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Volumn 49, Issue 7, 2017, Pages 1015-1024

Between-region genetic divergence reflects the mode and tempo of tumor evolution

Author keywords

[No Author keywords available]

Indexed keywords

TEMOZOLOMIDE; DNA;

EID: 85021728567     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3891     Document Type: Article
Times cited : (104)

References (55)
  • 1
    • 84908007911 scopus 로고
    • A new theory on cancer-inducing mechanism
    • Nordling, C.O. A new theory on cancer-inducing mechanism. Br. J. Cancer 7, 68-72 (1953).
    • (1953) Br. J. Cancer , vol.7 , pp. 68-72
    • Nordling, C.O.1
  • 2
    • 84965187257 scopus 로고
    • The age distribution of cancer and a multi-stage theory of carcinogenesis
    • Armitage, P. & Doll, R. The age distribution of cancer and a multi-stage theory of carcinogenesis. Br. J. Cancer 8, 1-12 (1954).
    • (1954) Br. J. Cancer , vol.8 , pp. 1-12
    • Armitage, P.1    Doll, R.2
  • 3
    • 0017167185 scopus 로고
    • The clonal evolution of tumor cell populations
    • Nowell, P.C. The clonal evolution of tumor cell populations. Science 194, 23-28 (1976).
    • (1976) Science , vol.194 , pp. 23-28
    • Nowell, P.C.1
  • 4
    • 0016692602 scopus 로고
    • Mutation selection and the natural history of cancer
    • Cairns, J. Mutation selection and the natural history of cancer. Nature 255, 197-200 (1975).
    • (1975) Nature , vol.255 , pp. 197-200
    • Cairns, J.1
  • 5
    • 0025312728 scopus 로고
    • A genetic model for colorectal tumorigenesis
    • Fearon, E.R. & Vogelstein, B. A genetic model for colorectal tumorigenesis. Cell 61, 759-767 (1990).
    • (1990) Cell , vol.61 , pp. 759-767
    • Fearon, E.R.1    Vogelstein, B.2
  • 6
    • 0033953590 scopus 로고    scopus 로고
    • Genetic reconstruction of individual colorectal tumor histories
    • Tsao, J.L. et al. Genetic reconstruction of individual colorectal tumor histories. Proc. Natl. Acad. Sci. USA 97, 1236-1241 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1236-1241
    • Tsao, J.L.1
  • 7
    • 84873441292 scopus 로고    scopus 로고
    • Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation
    • Tomasetti, C., Vogelstein, B. & Parmigiani, G. Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation. Proc. Natl. Acad. Sci. USA 110, 1999-2004 (2013).
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 1999-2004
    • Tomasetti, C.1    Vogelstein, B.2    Parmigiani, G.3
  • 8
    • 85016785589 scopus 로고    scopus 로고
    • A population genetics perspective on the determinants of intra-tumor heterogeneity
    • Hu, Z., Sun, R. & Curtis, C. A population genetics perspective on the determinants of intra-tumor heterogeneity. Biochim. Biophys. Acta http://dx.doi.org/10.1016/j. bbcan.2017.03.001 (2017).
    • (2017) Biochim. Biophys. Acta
    • Hu, Z.1    Sun, R.2    Curtis, C.3
  • 9
    • 84875490185 scopus 로고    scopus 로고
    • Cancer genome landscapes
    • Vogelstein, B. et al. Cancer genome landscapes. Science 339, 1546-1558 (2013).
    • (2013) Science , vol.339 , pp. 1546-1558
    • Vogelstein, B.1
  • 10
    • 84861550476 scopus 로고    scopus 로고
    • The life history of 21 breast cancers
    • Nik-Zainal, S. et al. The life history of 21 breast cancers. Cell 149, 994-1007 (2012).
    • (2012) Cell , vol.149 , pp. 994-1007
    • Nik-Zainal, S.1
  • 12
    • 84897954204 scopus 로고    scopus 로고
    • PyClone: Statistical inference of clonal population structure in cancer
    • Roth, A. et al. PyClone: statistical inference of clonal population structure in cancer. Nat. Methods 11, 396-398 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 396-398
    • Roth, A.1
  • 13
    • 84952310964 scopus 로고    scopus 로고
    • SciClone: Inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
    • Miller, C.A. et al. SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution. PLOS Comput. Biol. 10, e1003665 (2014).
    • (2014) PLOS Comput. Biol. , vol.10 , pp. e1003665
    • Miller, C.A.1
  • 14
    • 84935825808 scopus 로고    scopus 로고
    • PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
    • Deshwar, A.G. et al. PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors. Genome Biol. 16, 35 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 35
    • Deshwar, A.G.1
  • 15
    • 84923952286 scopus 로고    scopus 로고
    • A Big Bang model of human colorectal tumor growth
    • Sottoriva, A. et al. A Big Bang model of human colorectal tumor growth. Nat. Genet. 47, 209-216 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 209-216
    • Sottoriva, A.1
  • 16
    • 84959902916 scopus 로고    scopus 로고
    • Integrated multiregional analysis proposing a new model of colorectal cancer evolution
    • Uchi, R. et al. Integrated multiregional analysis proposing a new model of colorectal cancer evolution. PLoS Genet. 12, e1005778 (2016).
    • (2016) PLoS Genet. , vol.12 , pp. e1005778
    • Uchi, R.1
  • 17
    • 84986601878 scopus 로고    scopus 로고
    • Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates
    • Sievers, C.K. et al. Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates. Gut http://dx.doi.org/10.1136/gutjnl-2016-312232 (2016).
    • (2016) Gut
    • Sievers, C.K.1
  • 18
    • 84959564974 scopus 로고    scopus 로고
    • Quantifying clonal and subclonal passenger mutations in cancer evolution
    • Bozic, I., Gerold, J.M. & Nowak, M.A. Quantifying clonal and subclonal passenger mutations in cancer evolution. PLOS Comput. Biol. 12, e1004731 (2016).
    • (2016) PLOS Comput. Biol. , vol.12 , pp. e1004731
    • Bozic, I.1    Gerold, J.M.2    Nowak, M.A.3
  • 19
    • 85020860197 scopus 로고    scopus 로고
    • Multiregion ultra-deep sequencing reveals early intermixing and variable levels of intratumoral heterogeneity in colorectal cancer
    • Suzuki, Y. et al. Multiregion ultra-deep sequencing reveals early intermixing and variable levels of intratumoral heterogeneity in colorectal cancer. Mol. Oncol. 11, 124-139 (2017).
    • (2017) Mol. Oncol. , vol.11 , pp. 124-139
    • Suzuki, Y.1
  • 20
    • 84948428646 scopus 로고    scopus 로고
    • Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution
    • Ling, S. et al. Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution. Proc. Natl. Acad. Sci. USA 112, E6496-E6505 (2015).
    • (2015) Proc. Natl. Acad. Sci. USA , vol.112 , pp. E6496-E6505
    • Ling, S.1
  • 22
    • 0035691964 scopus 로고    scopus 로고
    • Directional selection and the site-frequency spectrum
    • Bustamante, C.D., Wakeley, J., Sawyer, S. & Hartl, D.L. Directional selection and the site-frequency spectrum. Genetics 159, 1779-1788 (2001).
    • (2001) Genetics , vol.159 , pp. 1779-1788
    • Bustamante, C.D.1    Wakeley, J.2    Sawyer, S.3    Hartl, D.L.4
  • 23
    • 0037227366 scopus 로고    scopus 로고
    • Intra-deme molecular diversity in spatially expanding populations
    • Ray, N., Currat, M. & Excoffer, L. Intra-deme molecular diversity in spatially expanding populations. Mol. Biol. Evol. 20, 76-86 (2003).
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 76-86
    • Ray, N.1    Currat, M.2    Excoffer, L.3
  • 24
    • 84961677963 scopus 로고    scopus 로고
    • At least two well-spaced samples are needed to genotype a solid tumor
    • Siegmund, K. & Shibata, D. At least two well-spaced samples are needed to genotype a solid tumor. BMC Cancer 16, 250 (2016).
    • (2016) BMC Cancer , vol.16 , pp. 250
    • Siegmund, K.1    Shibata, D.2
  • 26
    • 84879629520 scopus 로고    scopus 로고
    • Population genetics of neutral mutations in exponentially growing cancer cell populations
    • Durrett, R. Population genetics of neutral mutations in exponentially growing cancer cell populations. Ann. Appl. Probab. 23, 230-250 (2013).
    • (2013) Ann. Appl. Probab. , vol.23 , pp. 230-250
    • Durrett, R.1
  • 27
    • 17744413756 scopus 로고
    • Model of effectively neutral mutations in which selective constraint is incorporated
    • Kimura, M. Model of effectively neutral mutations in which selective constraint is incorporated. Proc. Natl. Acad. Sci. USA 76, 3440-3444 (1979).
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 3440-3444
    • Kimura, M.1
  • 28
    • 0001654122 scopus 로고    scopus 로고
    • Development of neutral and nearly neutral theories
    • Ohta, T. & Gillespie, J.H. Development of neutral and nearly neutral theories. Theor. Popul. Biol. 49, 128-142 (1996).
    • (1996) Theor. Popul. Biol. , vol.49 , pp. 128-142
    • Ohta, T.1    Gillespie, J.H.2
  • 29
    • 27644465164 scopus 로고    scopus 로고
    • Refning molecular analysis in the pathways of colorectal carcinogenesis
    • Rowan, A. et al. Refning molecular analysis in the pathways of colorectal carcinogenesis. Clin. Gastroenterol. Hepatol. 3, 1115-1123 (2005).
    • (2005) Clin. Gastroenterol. Hepatol. , vol.3 , pp. 1115-1123
    • Rowan, A.1
  • 30
    • 84964314164 scopus 로고    scopus 로고
    • SubcloneSeeker: A computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization
    • Qiao, Y. et al. SubcloneSeeker: a computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization. Genome Biol. 15, 443 (2014).
    • (2014) Genome Biol. , vol.15 , pp. 443
    • Qiao, Y.1
  • 31
    • 84964313312 scopus 로고    scopus 로고
    • A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data
    • Li, B. & Li, J.Z. A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data. Genome Biol. 15, 473 (2014).
    • (2014) Genome Biol. , vol.15 , pp. 473
    • Li, B.1    Li, J.Z.2
  • 32
    • 84937046175 scopus 로고    scopus 로고
    • Fast and scalable inference of multi-sample cancer lineages
    • Popic, V. et al. Fast and scalable inference of multi-sample cancer lineages. Genome Biol. 16, 91 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 91
    • Popic, V.1
  • 33
    • 84940612958 scopus 로고    scopus 로고
    • Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma
    • Ross-Innes, C.S. et al. Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma. Nat. Genet. 47, 1038-1046 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 1038-1046
    • Ross-Innes, C.S.1
  • 34
    • 84907808265 scopus 로고    scopus 로고
    • Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing
    • Zhang, J. et al. Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing. Science 346, 256-259 (2014).
    • (2014) Science , vol.346 , pp. 256-259
    • Zhang, J.1
  • 35
    • 84907855592 scopus 로고    scopus 로고
    • Spatial and temporal diversity in genomic instability processes defnes lung cancer evolution
    • de Bruin, E.C. et al. Spatial and temporal diversity in genomic instability processes defnes lung cancer evolution. Science 346, 251-256 (2014).
    • (2014) Science , vol.346 , pp. 251-256
    • De Bruin, E.C.1
  • 36
    • 84892373020 scopus 로고    scopus 로고
    • Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma
    • Johnson, B.E. et al. Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma. Science 343, 189-193 (2014).
    • (2014) Science , vol.343 , pp. 189-193
    • Johnson, B.E.1
  • 37
    • 84923911546 scopus 로고    scopus 로고
    • Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution
    • Kim, H. et al. Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution. Genome Res. 25, 316-327 (2015).
    • (2015) Genome Res. , vol.25 , pp. 316-327
    • Kim, H.1
  • 38
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595 (1989).
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 39
    • 76749155514 scopus 로고    scopus 로고
    • A composite of multiple signals distinguishes causal variants in regions of positive selection
    • Grossman, S.R. et al. A composite of multiple signals distinguishes causal variants in regions of positive selection. Science 327, 883-886 (2010).
    • (2010) Science , vol.327 , pp. 883-886
    • Grossman, S.R.1
  • 40
    • 84897448471 scopus 로고    scopus 로고
    • Cancer evolution is associated with pervasive positive selection on globally expressed genes
    • Ostrow, S.L., Barshir, R., DeGregori, J., Yeger-Lotem, E. & Hershberg, R. Cancer evolution is associated with pervasive positive selection on globally expressed genes. PLoS Genet. 10, e1004239 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004239
    • Ostrow, S.L.1    Barshir, R.2    DeGregori, J.3    Yeger-Lotem, E.4    Hershberg, R.5
  • 41
    • 85000842884 scopus 로고    scopus 로고
    • The ecology and evolution of cancer: The ultra-microevolutionary process
    • Wu, C.-I., Wang, H.-Y., Ling, S. & Lu, X. The ecology and evolution of cancer: the ultra-microevolutionary process. Annu. Rev. Genet. 50, 347-369 (2016).
    • (2016) Annu. Rev. Genet. , vol.50 , pp. 347-369
    • Wu, C.-I.1    Wang, H.-Y.2    Ling, S.3    Lu, X.4
  • 42
    • 84885911072 scopus 로고    scopus 로고
    • Population genomics of rapid adaptation by soft selective sweeps
    • Messer, P.W. & Petrov, D.A. Population genomics of rapid adaptation by soft selective sweeps. Trends Ecol. Evol. 28, 659-669 (2013).
    • (2013) Trends Ecol. Evol. , vol.28 , pp. 659-669
    • Messer, P.W.1    Petrov, D.A.2
  • 43
    • 84975093395 scopus 로고    scopus 로고
    • Darwinian dynamics of intratumoral heterogeneity: Not solely random mutations but also variable environmental selection forces
    • Lloyd, M.C. et al. Darwinian dynamics of intratumoral heterogeneity: not solely random mutations but also variable environmental selection forces. Cancer Res. 76, 3136-3144 (2016).
    • (2016) Cancer Res. , vol.76 , pp. 3136-3144
    • Lloyd, M.C.1
  • 45
    • 84908032167 scopus 로고    scopus 로고
    • Non-cell- A utonomous driving of tumour growth supports sub-clonal heterogeneity
    • Marusyk, A. et al. Non-cell- A utonomous driving of tumour growth supports sub-clonal heterogeneity. Nature 514, 54-58 (2014).
    • (2014) Nature , vol.514 , pp. 54-58
    • Marusyk, A.1
  • 46
    • 84897482887 scopus 로고    scopus 로고
    • Tumour cell heterogeneity maintained by cooperating subclones in Wnt-driven mammary cancers
    • Cleary, A.S., Leonard, T.L., Gestl, S.A. & Gunther, E.J. Tumour cell heterogeneity maintained by cooperating subclones in Wnt-driven mammary cancers. Nature 508, 113-117 (2014).
    • (2014) Nature , vol.508 , pp. 113-117
    • Cleary, A.S.1    Leonard, T.L.2    Gestl, S.A.3    Gunther, E.J.4
  • 47
    • 84874025843 scopus 로고    scopus 로고
    • Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
    • Cibulskis, K. et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 213-219
    • Cibulskis, K.1
  • 48
    • 84924336542 scopus 로고    scopus 로고
    • TITAN: Inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
    • Ha, G. et al. TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data. Genome Res. 24, 1881-1893 (2014).
    • (2014) Genome Res. , vol.24 , pp. 1881-1893
    • Ha, G.1
  • 49
    • 84941201227 scopus 로고    scopus 로고
    • A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity
    • Waclaw, B. et al. A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity. Nature 525, 261-264 (2015).
    • (2015) Nature , vol.525 , pp. 261-264
    • Waclaw, B.1
  • 50
    • 84863000299 scopus 로고    scopus 로고
    • The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers
    • Diaz, L.A. Jr. et al. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature 486, 537-540 (2012).
    • (2012) Nature , vol.486 , pp. 537-540
    • Diaz, L.A.1
  • 51
    • 78249261016 scopus 로고    scopus 로고
    • Accumulation of driver and passenger mutations during tumor progression
    • Bozic, I. et al. Accumulation of driver and passenger mutations during tumor progression. Proc. Natl. Acad. Sci. USA 107, 18545-18550 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 18545-18550
    • Bozic, I.1
  • 52
    • 52549087785 scopus 로고    scopus 로고
    • Cancer stem cells in solid tumours: Accumulating evidence and unresolved questions
    • Visvader, J.E. & Lindeman, G.J. Cancer stem cells in solid tumours: accumulating evidence and unresolved questions. Nat. Rev. Cancer 8, 755-768 (2008).
    • (2008) Nat. Rev. Cancer , vol.8 , pp. 755-768
    • Visvader, J.E.1    Lindeman, G.J.2
  • 53
    • 0031479641 scopus 로고    scopus 로고
    • Data-based choice of histogram bin width
    • Wand, M.P. Data-based choice of histogram bin width. Am. Stat. 51, 59 (1997).
    • (1997) Am. Stat. , vol.51 , pp. 59
    • Wand, M.P.1
  • 55
    • 56249113343 scopus 로고    scopus 로고
    • Building predictive models in R using the caret package
    • Kuhn, M. Building predictive models in R using the caret package. J. Stat. Softw. 28, 1-26 (2008).
    • (2008) J. Stat. Softw. , vol.28 , pp. 1-26
    • Kuhn, M.1


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