RIsearch2: Suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets

Nucleic Acids Research

Volumn 45, Issue 8, 2017, Pages

  Alkan, Ferhat ^a   Wenzel, Anne ^a   Palasca, Oana ^a,b   Kerpedjiev, Peter ^c,g   Rudebeck, Anders Frost ^a   Stadler, Peter F ^a,c,d,e,f   Hofacker, Ivo L ^a,c   Gorodkin, Jan ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b University of Copenhagen   (Denmark)

^c UNIVERSITY OF VIENNA   (Austria)

^d UNIVERSITY OF LEIPZIG   (Germany)

^e MAX PLANCK INSTITUTE FOR MATHEMATICS IN THE SCIENCES   (Germany)

^f SANTA FE INSTITUTE   (United States)

^g HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; RNA; SMALL INTERFERING RNA; TRANSCRIPTOME; UNTRANSLATED RNA;

ARTICLE; BASE PAIRING; CONTROLLED STUDY; GENETIC TRANSFECTION; GENOME; GENOME-WIDE ASSOCIATION STUDY; MATHEMATICAL MODEL; PREDICTION; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN MICROARRAY; PROTEIN RNA BINDING; PROTEIN TARGETING; RLSEARCH2; RNA RNA INTERACTION; RNA SEQUENCE; RNA TRANSCRIPTION; ALGORITHM; BIOLOGICAL MODEL; GENETICS; HUMAN; METABOLISM; NUCLEOTIDE SEQUENCE; SOFTWARE; STATISTICAL MODEL; TUMOR CELL LINE;

ALGORITHMS; BASE PAIRING; BASE SEQUENCE; CELL LINE, TUMOR; HUMANS; MODELS, GENETIC; MODELS, STATISTICAL; RNA, SMALL INTERFERING; RNA, UNTRANSLATED; SOFTWARE; TRANSCRIPTOME;

EID: 85020225373     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw1325     Document Type: Article

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