisiae
-
16118434,.;: –.
-
Tong AH, Boone C, Synthetic genetic array analysis in Saccharomyces cerevisiae. Methods Mol Biol. 2006;313:171–92. 16118434
-
(2006)
Methods Mol Biol
, vol.313
, pp. 171-192
-
-
Tong, A.H.1
Boone, C.2
-
32
-
-
48449096999
-
Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers
-
18622398,..; (): –.
-
Yan Z, Costanzo M, Heisler LE, Paw J, Kaper F, Andrews BJ, et al. Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers. Nat Methods. 2008;5(8):719–25. doi: 10.1038/nmeth.123118622398
-
(2008)
Nat Methods
, vol.5
, Issue.8
, pp. 719-725
-
-
Yan, Z.1
Costanzo, M.2
Heisler, L.E.3
Paw, J.4
Kaper, F.5
Andrews, B.J.6
-
33
-
-
77949425833
-
Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action
-
20226027,.; ():.
-
Hillenmeyer ME, Ericson E, Davis RW, Nislow C, Koller D, Giaever G, Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action. Genome Biol. 2010;11(3):R30. doi: 10.1186/gb-2010-11-3-r3020226027
-
(2010)
Genome Biol
, vol.11
, Issue.3
, pp. R30
-
-
Hillenmeyer, M.E.1
Ericson, E.2
Davis, R.W.3
Nislow, C.4
Koller, D.5
Giaever, G.6
-
34
-
-
42349100173
-
The chemical genomic portrait of yeast: uncovering a phenotype for all genes
-
18420932,..; (): –.
-
Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, et al. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science. 2008;320(5874):362–5. doi: 10.1126/science.115002118420932
-
(2008)
Science
, vol.320
, Issue.5874
, pp. 362-365
-
-
Hillenmeyer, M.E.1
Fung, E.2
Wildenhain, J.3
Pierce, S.E.4
Hoon, S.5
Lee, W.6
-
35
-
-
79551570620
-
Knocking out multigene redundancies via cycles of sexual assortment and fluorescence selection
-
21217751,..; (): –.
-
Suzuki Y, St Onge RP, Mani R, King OD, Heilbut A, Labunskyy VM, et al. Knocking out multigene redundancies via cycles of sexual assortment and fluorescence selection. Nat Methods. 2011;8(2):159–64. doi: 10.1038/nmeth.155021217751
-
(2011)
Nat Methods
, vol.8
, Issue.2
, pp. 159-164
-
-
Suzuki, Y.1
St Onge, R.P.2
Mani, R.3
King, O.D.4
Heilbut, A.5
Labunskyy, V.M.6
-
36
-
-
84870419230
-
The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast
-
23103169,.; (): –.
-
Qian W, Ma D, Xiao C, Wang Z, Zhang J, The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast. Cell Rep. 2012;2(5):1399–410. doi: 10.1016/j.celrep.2012.09.01723103169
-
(2012)
Cell Rep
, vol.2
, Issue.5
, pp. 1399-1410
-
-
Qian, W.1
Ma, D.2
Xiao, C.3
Wang, Z.4
Zhang, J.5
-
37
-
-
0020640576
-
Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations
-
6339947,.; (): –.
-
Paquin C, Adams J, Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations. Nature. 1983;302(5908):495–500. doi: 10.1038/302495a06339947
-
(1983)
Nature
, vol.302
, Issue.5908
, pp. 495-500
-
-
Paquin, C.1
Adams, J.2
-
38
-
-
0042496948
-
The role of deleterious and beneficial mutations in the evolution of ploidy levels
-
Otto S, The role of deleterious and beneficial mutations in the evolution of ploidy levels. Lectures on Mathematics in the Life Sciences. 1994;25.
-
(1994)
Lectures on Mathematics in the Life Sciences
, pp. 25
-
-
Otto, S.1
-
39
-
-
58149166731
-
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
-
19079573,..; ():.
-
Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, et al. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet. 2008;4(12):e1000303. doi: 10.1371/journal.pgen.100030319079573
-
(2008)
PLoS Genet
, vol.4
, Issue.12
, pp. e1000303
-
-
Gresham, D.1
Desai, M.M.2
Tucker, C.M.3
Jenq, H.T.4
Pai, D.A.5
Ward, A.6
-
40
-
-
84897008356
-
The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
-
24368781,..; (): –.
-
Payen C, Di Rienzi SC, Ong GT, Pogachar JL, Sanchez JC, Sunshine AB, et al. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection. G3 (Bethesda). 2014;4(3):399–409. doi: 10.1534/g3.113.00936524368781
-
(2014)
G3 (Bethesda)
, vol.4
, Issue.3
, pp. 399-409
-
-
Payen, C.1
Di Rienzi, S.C.2
Ong, G.T.3
Pogachar, J.L.4
Sanchez, J.C.5
Sunshine, A.B.6
-
41
-
-
0033278379
-
Intracellular pathways of copper trafficking in yeast and humans
-
10079832,.;: –.
-
Culotta VC, Lin SJ, Schmidt P, Klomp LW, Casareno RL, Gitlin J, Intracellular pathways of copper trafficking in yeast and humans. Adv Exp Med Biol. 1999;448:247–54. 10079832
-
(1999)
Adv Exp Med Biol
, vol.448
, pp. 247-254
-
-
Culotta, V.C.1
Lin, S.J.2
Schmidt, P.3
Klomp, L.W.4
Casareno, R.L.5
Gitlin, J.6
-
42
-
-
0033773040
-
Saccharomyces cerevisiae expresses three functionally distinct homologues of the nramp family of metal transporters
-
11027260,.; (): –.
-
Portnoy ME, Liu XF, Culotta VC, Saccharomyces cerevisiae expresses three functionally distinct homologues of the nramp family of metal transporters. Mol Cell Biol. 2000;20(21):7893–902. doi: 10.1128/mcb.20.21.7893-7902.200011027260
-
(2000)
Mol Cell Biol
, vol.20
, Issue.21
, pp. 7893-7902
-
-
Portnoy, M.E.1
Liu, X.F.2
Culotta, V.C.3
-
43
-
-
80052324811
-
Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency
-
21829391,.; ():.
-
Wenger JW, Piotrowski J, Nagarajan S, Chiotti K, Sherlock G, Rosenzweig F, Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency. PLoS Genet. 2011;7(8):e1002202. doi: 10.1371/journal.pgen.100220221829391
-
(2011)
PLoS Genet
, vol.7
, Issue.8
, pp. e1002202
-
-
Wenger, J.W.1
Piotrowski, J.2
Nagarajan, S.3
Chiotti, K.4
Sherlock, G.5
Rosenzweig, F.6
-
44
-
-
33847057226
-
The evolutionary significance of cis-regulatory mutations
-
17304246,.; (): –.
-
Wray GA, The evolutionary significance of cis-regulatory mutations. Nat Rev Genet. 2007;8(3):206–16. doi: 10.1038/nrg206317304246
-
(2007)
Nat Rev Genet
, vol.8
, Issue.3
, pp. 206-216
-
-
Wray, G.A.1
-
45
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
-
22728672,..; (): –.
-
Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly. 2012;6(2):80–92. doi: 10.4161/fly.1969522728672
-
(2012)
Fly
, vol.6
, Issue.2
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang le, L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
-
46
-
-
84900032946
-
Loss-of-heterozygosity facilitates passage through Haldane's sieve for Saccharomyces cerevisiae undergoing adaptation
-
24804896,.;:.
-
Gerstein AC, Kuzmin A, Otto SP, Loss-of-heterozygosity facilitates passage through Haldane's sieve for Saccharomyces cerevisiae undergoing adaptation. Nat Commun. 2014;5:3819. doi: 10.1038/ncomms481924804896
-
(2014)
Nat Commun
, vol.5
, pp. 3819
-
-
Gerstein, A.C.1
Kuzmin, A.2
Otto, S.P.3
-
47
-
-
18844407538
-
Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast
-
15716499,..; (): –.
-
Deutschbauer AM, Jaramillo DF, Proctor M, Kumm J, Hillenmeyer ME, Davis RW, et al. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics. 2005;169(4):1915–25. doi: 10.1534/genetics.104.03687115716499
-
(2005)
Genetics
, vol.169
, Issue.4
, pp. 1915-1925
-
-
Deutschbauer, A.M.1
Jaramillo, D.F.2
Proctor, M.3
Kumm, J.4
Hillenmeyer, M.E.5
Davis, R.W.6
-
48
-
-
84876527918
-
Cancer genome-sequencing study design
-
23594910,.; (): –.
-
Mwenifumbo JC, Marra MA, Cancer genome-sequencing study design. Nat Rev Genet. 2013;14(5):321–32. doi: 10.1038/nrg344523594910
-
(2013)
Nat Rev Genet
, vol.14
, Issue.5
, pp. 321-332
-
-
Mwenifumbo, J.C.1
Marra, M.A.2
-
49
-
-
84870599966
-
Functional impact bias reveals cancer drivers
-
22904074,.; ():.
-
Gonzalez-Perez A, Lopez-Bigas N, Functional impact bias reveals cancer drivers. Nucleic Acids Res. 2012;40(21):e169. doi: 10.1093/nar/gks74322904074
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.21
, pp. e169
-
-
Gonzalez-Perez, A.1
Lopez-Bigas, N.2
-
50
-
-
84898056728
-
Recurrent PTPRB and PLCG1 mutations in angiosarcoma
-
24633157,..; (): –.
-
Behjati S, Tarpey PS, Sheldon H, Martincorena I, Van Loo P, Gundem G, et al. Recurrent PTPRB and PLCG1 mutations in angiosarcoma. Nat Genet. 2014;46(4):376–9. doi: 10.1038/ng.292124633157
-
(2014)
Nat Genet
, vol.46
, Issue.4
, pp. 376-379
-
-
Behjati, S.1
Tarpey, P.S.2
Sheldon, H.3
Martincorena, I.4
Van Loo, P.5
Gundem, G.6
-
51
-
-
0034532082
-
Experimental analysis of molecular events during mutational periodic selections in bacterial evolution
-
11102352,.; (): –.
-
Notley-McRobb L, Ferenci T, Experimental analysis of molecular events during mutational periodic selections in bacterial evolution. Genetics. 2000;156(4):1493–501. 11102352
-
(2000)
Genetics
, vol.156
, Issue.4
, pp. 1493-1501
-
-
Notley-McRobb, L.1
Ferenci, T.2
-
52
-
-
84880507665
-
Mutational heterogeneity in cancer and the search for new cancer-associated genes
-
23770567,..; (): –.
-
Lawrence MS, Stojanov P, Polak P, Kryukov GV, Cibulskis K, Sivachenko A, et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature. 2013;499(7457):214–8. doi: 10.1038/nature1221323770567
-
(2013)
Nature
, vol.499
, Issue.7457
, pp. 214-218
-
-
Lawrence, M.S.1
Stojanov, P.2
Polak, P.3
Kryukov, G.V.4
Cibulskis, K.5
Sivachenko, A.6
-
53
-
-
0031919865
-
Regulation of cell size by glucose is exerted via repression of the CLN1 promoter
-
9566870,.; (): –.
-
Flick K, Chapman-Shimshoni D, Stuart D, Guaderrama M, Wittenberg C, Regulation of cell size by glucose is exerted via repression of the CLN1 promoter. Mol Cell Biol. 1998;18(5):2492–501. doi: 10.1128/mcb.18.5.24929566870
-
(1998)
Mol Cell Biol
, vol.18
, Issue.5
, pp. 2492-2501
-
-
Flick, K.1
Chapman-Shimshoni, D.2
Stuart, D.3
Guaderrama, M.4
Wittenberg, C.5
-
54
-
-
80052310539
-
Evidence for hitchhiking of deleterious mutations within the human genome
-
21901107,.; ():.
-
Chun S, Fay JC, Evidence for hitchhiking of deleterious mutations within the human genome. PLoS Genet. 2011;7(8):e1002240. doi: 10.1371/journal.pgen.100224021901107
-
(2011)
PLoS Genet
, vol.7
, Issue.8
, pp. e1002240
-
-
Chun, S.1
Fay, J.C.2
-
55
-
-
84869131230
-
How does adaptation sweep through the genome? Insights from long-term selection experiments
-
22833271,.; (): –.
-
Burke MK, How does adaptation sweep through the genome? Insights from long-term selection experiments. Proceedings of the Royal Society B-Biological Sciences. 2012;279(1749):5029–38. doi: 10.1098/rspb.2012.079922833271
-
(2012)
Proceedings of the Royal Society B-Biological Sciences
, vol.279
, Issue.1749
, pp. 5029-5038
-
-
Burke, M.K.1
-
56
-
-
33846551980
-
Empirical fitness landscapes reveal accessible evolutionary paths
-
17251971,.; (): –.
-
Poelwijk FJ, Kiviet DJ, Weinreich DM, Tans SJ, Empirical fitness landscapes reveal accessible evolutionary paths. Nature. 2007;445(7126):383–6. doi: 10.1038/nature0545117251971
-
(2007)
Nature
, vol.445
, Issue.7126
, pp. 383-386
-
-
Poelwijk, F.J.1
Kiviet, D.J.2
Weinreich, D.M.3
Tans, S.J.4
-
57
-
-
84979944309
-
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae
-
26936925,..; (): –.
-
Rich MS, Payen C, Rubin AF, Ong GT, Sanchez MR, Yachie N, et al. Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae. Genetics. 2016;203(1):191–202. doi: 10.1534/genetics.116.18803726936925
-
(2016)
Genetics
, vol.203
, Issue.1
, pp. 191-202
-
-
Rich, M.S.1
Payen, C.2
Rubin, A.F.3
Ong, G.T.4
Sanchez, M.R.5
Yachie, N.6
-
58
-
-
0026671589
-
Possible cross-regulation of phosphate and sulfate metabolism in Saccharomyces cerevisiae
-
1398064,.; (): –.
-
O'Connell KF, Baker RE, Possible cross-regulation of phosphate and sulfate metabolism in Saccharomyces cerevisiae. Genetics. 1992;132(1):63–73. 1398064
-
(1992)
Genetics
, vol.132
, Issue.1
, pp. 63-73
-
-
O'Connell, K.F.1
Baker, R.E.2
-
59
-
-
84859189663
-
Systematic identification of gene annotation errors in the widely used yeast mutation collections
-
22306811,.; (): –.
-
Ben-Shitrit T, Yosef N, Shemesh K, Sharan R, Ruppin E, Kupiec M, Systematic identification of gene annotation errors in the widely used yeast mutation collections. Nat Methods. 2012;9(4):373–8. doi: 10.1038/nmeth.189022306811
-
(2012)
Nat Methods
, vol.9
, Issue.4
, pp. 373-378
-
-
Ben-Shitrit, T.1
Yosef, N.2
Shemesh, K.3
Sharan, R.4
Ruppin, E.5
Kupiec, M.6
-
60
-
-
84920270149
-
Chromatin remodeling: from transcription to cancer
-
Yaniv M, Chromatin remodeling: from transcription to cancer. Cancer genetics. 2014. doi: 10.1016/j.cancergen.2014.03.006
-
(2014)
Cancer genetics
-
-
Yaniv, M.1
-
61
-
-
0034625349
-
Sphingolipids signal heat stress-induced ubiquitin-dependent proteolysis
-
10764732,.; (): –.
-
Chung N, Jenkins G, Hannun YA, Heitman J, Obeid LM, Sphingolipids signal heat stress-induced ubiquitin-dependent proteolysis. J Biol Chem. 2000;275(23):17229–32. doi: 10.1074/jbc.C00022920010764732
-
(2000)
J Biol Chem
, vol.275
, Issue.23
, pp. 17229-17232
-
-
Chung, N.1
Jenkins, G.2
Hannun, Y.A.3
Heitman, J.4
Obeid, L.M.5
-
62
-
-
84902775598
-
Empirical fitness landscapes and the predictability of evolution
-
24913663,.; (): –.
-
de Visser JA, Krug J, Empirical fitness landscapes and the predictability of evolution. Nat Rev Genet. 2014;15(7):480–90. doi: 10.1038/nrg374424913663
-
(2014)
Nat Rev Genet
, vol.15
, Issue.7
, pp. 480-490
-
-
de Visser, J.A.1
Krug, J.2
-
63
-
-
47149108695
-
Spontaneous mutations in diploid Saccharomyces cerevisiae: another thousand cell generations
-
18593510,.; (): –.
-
Hall DW, Mahmoudizad R, Hurd AW, Joseph SB, Spontaneous mutations in diploid Saccharomyces cerevisiae: another thousand cell generations. Genetics research. 2008;90(3):229–41. doi: 10.1017/S001667230800932418593510
-
(2008)
Genetics research
, vol.90
, Issue.3
, pp. 229-241
-
-
Hall, D.W.1
Mahmoudizad, R.2
Hurd, A.W.3
Joseph, S.B.4
-
64
-
-
84872046076
-
Mutational effects depend on ploidy level: all else is not equal
-
23054913,.; ():.
-
Gerstein AC, Mutational effects depend on ploidy level: all else is not equal. Biol Lett. 2013;9(1):20120614. doi: 10.1098/rsbl.2012.061423054913
-
(2013)
Biol Lett
, vol.9
, Issue.1
, pp. 20120614
-
-
Gerstein, A.C.1
-
65
-
-
84873314664
-
Gene copy-number alterations: a cost-benefit analysis
-
23374337,.; (): –.
-
Tang YC, Amon A, Gene copy-number alterations: a cost-benefit analysis. Cell. 2013;152(3):394–405. doi: 10.1016/j.cell.2012.11.04323374337
-
(2013)
Cell
, vol.152
, Issue.3
, pp. 394-405
-
-
Tang, Y.C.1
Amon, A.2
-
66
-
-
34548131710
-
Effects of aneuploidy on cellular physiology and cell division in haploid yeast
-
17702937,..; (): –.
-
Torres EM, Sokolsky T, Tucker CM, Chan LY, Boselli M, Dunham MJ, et al. Effects of aneuploidy on cellular physiology and cell division in haploid yeast. Science. 2007;317(5840):916–24. doi: 10.1126/science.114221017702937
-
(2007)
Science
, vol.317
, Issue.5840
, pp. 916-924
-
-
Torres, E.M.1
Sokolsky, T.2
Tucker, C.M.3
Chan, L.Y.4
Boselli, M.5
Dunham, M.J.6
-
67
-
-
77956338533
-
High-resolution mapping of protein sequence-function relationships
-
20711194,..; (): –.
-
Fowler DM, Araya CL, Fleishman SJ, Kellogg EH, Stephany JJ, Baker D, et al. High-resolution mapping of protein sequence-function relationships. Nat Methods. 2010;7(9):741–6. doi: 10.1038/nmeth.149220711194
-
(2010)
Nat Methods
, vol.7
, Issue.9
, pp. 741-746
-
-
Fowler, D.M.1
Araya, C.L.2
Fleishman, S.J.3
Kellogg, E.H.4
Stephany, J.J.5
Baker, D.6
-
68
-
-
84884266257
-
The million mutation project: a new approach to genetics in Caenorhabditis elegans
-
23800452,..; (): –.
-
Thompson O, Edgley M, Strasbourger P, Flibotte S, Ewing B, Adair R, et al. The million mutation project: a new approach to genetics in Caenorhabditis elegans. Genome Res. 2013;23(10):1749–62. doi: 10.1101/gr.157651.11323800452
-
(2013)
Genome Res
, vol.23
, Issue.10
, pp. 1749-1762
-
-
Thompson, O.1
Edgley, M.2
Strasbourger, P.3
Flibotte, S.4
Ewing, B.5
Adair, R.6
-
69
-
-
84896692006
-
A comprehensive tRNA deletion library unravels the genetic architecture of the tRNA pool
-
24453985,.; ():.
-
Bloom-Ackermann Z, Navon S, Gingold H, Towers R, Pilpel Y, Dahan O, A comprehensive tRNA deletion library unravels the genetic architecture of the tRNA pool. PLoS Genet. 2014;10(1):e1004084. doi: 10.1371/journal.pgen.100408424453985
-
(2014)
PLoS Genet
, vol.10
, Issue.1
, pp. e1004084
-
-
Bloom-Ackermann, Z.1
Navon, S.2
Gingold, H.3
Towers, R.4
Pilpel, Y.5
Dahan, O.6
-
70
-
-
34347332282
-
Variable epistatic effects between mutations at host recognition sites in phiX174 bacteriophage
-
17598750,.; (): –.
-
Pepin KM, Wichman HA, Variable epistatic effects between mutations at host recognition sites in phiX174 bacteriophage. Evolution. 2007;61(7):1710–24. doi: 10.1111/j.1558-5646.2007.00143.x17598750
-
(2007)
Evolution
, vol.61
, Issue.7
, pp. 1710-1724
-
-
Pepin, K.M.1
Wichman, H.A.2
-
71
-
-
0031458777
-
Test of synergistic interactions among deleterious mutations in bacteria
-
9389477,.; (): –.
-
Elena SF, Lenski RE, Test of synergistic interactions among deleterious mutations in bacteria. Nature. 1997;390(6658):395–8. 9389477
-
(1997)
Nature
, vol.390
, Issue.6658
, pp. 395-398
-
-
Elena, S.F.1
Lenski, R.E.2
-
72
-
-
34047143174
-
Epistatic buffering of fitness loss in yeast double deletion strains
-
17322879,.; (): –.
-
Jasnos L, Korona R, Epistatic buffering of fitness loss in yeast double deletion strains. Nat Genet. 2007;39(4):550–4. doi: 10.1038/ng198617322879
-
(2007)
Nat Genet
, vol.39
, Issue.4
, pp. 550-554
-
-
Jasnos, L.1
Korona, R.2
-
73
-
-
84903291815
-
Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity
-
24970088,.; (): –.
-
Kryazhimskiy S, Rice DP, Jerison ER, Desai MM, Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity. Science. 2014;344(6191):1519–22. doi: 10.1126/science.125093924970088
-
(2014)
Science
, vol.344
, Issue.6191
, pp. 1519-1522
-
-
Kryazhimskiy, S.1
Rice, D.P.2
Jerison, E.R.3
Desai, M.M.4
-
74
-
-
75649111192
-
The genetic landscape of a cell
-
20093466,.. (): –.
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, et al. The genetic landscape of a cell. Science.327(5964):425–31. doi: 10.1126/science.118082320093466
-
Science
, vol.327
, Issue.5964
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
-
75
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
14764870,..; (): –.
-
Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, et al. Global mapping of the yeast genetic interaction network. Science. 2004;303(5659):808–13. doi: 10.1126/science.109131714764870
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 808-813
-
-
Tong, A.H.1
Lesage, G.2
Bader, G.D.3
Ding, H.4
Xu, H.5
Xin, X.6
-
76
-
-
78649856125
-
Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus
-
20937885,.; (): –.
-
Gresham D, Usaite R, Germann SM, Lisby M, Botstein D, Regenberg B, Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus. Proc Natl Acad Sci U S A. 2010;107(43):18551–6. doi: 10.1073/pnas.101402310720937885
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.43
, pp. 18551-18556
-
-
Gresham, D.1
Usaite, R.2
Germann, S.M.3
Lisby, M.4
Botstein, D.5
Regenberg, B.6
-
77
-
-
0023481280
-
A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli
-
3319781,.; (): –.
-
Hoffman CS, Winston F, A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene. 1987;57(2–3):267–72. doi: 10.1016/0378-1119(87)90131-43319781
-
(1987)
Gene
, vol.57
, Issue.2-3
, pp. 267-272
-
-
Hoffman, C.S.1
Winston, F.2
-
78
-
-
70849135366
-
Beanplot: A Boxplot Alternative for Visual Comparison of Distributions
-
Kampstra P, Beanplot: A Boxplot Alternative for Visual Comparison of Distributions. Journal of Statistical Software. 2008;28(1):1–9. doi: 10.18637/jss.v028.c01
-
(2008)
Journal of Statistical Software
, vol.28
, Issue.1
, pp. 1-9
-
-
Kampstra, P.1
-
79
-
-
84888206404
-
Genome-wide consequences of deleting any single gene
-
24211263,..; (): –.
-
Teng X, Dayhoff-Brannigan M, Cheng WC, Gilbert CE, Sing CN, Diny NL, et al. Genome-wide consequences of deleting any single gene. Mol Cell. 2013;52(4):485–94. doi: 10.1016/j.molcel.2013.09.02624211263
-
(2013)
Mol Cell
, vol.52
, Issue.4
, pp. 485-494
-
-
Teng, X.1
Dayhoff-Brannigan, M.2
Cheng, W.C.3
Gilbert, C.E.4
Sing, C.N.5
Diny, N.L.6
|