Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula

BMC Genomics

Volumn 18, Issue 1, 2017, Pages

  Moll, Karen M ^a,b   Zhou, Peng ^c   Ramaraj, Thiruvarangan ^a   Fajardo, Diego ^a   Devitt, Nicholas P ^a   Sadowsky, Michael J ^c   Stupar, Robert M ^c   Tiffin, Peter ^c   Miller, Jason R ^d   Young, Nevin D ^c   Silverstein, Kevin A T ^c   Mudge, Joann ^a  

^a NATIONAL CENTER FOR GENOME RESOURCES   (United States)

^b MONTANA STATE UNIVERSITY   (United States)

^c UNIVERSITY OF MINNESOTA   (United States)

^d J CRAIG VENTER INSTITUTE   (United States)

Author keywords

BioNano; Dovetail; Genome assembly; Medicago truncatula; Next generation sequencing; PacBio

Indexed keywords

BARREL MEDIC; CHROMOSOME; DNA FLANKING REGION; FUNCTIONAL GENOMICS; GENE REARRANGEMENT; ILLINOIS; NEXT GENERATION SEQUENCING; NONHUMAN; PLANT GENOME; PLANT MODEL; COST BENEFIT ANALYSIS; ECONOMICS; GENETICS; GENOMICS; PLANT CHROMOSOME; PROCEDURES; QUALITY CONTROL; STANDARD; STANDARDS; TIME FACTOR;

CHROMOSOMES, PLANT; COST-BENEFIT ANALYSIS; GENOME, PLANT; GENOMICS; MEDICAGO TRUNCATULA; QUALITY CONTROL; REFERENCE STANDARDS; TIME FACTORS;

EID: 85026805940     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-017-3971-4     Document Type: Article

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