메뉴 건너뛰기




Volumn 2013, Issue 2, 2013, Pages

Improved use of a public good selects for the evolution of undifferentiated multicellularity

Author keywords

[No Author keywords available]

Indexed keywords

BETA FRUCTOFURANOSIDASE; FRUCTOSE; GALACTOSE; GLUCOSE; GLUCOSE TRANSPORTER; SUCROSE; YELLOW FLUORESCENT PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 84879061636     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.00367     Document Type: Article
Times cited : (103)

References (79)
  • 1
    • 39349100667 scopus 로고    scopus 로고
    • The premetazoan ancestry of cadherins
    • doi: 10.1126/science.1151084
    • Abedin M, King N. 2008. The premetazoan ancestry of cadherins. Science 319:946-8. doi: 10.1126/science.1151084.
    • (2008) Science , vol.319 , pp. 946-948
    • Abedin, M.1    King, N.2
  • 2
    • 0032377357 scopus 로고    scopus 로고
    • Approximate is better than 'exact' for interval estimation of binomial proportions
    • Agresti A, Coull B. 1998. Approximate is better than 'exact' for interval estimation of binomial proportions. Am Stat 52:119-26.
    • (1998) Am Stat , vol.52 , pp. 119-126
    • Agresti, A.1    Coull, B.2
  • 3
    • 84879047636 scopus 로고    scopus 로고
    • A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals
    • doi: 10.7554/eLife.00013
    • Alegado RA, Brown LW, Cao S, Dermenjian RK, Zuzow R, Fairclough SR, et al. 2012. A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals. elife 1:e00013. doi: 10.7554/eLife.00013.
    • (2012) elife , vol.1
    • Alegado, R.A.1    Brown, L.W.2    Cao, S.3    Dermenjian, R.K.4    Zuzow, R.5    Fairclough, S.R.6
  • 4
    • 77949551578 scopus 로고    scopus 로고
    • Whole-genome sequencing of a laboratory-evolved yeast strain
    • doi: 10.1186/1471-2164-11-88
    • Araya CL, Payen C, Dunham MJ, Fields S. 2010. Whole-genome sequencing of a laboratory-evolved yeast strain. BMC Genomics 11:88. doi: 10.1186/1471-2164-11-88.
    • (2010) BMC Genomics , vol.11 , pp. 88
    • Araya, C.L.1    Payen, C.2    Dunham, M.J.3    Fields, S.4
  • 5
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • doi: 10.1038/nature08480
    • Barrick J, Yu D, Yoon S, Jeong H, Oh T, Schneider D, et al. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461:1243-7. doi: 10.1038/nature08480.
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.1    Yu, D.2    Yoon, S.3    Jeong, H.4    Oh, T.5    Schneider, D.6
  • 6
    • 0025050840 scopus 로고
    • The recognition component of the N-end rule pathway
    • Bartel B, Wünning I, Varshavsky A. 1990. The recognition component of the N-end rule pathway. EMBO J 9:3179-89.
    • (1990) EMBO J , vol.9 , pp. 3179-3189
    • Bartel, B.1    Wünning, I.2    Varshavsky, A.3
  • 7
    • 79251589920 scopus 로고    scopus 로고
    • Discovery of mutations in Saccharomyces cerevisiae by pooled linkage analysis and whole genome sequencing
    • doi: 10.1534/genetics.110.123232
    • Birkeland SR, Jin N, Ozdemir AC, Lyons RH, Weisman LS, Wilson TE. 2010. Discovery of mutations in Saccharomyces cerevisiae by pooled linkage analysis and whole genome sequencing. Genetics. doi: 10.1534/genetics.110.123232.
    • (2010) Genetics
    • Birkeland, S.R.1    Jin, N.2    Ozdemir, A.C.3    Lyons, R.H.4    Weisman, L.S.5    Wilson, T.E.6
  • 8
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
    • doi: 10.1007/BF00330984
    • Boeke JD, LaCroute F, Fink GR. 1984. A positive selection for mutants lacking orotidine-5-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197:345-6. doi: 10.1007/BF00330984.
    • (1984) Mol Gen Genet , vol.197 , pp. 345-346
    • Boeke, J.D.1    LaCroute, F.2    Fink, G.R.3
  • 9
    • 0031889453 scopus 로고    scopus 로고
    • Phagotrophy by a flagellate selects for colonial prey: A possible origin of multicellularity
    • doi: 10.1023/A:1006527528063
    • Boraas M, Seale D, Boxhorn J. 1998. Phagotrophy by a flagellate selects for colonial prey: a possible origin of multicellularity. Evol Ecol 12:153-64. doi: 10.1023/A:1006527528063.
    • (1998) Evol Ecol , vol.12 , pp. 153-164
    • Boraas, M.1    Seale, D.2    Boxhorn, J.3
  • 10
    • 33746401568 scopus 로고    scopus 로고
    • Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae
    • doi: 10.1534/genetics.106.057927
    • Brauer MJ, Christianson CM, Pai DA, Dunham MJ. 2006. Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae. Genetics 173:1813-6. doi: 10.1534/genetics.106.057927.
    • (2006) Genetics , vol.173 , pp. 1813-1816
    • Brauer, M.J.1    Christianson, C.M.2    Pai, D.A.3    Dunham, M.J.4
  • 11
    • 84866076360 scopus 로고    scopus 로고
    • Nutritional control of growth and development in yeast
    • doi: 10.1534/genetics.111.135731
    • Broach JR. 2012. Nutritional control of growth and development in yeast. Genetics 192:73-105. doi: 10.1534/genetics.111.135731.
    • (2012) Genetics , vol.192 , pp. 73-105
    • Broach, J.R.1
  • 12
    • 77953139551 scopus 로고    scopus 로고
    • Rapid expansion and functional divergence of subtelomeric gene families in yeasts
    • doi: 10.1016/j.cub.2010.04.027
    • Brown CA, Murray AW, Verstrepen KJ. 2010. Rapid expansion and functional divergence of subtelomeric gene families in yeasts. Curr Biol 20:895-903. doi: 10.1016/j.cub.2010.04.027.
    • (2010) Curr Biol , vol.20 , pp. 895-903
    • Brown, C.A.1    Murray, A.W.2    Verstrepen, K.J.3
  • 13
    • 0031904230 scopus 로고    scopus 로고
    • Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
    • doi: 10.1093/oxfordjournals.molbev.a026009
    • Brown CJ, Todd KM, Rosenzweig RF. 1998. Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evol 15:931-42. doi: 10.1093/oxfordjournals.molbev.a026009.
    • (1998) Mol Biol Evol , vol.15 , pp. 931-942
    • Brown, C.J.1    Todd, K.M.2    Rosenzweig, R.F.3
  • 15
    • 0019566797 scopus 로고
    • Mutants of yeast defective in sucrose utilization
    • Carlson M, Osmond BC, Botstein D. 1981. Mutants of yeast defective in sucrose utilization. Genetics 98:25-40.
    • (1981) Genetics , vol.98 , pp. 25-40
    • Carlson, M.1    Osmond, B.C.2    Botstein, D.3
  • 16
    • 79959314190 scopus 로고    scopus 로고
    • Preparation of Yeast RNA
    • doi: 10.1002/0471142727.mb1312s23
    • Collart MA, Oliviero S. 2001. Preparation of Yeast RNA. Curr Protoc Mol Biol 23:13.12.1-13.12.5. doi: 10.1002/0471142727.mb1312s23.
    • (2001) Curr Protoc Mol Biol , vol.23
    • Collart, M.A.1    Oliviero, S.2
  • 17
    • 0035861863 scopus 로고    scopus 로고
    • Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates
    • doi: 10.1016/S0092-8674(01)00596-7
    • Colman-Lerner A, Chin TE, Brent R. 2001. Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates. Cell 107:739-50. doi: 10.1016/S0092-8674(01)00596-7.
    • (2001) Cell , vol.107 , pp. 739-750
    • Colman-Lerner, A.1    Chin, T.E.2    Brent, R.3
  • 18
    • 0033987736 scopus 로고    scopus 로고
    • Mutation nomenclature extensions and suggestions to describe complex mutations: A discussion
    • doi: 10.1002/(SICI)1098-1004(200001)15:1<7::AID-HUMU4>3.0.CO;2-N
    • den Dunnen JT, Antonarakis SE. 2000. Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion. Hum Mutat 15:7-12. doi: 10.1002/(SICI)1098-1004(200001)15:1<7::AID-HUMU4>3.0.CO;2-N.
    • (2000) Hum Mutat , vol.15 , pp. 7-12
    • den Dunnen, J.T.1    Antonarakis, S.E.2
  • 19
    • 33847256353 scopus 로고    scopus 로고
    • The speed of evolution and maintenance of variation in asexual populations
    • doi: 10.1016/j.cub.2007.01.072
    • Desai MM, Fisher DS, Murray AW. 2007. The speed of evolution and maintenance of variation in asexual populations. Curr Biol 17:385-94. doi: 10.1016/j.cub.2007.01.072.
    • (2007) Curr Biol , vol.17 , pp. 385-394
    • Desai, M.M.1    Fisher, D.S.2    Murray, A.W.3
  • 20
    • 0013487953 scopus 로고
    • Factors influencing the appearance of invertase in Saccharomyces cerevisiae
    • doi: 10.1016/0003-9861(64)90492-8
    • Dodyk F, Rothstein A. 1964. Factors influencing the appearance of invertase in Saccharomyces cerevisiae. Arch Biochem Biophys 104:478-86. doi: 10.1016/0003-9861(64)90492-8.
    • (1964) Arch Biochem Biophys , vol.104 , pp. 478-486
    • Dodyk, F.1    Rothstein, A.2
  • 21
    • 0025913944 scopus 로고
    • The N-end rule is mediated by the UBC2(RAD6) ubiquitin-conjugating enzyme
    • doi: 10.1073/pnas.88.16.7351
    • Dohmen RJ, Madura K, Bartel B, Varshavsky A. 1991. The N-end rule is mediated by the UBC2(RAD6) ubiquitin-conjugating enzyme. Proc Natl Acad Sci USA 88:7351-5. doi: 10.1073/pnas.88.16.7351.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 7351-7355
    • Dohmen, R.J.1    Madura, K.2    Bartel, B.3    Varshavsky, A.4
  • 22
    • 0026576605 scopus 로고
    • Parallel pathways of gene regulation: Homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase
    • doi: 10.1101/gad.6.1.93
    • Dohrmann PR, Butler G, Tamai K, Dorland S, Greene JR, Thiele DJ, et al. 1992. Parallel pathways of gene regulation: homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase. Genes Dev 6:93-104. doi: 10.1101/gad.6.1.93.
    • (1992) Genes Dev , vol.6 , pp. 93-104
    • Dohrmann, P.R.1    Butler, G.2    Tamai, K.3    Dorland, S.4    Greene, J.R.5    Thiele, D.J.6
  • 23
    • 0005362983 scopus 로고
    • The myxobacteria: New directions in studies of procaryotic development
    • doi: 10.3109/10408417209103873
    • Dworkin M. 1972. The myxobacteria: new directions in studies of procaryotic development. CRC Crit Rev Microbiol 2:435-52. doi: 10.3109/10408417209103873.
    • (1972) CRC Crit Rev Microbiol , vol.2 , pp. 435-452
    • Dworkin, M.1
  • 24
    • 77954236943 scopus 로고    scopus 로고
    • Large colonial organisms with coordinated growth in oxygenated environments 2.1 Gyr ago
    • doi: 10.1038/nature09166
    • El Albani A, Bengtson S, Canfield DE, Bekker A, Macchiarelli R, Mazurier A, et al. 2010. Large colonial organisms with coordinated growth in oxygenated environments 2.1 Gyr ago. Nature 466:100-4. doi: 10.1038/nature09166.
    • (2010) Nature , vol.466 , pp. 100-104
    • El Albani, A.1    Bengtson, S.2    Canfield, D.E.3    Bekker, A.4    McChiarelli, R.5    Mazurier, A.6
  • 26
    • 0033578424 scopus 로고    scopus 로고
    • Systematic changes in gene expression patterns following adaptive evolution in yeast
    • doi: 10.1073/pnas.96.17.9721
    • Ferea TL, Botstein D, Brown PO, Rosenzweig RF. 1999. Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc Natl Acad Sci USA 96:9721-6. doi: 10.1073/pnas.96.17.9721.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 9721-9726
    • Ferea, T.L.1    Botstein, D.2    Brown, P.O.3    Rosenzweig, R.F.4
  • 27
    • 58149166731 scopus 로고    scopus 로고
    • The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
    • doi: 10.1371/journal.pgen.1000303
    • Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, et al. 2008. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet 4:e1000303. doi: 10.1371/journal.pgen.1000303.
    • (2008) PLoS Genet , vol.4
    • Gresham, D.1    Desai, M.M.2    Tucker, C.M.3    Jenq, H.T.4    Pai, D.A.5    Ward, A.6
  • 28
    • 37749028324 scopus 로고    scopus 로고
    • The evolution of multicellularity: A minor major transition?
    • doi: 10.1146/annurev.ecolsys.36.102403.114735
    • Grosberg RK, Strathmann RR. 2007. The evolution of multicellularity: a minor major transition? Annu Rev Ecol Evol Syst 38:621-54. doi: 10.1146/annurev.ecolsys.36.102403.114735.
    • (2007) Annu Rev Ecol Evol Syst , vol.38 , pp. 621-654
    • Grosberg, R.K.1    Strathmann, R.R.2
  • 29
    • 0034710923 scopus 로고    scopus 로고
    • A Saccharomyces gene family involved in invasive growth, cell-cell adhesion, and mating
    • doi: 10.1073/pnas.220420397
    • Guo B, Styles CA, Feng Q, Fink GR. 2000. A Saccharomyces gene family involved in invasive growth, cell-cell adhesion, and mating. Proc Natl Acad Sci USA 97:12158-63. doi: 10.1073/pnas.220420397.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 12158-12163
    • Guo, B.1    Styles, C.A.2    Feng, Q.3    Fink, G.R.4
  • 30
    • 34047258309 scopus 로고    scopus 로고
    • Positive-feedback loops as a flexible biological module
    • doi: 10.1016/j.cub.2007.03.016
    • Ingolia NT, Murray AW. 2007. Positive-feedback loops as a flexible biological module. Curr Biol 17:668-77. doi: 10.1016/j.cub.2007.03.016.
    • (2007) Curr Biol , vol.17 , pp. 668-677
    • Ingolia, N.T.1    Murray, A.W.2
  • 31
    • 0035945567 scopus 로고    scopus 로고
    • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    • doi: 10.1038/35054095
    • Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO. 2001. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409:533-8. doi: 10.1038/35054095.
    • (2001) Nature , vol.409 , pp. 533-538
    • Iyer, V.R.1    Horak, C.E.2    Scafe, C.S.3    Botstein, D.4    Snyder, M.5    Brown, P.O.6
  • 32
    • 19944401050 scopus 로고    scopus 로고
    • The multiple biological roles of the 3→5 exonuclease of Saccharomyces cerevisiae DNA polymerase delta require switching between the polymerase and exonuclease domains
    • doi: 10.1128/MCB.25.1.461-471.2005
    • Jin YH, Garg P, Stith CMW, Al-Refai H, Sterling JF, Murray LJW, et al. 2005. The multiple biological roles of the 3→5 exonuclease of Saccharomyces cerevisiae DNA polymerase delta require switching between the polymerase and exonuclease domains. Mol Cell Biol 25:461-71. doi: 10.1128/MCB.25.1.461-471.2005.
    • (2005) Mol Cell Biol , vol.25 , pp. 461-471
    • Jin, Y.H.1    Garg, P.2    Stith, C.M.W.3    Al-Refai, H.4    Sterling, J.F.5    Murray, L.J.W.6
  • 33
    • 0022753539 scopus 로고
    • Secretion-defective mutations in the signal sequence for Saccharomyces cerevisiae invertase
    • Kaiser CA, Botstein D. 1986. Secretion-defective mutations in the signal sequence for Saccharomyces cerevisiae invertase. Mol Cell Biol 6:2382-91.
    • (1986) Mol Cell Biol , vol.6 , pp. 2382-2391
    • Kaiser, C.A.1    Botstein, D.2
  • 34
    • 56749107039 scopus 로고    scopus 로고
    • Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
    • doi: 10.1038/ng.280
    • Kao KC, Sherlock G. 2008. Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat Genet 40:1499-504. doi: 10.1038/ng.280.
    • (2008) Nat Genet , vol.40 , pp. 1499-1504
    • Kao, K.C.1    Sherlock, G.2
  • 36
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • doi: 10.1101/gr.129684.111
    • Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, et al. 2012. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22:568-76. doi: 10.1101/gr.129684.111.
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.2    Larson, D.E.3    Shen, D.4    McLellan, M.D.5    Lin, L.6
  • 37
    • 80052321144 scopus 로고    scopus 로고
    • Sucrose utilization in budding yeast as a model for the origin of undifferentiated multicellularity
    • doi: 10.1371/journal.pbio.1001122
    • Koschwanez JH, Foster KR, Murray AW. 2011. Sucrose utilization in budding yeast as a model for the origin of undifferentiated multicellularity. Plos Biol 9:e1001122. doi: 10.1371/journal.pbio.1001122.
    • (2011) Plos Biol , vol.9
    • Koschwanez, J.H.1    Foster, K.R.2    Murray, A.W.3
  • 38
    • 79955590028 scopus 로고    scopus 로고
    • Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
    • doi: 10.1371/journal.pgen.1002056
    • Kvitek DJ, Sherlock G. 2011. Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape. PLoS Genet 7:e1002056. doi: 10.1371/journal.pgen.1002056.
    • (2011) PLoS Genet , vol.7
    • Kvitek, D.J.1    Sherlock, G.2
  • 39
    • 79960137718 scopus 로고    scopus 로고
    • Genetic variation and the fate of beneficial mutations in asexual populations
    • doi: 10.1534/genetics.111.128942
    • Lang GI, Botstein D, Desai MM. 2011. Genetic variation and the fate of beneficial mutations in asexual populations. Genetics 188:647-61. doi: 10.1534/genetics.111.128942.
    • (2011) Genetics , vol.188 , pp. 647-661
    • Lang, G.I.1    Botstein, D.2    Desai, M.M.3
  • 40
    • 40849138236 scopus 로고    scopus 로고
    • Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae
    • doi: 10.1534/genetics.107.071506
    • Lang GI, Murray AW. 2008. Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. Genetics 178:67-82. doi: 10.1534/genetics.107.071506.
    • (2008) Genetics , vol.178 , pp. 67-82
    • Lang, G.I.1    Murray, A.W.2
  • 41
    • 0001498389 scopus 로고
    • Experimental studies of pleiotropy and epistasis in Escherichia coli. I. Variation in competitive fitness among mutants resistant to virus T4
    • doi: 10.2307/2409028
    • Lenski R. 1988. Experimental studies of pleiotropy and epistasis in Escherichia coli. I. Variation in competitive fitness among mutants resistant to virus T4. Evolution 42:425-32. doi: 10.2307/2409028.
    • (1988) Evolution , vol.42 , pp. 425-432
    • Lenski, R.1
  • 42
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
    • doi: 10.1086/285289
    • Lenski RE, Rose MR, Simpson SC, Tadler SC. 1991. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am Nat 138:1315-41. doi: 10.1086/285289.
    • (1991) Am Nat , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 43
    • 0000313246 scopus 로고
    • Resource-limited growth, competition, and predation: A model and experimental studies with bacteria and bacteriophage
    • doi: 10.1016/j.mbs.2007.02.005
    • Levin BR, Stewart FM, Chao L. 1977. Resource-limited growth, competition, and predation: A model and experimental studies with bacteria and bacteriophage. Am Nat 111:3-24. doi: 10.1016/j.mbs.2007.02.005.
    • (1977) Am Nat , vol.111 , pp. 3-24
    • Levin, B.R.1    Stewart, F.M.2    Chao, L.3
  • 44
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • doi: 10.1093/bioinformatics/btp324
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-60. doi: 10.1093/bioinformatics/btp324.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 45
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • doi: 10.1093/bioinformatics/btp352
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-9. doi: 10.1093/bioinformatics/btp352.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6
  • 46
    • 31544457584 scopus 로고    scopus 로고
    • Genetic interactions between mediator and the late G1-specific transcription factor Swi6 in Saccharomyces cerevisiae
    • doi: 10.1534/genetics.105.043893
    • Li L, Quinton T, Miles S, Breeden LL. 2005. Genetic interactions between mediator and the late G1-specific transcription factor Swi6 in Saccharomyces cerevisiae. Genetics 171:477-88. doi: 10.1534/genetics.105.043893.
    • (2005) Genetics , vol.171 , pp. 477-488
    • Li, L.1    Quinton, T.2    Miles, S.3    Breeden, L.L.4
  • 47
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T) method
    • doi: 10.1006/meth.2001.1262
    • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T) method. Methods 25:402-8. doi: 10.1006/meth.2001.1262.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 48
    • 81355133271 scopus 로고    scopus 로고
    • The statistics of bulk segregant analysis using next generation sequencing
    • doi: 10.1371/journal.pcbi.1002255
    • Magwene PM, Willis JH, Kelly JK. 2011. The statistics of bulk segregant analysis using next generation sequencing. PLoS Comput Biol 7:e1002255. doi: 10.1371/journal.pcbi.1002255.
    • (2011) PLoS Comput Biol , vol.7
    • Magwene, P.M.1    Willis, J.H.2    Kelly, J.K.3
  • 49
    • 33744955037 scopus 로고    scopus 로고
    • Explaining the Cambrian "Explosion" of animals
    • doi: 10.1146/ annurev.earth.33.031504.103001
    • Marshall CR. 2006. Explaining the Cambrian "Explosion" of animals. Annu Rev Earth Planet Sci 34:355-84. doi: 10.1146/ annurev.earth.33.031504.103001.
    • (2006) Annu Rev Earth Planet Sci , vol.34 , pp. 355-384
    • Marshall, C.R.1
  • 50
    • 0020771260 scopus 로고
    • Control of cell division in Saccharomyces cerevisiae mutants defective in adenylate cyclase and cAMP-dependent protein kinase
    • doi: 10.1016/0014-4827(83)90333-6
    • Matsumoto K, Uno I, Ishikawa T. 1983. Control of cell division in Saccharomyces cerevisiae mutants defective in adenylate cyclase and cAMP-dependent protein kinase. Exp Cell Res 146:151-61. doi: 10.1016/0014-4827(83)90333-6.
    • (1983) Exp Cell Res , vol.146 , pp. 151-161
    • Matsumoto, K.1    Uno, I.2    Ishikawa, T.3
  • 51
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • doi: 10.1101/gr.107524.110
    • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20:1297-303. doi: 10.1101/gr.107524.110.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 52
    • 0030592954 scopus 로고    scopus 로고
    • Kinetic analysis of hexose uptake in Saccharomyces cerevisiae cultivated in continuous culture
    • doi: 10.1016/S0005-2728(96)00098-9
    • Meijer MM, Boonstra J, Verkleij AJ, Verrips CT. 1996. Kinetic analysis of hexose uptake in Saccharomyces cerevisiae cultivated in continuous culture. Biochim Biophys Acta 1277:209-16. doi: 10.1016/S0005-2728(96)00098-9.
    • (1996) Biochim Biophys Acta , vol.1277 , pp. 209-216
    • Meijer, M.M.1    Boonstra, J.2    Verkleij, A.J.3    Verrips, C.T.4
  • 53
    • 0026052189 scopus 로고
    • Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations
    • doi: 10.1073/pnas.88.21.9828
    • Michelmore RW, Paran I, Kesseli RV. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88:9828-32. doi: 10.1073/pnas.88.21.9828.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 9828-9832
    • Michelmore, R.W.1    Paran, I.2    Kesseli, R.V.3
  • 54
    • 0022504637 scopus 로고
    • Genealogy of principal strains of the yeast genetic stock center
    • Mortimer RK, Johnston JR. 1986. Genealogy of principal strains of the yeast genetic stock center. Genetics 113:35-43.
    • (1986) Genetics , vol.113 , pp. 35-43
    • Mortimer, R.K.1    Johnston, J.R.2
  • 55
    • 0033786937 scopus 로고    scopus 로고
    • Mediator of transcriptional regulation
    • doi: 10.1146/annurev.biochem.69.1.729
    • Myers LC, Kornberg RD. 2000. Mediator of transcriptional regulation. Annu Rev Biochem 69:729-49. doi: 10.1146/annurev.biochem.69.1.729.
    • (2000) Annu Rev Biochem , vol.69 , pp. 729-749
    • Myers, L.C.1    Kornberg, R.D.2
  • 56
    • 0029864499 scopus 로고    scopus 로고
    • Two glucose transporters in Saccharomyces cerevisiae are glucose sensors that generate a signal for induction of gene expression
    • doi: 10.1073/pnas.93.22.12428
    • Ozcan S, Dover J, Rosenwald AG, Wölfl S, Johnston M. 1996. Two glucose transporters in Saccharomyces cerevisiae are glucose sensors that generate a signal for induction of gene expression. Proc Natl Acad Sci USA 93:12428-32. doi: 10.1073/pnas.93.22.12428.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 12428-12432
    • Ozcan, S.1    Dover, J.2    Rosenwald, A.G.3    Wölfl, S.4    Johnston, M.5
  • 57
    • 0032865543 scopus 로고    scopus 로고
    • Function and regulation of yeast hexose transporters
    • Ozcan S, Johnston M. 1999. Function and regulation of yeast hexose transporters. Microbiol Mol Biol Rev 63:554-69.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 554-569
    • Ozcan, S.1    Johnston, M.2
  • 58
    • 0020640576 scopus 로고
    • Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations
    • doi: 10.1038/302495a0
    • Paquin C, Adams J. 1983. Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations. Nature 302:495-500. doi: 10.1038/302495a0.
    • (1983) Nature , vol.302 , pp. 495-500
    • Paquin, C.1    Adams, J.2
  • 59
    • 0022478894 scopus 로고
    • Mutations affecting the signal sequence alter synthesis and secretion of yeast invertase
    • doi: 10.1073/pnas.83.14.5033
    • Perlman D, Raney P, Halvorson HO. 1986. Mutations affecting the signal sequence alter synthesis and secretion of yeast invertase. Proc Natl Acad Sci USA 83:5033-7. doi: 10.1073/pnas.83.14.5033.
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 5033-5037
    • Perlman, D.1    Raney, P.2    Halvorson, H.O.3
  • 60
    • 84859446414 scopus 로고    scopus 로고
    • Formation of the 'Great Unconformity' as a trigger for the Cambrian explosion
    • doi: 10.1038/nature10969
    • Peters SE, Gaines RR. 2012. Formation of the 'Great Unconformity' as a trigger for the Cambrian explosion. Nature 484:363-6. doi: 10.1038/nature10969.
    • (2012) Nature , vol.484 , pp. 363-366
    • Peters, S.E.1    Gaines, R.R.2
  • 61
    • 0037417977 scopus 로고    scopus 로고
    • An evolutionary scenario for the transition to undifferentiated multicellularity
    • doi: 10.1073/pnas.0335420100
    • Pfeiffer T, Bonhoeffer S. 2003. An evolutionary scenario for the transition to undifferentiated multicellularity. Proc Natl Acad Sci USA 100:1095-8. doi: 10.1073/pnas.0335420100.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 1095-1098
    • Pfeiffer, T.1    Bonhoeffer, S.2
  • 63
    • 0030891998 scopus 로고    scopus 로고
    • Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression
    • doi: 10.1111/j.1432-1033.1997.00324.x
    • Reifenberger E, Boles E, Ciriacy M. 1997. Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression. Eur J Biochem 245:324-33. doi: 10.1111/j.1432-1033.1997.00324.x.
    • (1997) Eur J Biochem , vol.245 , pp. 324-333
    • Reifenberger, E.1    Boles, E.2    Ciriacy, M.3
  • 64
    • 0025979877 scopus 로고
    • Targeting, disruption, replacement, and allele rescue: Integrative DNA transformation in yeast
    • doi: 10.1016/0076-6879(91)94022-5
    • Rothstein R. 1991. Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast. Meth Enzymol 194:281-301. doi: 10.1016/0076-6879(91)94022-5.
    • (1991) Meth Enzymol , vol.194 , pp. 281-301
    • Rothstein, R.1
  • 65
    • 45549097846 scopus 로고    scopus 로고
    • Regulation of the yeast Ace2 transcription factor during the cell cycle
    • doi: 10.1074/jbc.M800196200
    • Sbia M, Parnell EJ, Yu Y, Olsen AE, Kretschmann KL, Voth WP, et al. 2008. Regulation of the yeast Ace2 transcription factor during the cell cycle. J Biol Chem 283:11135-45. doi: 10.1074/jbc.M800196200.
    • (2008) J Biol Chem , vol.283 , pp. 11135-11145
    • Sbia, M.1    Parnell, E.J.2    Yu, Y.3    Olsen, A.E.4    Kretschmann, K.L.5    Voth, W.P.6
  • 67
    • 33747370046 scopus 로고    scopus 로고
    • High-resolution mutation mapping reveals parallel experimental evolution in yeast
    • doi: 10.1371/journal.pbio.0040256
    • Segrè AV, Murray AW, Leu J-Y. 2006. High-resolution mutation mapping reveals parallel experimental evolution in yeast. Plos Biol 4:e256. doi: 10.1371/journal.pbio.0040256.
    • (2006) Plos Biol , vol.4
    • Segrè, A.V.1    Murray, A.W.2    Leu, J.-Y.3
  • 68
    • 55649083541 scopus 로고    scopus 로고
    • FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast
    • doi: 10.1016/j.cell.2008.09.037
    • Smukalla S, Caldara M, Pochet N, Beauvais A, Guadagnini S, Yan C, et al. 2008. FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast. Cell 135:726-37. doi: 10.1016/j.cell.2008.09.037.
    • (2008) Cell , vol.135 , pp. 726-737
    • Smukalla, S.1    Caldara, M.2    Pochet, N.3    Beauvais, A.4    Guadagnini, S.5    Yan, C.6
  • 70
    • 0023664219 scopus 로고
    • Effect of glycosylation on yeast invertase oligomer stability
    • Tammi M, Ballou L, Taylor A, Ballou CE. 1987. Effect of glycosylation on yeast invertase oligomer stability. J Biol Chem 262:4395-401.
    • (1987) J Biol Chem , vol.262 , pp. 4395-4401
    • Tammi, M.1    Ballou, L.2    Taylor, A.3    Ballou, C.E.4
  • 71
    • 0024497239 scopus 로고
    • IRA1, an inhibitory regulator of the RAS-cyclic AMP pathway in Saccharomyces cerevisiae
    • Tanaka K, Matsumoto K, Toh-E A. 1989. IRA1, an inhibitory regulator of the RAS-cyclic AMP pathway in Saccharomyces cerevisiae. Mol Cell Biol 9:757-68.
    • (1989) Mol Cell Biol , vol.9 , pp. 757-768
    • Tanaka, K.1    Matsumoto, K.2    Toh, E.A.3
  • 72
    • 0025283632 scopus 로고
    • IRA2, a second gene of Saccharomyces cerevisiae that encodes a protein with a domain homologous to mammalian ras GTPase-activating protein
    • Tanaka K, Nakafuku M, Tamanoi F, Kaziro Y, Matsumoto K, Toh-e A. 1990. IRA2, a second gene of Saccharomyces cerevisiae that encodes a protein with a domain homologous to mammalian ras GTPase-activating protein. Mol Cell Biol 10:4303-13.
    • (1990) Mol Cell Biol , vol.10 , pp. 4303-4313
    • Tanaka, K.1    Nakafuku, M.2    Tamanoi, F.3    Kaziro, Y.4    Matsumoto, K.5    Toh-e, A.6
  • 73
    • 70549086797 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
    • doi: 10.1186/1471-2199-10-99
    • Teste M-A, Duquenne M, François JM, Parrou J-L. 2009. Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol Biol 10:99. doi: 10.1186/1471-2199-10-99.
    • (2009) BMC Mol Biol , vol.10 , pp. 99
    • Teste, M.-A.1    Duquenne, M.2    François, J.M.3    Parrou, J.-L.4
  • 74
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • doi: 10.1093/bioinformatics/btp120
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-11. doi: 10.1093/bioinformatics/btp120.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 75
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • doi: 10.1038/nbt.1621
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28:511-5. doi: 10.1038/nbt.1621.
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    van Baren, M.J.6
  • 76
    • 80052324811 scopus 로고    scopus 로고
    • Hunger artists: Yeast adapted to carbon limitation show trade-offs under carbon sufficiency
    • doi: 10.1371/journal.pgen.1002202
    • Wenger JW, Piotrowski J, Nagarajan S, Chiotti K, Sherlock G, Rosenzweig F. 2011. Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency. PLoS Genet 7:e1002202. doi: 10.1371/journal.pgen.1002202.
    • (2011) PLoS Genet , vol.7
    • Wenger, J.W.1    Piotrowski, J.2    Nagarajan, S.3    Chiotti, K.4    Sherlock, G.5    Rosenzweig, F.6
  • 79
    • 0042856391 scopus 로고    scopus 로고
    • Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
    • doi: 10.1038/ng1222
    • Yvert G, Brem RB, Whittle J, Akey JM, Foss E, Smith EN, et al. 2003. Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Nat Genet 35:57-64. doi: 10.1038/ng1222.
    • (2003) Nat Genet , vol.35 , pp. 57-64
    • Yvert, G.1    Brem, R.B.2    Whittle, J.3    Akey, J.M.4    Foss, E.5    Smith, E.N.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.