메뉴 건너뛰기




Volumn 9, Issue 2, 2017, Pages 351-362

In Silico Identification of Candidate Genes for Fertility Restoration in Cytoplasmic Male Sterile Perennial Ryegrass (Lolium perenne L.)

Author keywords

Cytoplasmic male sterility (CMS); Hybrid breeding; Pentatricopeptide repeat (PPR) proteins; Perennial ryegrass (Lolium perenne L.); Restoration of fertility; Restorer of fertility like PPR (RFL)

Indexed keywords

GENETICS; LOLIUM; MOLECULAR CLONING; PLANT GENE; PLANT INFERTILITY;

EID: 85019699464     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evw047     Document Type: Article
Times cited : (25)

References (92)
  • 1
    • 0020988321 scopus 로고
    • Cytoplasmic male sterility in barley. XV. PI 296897 as a restorer of fertility in msml and msm2 cytoplasms
    • Ahokas H. 1983. Cytoplasmic male sterility in barley. XV. PI 296897 as a restorer of fertility in msml and msm2 cytoplasms. Hereditas 99(1): 157-159.
    • (1983) Hereditas , vol.99 , Issue.1 , pp. 157-159
    • Ahokas, H.1
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, et al. 1990. Basic local alignment search tool. J Mol Biol. 215(3): 403-410.
    • (1990) J Mol Biol. , vol.215 , Issue.3 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 33845608810 scopus 로고    scopus 로고
    • The multifarious roles of PPR proteins in plant mitochondrial gene expression
    • Andres C, Lurin C, Small I. 2007. The multifarious roles of PPR proteins in plant mitochondrial gene expression. Physiol Plant. 129(1): 14-22.
    • (2007) Physiol Plant. , vol.129 , Issue.1 , pp. 14-22
    • Andres, C.1    Lurin, C.2    Small, I.3
  • 4
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • Anisimova M, Gascuel O. 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol. 55(4): 539-552.
    • (2006) Syst Biol. , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 5
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using p-values: Application to sequence homology searches
    • Bailey TL, Gribskov M. 1998. Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14(1): 48-54.
    • (1998) Bioinformatics , vol.14 , Issue.1 , pp. 48-54
    • Bailey, T.L.1    Gribskov, M.2
  • 6
    • 84899745039 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins in plants
    • Merchant SS, editor
    • Barkan A, Small I. 2014. Pentatricopeptide repeat proteins in plants. In: Merchant SS, editor. Annual review of plant biology. Vol. 65. p. 415-442.
    • (2014) Annual Review of Plant Biology , vol.65 , pp. 415-442
    • Barkan, A.1    Small, I.2
  • 7
    • 77749292909 scopus 로고    scopus 로고
    • The nuclear component of a cytonuclear hybrid incompatibility in mimulus maps to a cluster of pentatricopeptide repeat genes
    • Barr CM, Fishman L. 2010. The nuclear component of a cytonuclear hybrid incompatibility in Mimulus maps to a cluster of pentatricopeptide repeat genes. Genetics 184(2): 455-465.
    • (2010) Genetics , vol.184 , Issue.2 , pp. 455-465
    • Barr, C.M.1    Fishman, L.2
  • 8
    • 0036678039 scopus 로고    scopus 로고
    • A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants
    • Bentolila S, Alfonso AA, Hanson MR. 2002. A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants. Proc Natl Acad Sci USA. 99: 10887-10892.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 10887-10892
    • Bentolila, S.1    Alfonso, A.A.2    Hanson, M.R.3
  • 9
    • 84921419423 scopus 로고    scopus 로고
    • Molecular mapping of fertility restorer gene of an alloplasmic CMS system in brassica juncea containing moricandia arvensis cytoplasm
    • Bisht DS, Chamola R, Nath M, Bhat SR. 2015. Molecular mapping of fertility restorer gene of an alloplasmic CMS system in Brassica juncea containing Moricandia arvensis cytoplasm. Mol Breed. 35(1): 1-11.
    • (2015) Mol Breed. , vol.35 , Issue.1 , pp. 1-11
    • Bisht, D.S.1    Chamola, R.2    Nath, M.3    Bhat, S.R.4
  • 10
    • 84955136918 scopus 로고    scopus 로고
    • A synteny-based draft genome sequence of the forage grass lolium perenne
    • Byrne S, et al. 2015. A synteny-based draft genome sequence of the forage grass Lolium perenne. The Plant J. 84(4): 816-826.
    • (2015) The Plant J. , vol.84 , Issue.4 , pp. 816-826
    • Byrne, S.1
  • 11
    • 84903861954 scopus 로고    scopus 로고
    • Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)
    • Cannarozzi G, et al. 2014. Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef). BMC Genomics 15: 581.
    • (2014) BMC Genomics , vol.15 , pp. 581
    • Cannarozzi, G.1
  • 12
    • 80054121211 scopus 로고    scopus 로고
    • RNA editing in plant organelles. Why make it easy?
    • Castandet B, Araya A. 2011. RNA editing in plant organelles. Why make it easy? Biochemistry (Mosc) 76(8): 924-931.
    • (2011) Biochemistry (Mosc) , vol.76 , Issue.8 , pp. 924-931
    • Castandet, B.1    Araya, A.2
  • 13
    • 33846470605 scopus 로고    scopus 로고
    • Cytoplasmic male sterility: A window to the world of plant mitochondrial-nuclear interactions
    • Chase CD 2007. Cytoplasmic male sterility: a window to the world of plant mitochondrial-nuclear interactions. Trends Genet. 23(2): 81-90.
    • (2007) Trends Genet. , vol.23 , Issue.2 , pp. 81-90
    • Chase, C.D.1
  • 16
    • 33750314083 scopus 로고    scopus 로고
    • TreeDyn: Towards dynamic graphics and annotations for analyses of trees
    • Chevenet F, et al. 2006. TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics 7(1): 439.
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 439
    • Chevenet, F.1
  • 17
    • 84885147813 scopus 로고    scopus 로고
    • Systematic study of subcellular localization of arabidopsis PPR proteins confirms a massive targeting to organelles
    • Colcombet J, et al. 2013. Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles. RNA Biol. 10(9): 1557-1575.
    • (2013) RNA Biol. , vol.10 , Issue.9 , pp. 1557-1575
    • Colcombet, J.1
  • 18
    • 0012940793 scopus 로고
    • Induction of cytoplasmic male-sterility into ryegrass (Lolium perenne)
    • Connoly V, Wright-Turner R. 1984. Induction of cytoplasmic male-sterility into ryegrass (Lolium perenne). Theor Appl Genet. 68(5): 449-453.
    • (1984) Theor Appl Genet. , vol.68 , Issue.5 , pp. 449-453
    • Connoly, V.1    Wright-Turner, R.2
  • 19
    • 0010605686 scopus 로고
    • Asymmetric protoplast fusion aimed at intraspecific transfer of cytoplasmic male sterility (CMS) in lolium perenne L
    • Creemersmolenaar J, Hall RD, Krens FA. 1992. Asymmetric protoplast fusion aimed at intraspecific transfer of cytoplasmic male sterility (CMS) in Lolium perenne L. Theor Appl Genet. 84(5-6): 763-770.
    • (1992) Theor Appl Genet. , vol.84 , Issue.5-6 , pp. 763-770
    • Creemersmolenaar, J.1    Hall, R.D.2    Krens, F.A.3
  • 20
    • 0029890664 scopus 로고    scopus 로고
    • The rf2 nuclear restorer gene of male-sterile T-cytoplasm maize
    • Cui XQ, Wise RP, Schnable PS. 1996. The rf2 nuclear restorer gene of male-sterile T-cytoplasm maize. Science 272(5266): 1334-1336.
    • (1996) Science , vol.272 , Issue.5266 , pp. 1334-1336
    • Cui, X.Q.1    Wise, R.P.2    Schnable, P.S.3
  • 21
    • 84885108311 scopus 로고    scopus 로고
    • The Rf and Rf-like PPR in higher plants, a fast-evolving subclass of PPR genes
    • Dahan J, Mireau H. 2013. The Rf and Rf-like PPR in higher plants, a fast-evolving subclass of PPR genes. RNA Biol. 10(9): 1469-1476.
    • (2013) RNA Biol. , vol.10 , Issue.9 , pp. 1469-1476
    • Dahan, J.1    Mireau, H.2
  • 22
    • 48249102000 scopus 로고    scopus 로고
    • Phylogeny.fr: Robust phylogenetic analysis for the non-specialist
    • Dereeper A, et al. 2008. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 36: 465-469.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 465-469
    • Dereeper, A.1
  • 23
    • 10744221083 scopus 로고    scopus 로고
    • Identification of the fertility restoration locus, rfo, in radish, as a member of the pentatricopeptide-repeat protein family
    • Desloire S, et al. 2003. Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family. EMBO Rep. 4(6): 588-594.
    • (2003) EMBO Rep. , vol.4 , Issue.6 , pp. 588-594
    • Desloire, S.1
  • 24
    • 0035220732 scopus 로고    scopus 로고
    • Biotechnology in the 1930s: The development of hybrid maize
    • Duvick DN 2001. Biotechnology in the 1930s: the development of hybrid maize. Nat Rev Genet. 2(1): 69-74.
    • (2001) Nat Rev Genet. , vol.2 , Issue.1 , pp. 69-74
    • Duvick, D.N.1
  • 25
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5): 1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 26
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright AJ, van Dongen S, Ouzounis CA. 2002. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30(7): 1575-1584.
    • (2002) Nucleic Acids Res. , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 27
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn RD, Clements J, Eddy SR. 2011. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 39: 29-37.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 29-37
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 28
    • 84858221706 scopus 로고    scopus 로고
    • Ensembl 2012
    • Flicek P, et al. 2012. Ensembl 2012. Nucleic Acids Res. 40(1): 84-90.
    • (2012) Nucleic Acids Res. , vol.40 , Issue.1 , pp. 84-90
    • Flicek, P.1
  • 29
    • 79952166885 scopus 로고    scopus 로고
    • Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
    • Fujii S, Bond CS, Small I. 2011. Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Proc Natl Acad Sci U S A. 108(4): 1723-1728.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.4 , pp. 1723-1728
    • Fujii, S.1    Bond, C.S.2    Small, I.3
  • 30
    • 79957886185 scopus 로고    scopus 로고
    • The evolution of RNA editing and pentatricopeptide repeat genes
    • Fujii S, Small I. 2011. The evolution of RNA editing and pentatricopeptide repeat genes. New Phytol. 191(1): 37-47.
    • (2011) New Phytol. , vol.191 , Issue.1 , pp. 37-47
    • Fujii, S.1    Small, I.2
  • 31
    • 34250747504 scopus 로고    scopus 로고
    • Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection
    • Geddy R, Brown GG. 2007. Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection. BMC Genomics 8: 13.
    • (2007) BMC Genomics , vol.8 , pp. 13
    • Geddy, R.1    Brown, G.G.2
  • 32
    • 0033592907 scopus 로고    scopus 로고
    • RNA editing in arabidopsis mitochondria effects 441 C to U changes in ORFs
    • Giege P, Brennicke A. 1999. RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs. Proc Natl Acad Sci U S A. 96(26): 15324-15329.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.26 , pp. 15324-15329
    • Giege, P.1    Brennicke, A.2
  • 33
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52(5): 696-704.
    • (2003) Syst Biol. , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 34
    • 84866912822 scopus 로고    scopus 로고
    • Development of conserved ortholog set markers linked to the restorer gene rfp1 in rye
    • Hackauf B, Korzun V, Wortmann H, Wilde P, Whehling P. 2012. Development of conserved ortholog set markers linked to the restorer gene Rfp1 in rye. Mol Breed. 30: 1507-1518.
    • (2012) Mol Breed. , vol.30 , pp. 1507-1518
    • Hackauf, B.1    Korzun, V.2    Wortmann, H.3    Wilde, P.4    Whehling, P.5
  • 35
    • 73249140998 scopus 로고    scopus 로고
    • A study of new arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites
    • Hammani K, et al. 2009. A study of new arabidopsis chloroplast rna editing mutants reveals general features of editing factors and their target sites. Plant Cell 21(11): 3686-3699.
    • (2009) Plant Cell , vol.21 , Issue.11 , pp. 3686-3699
    • Hammani, K.1
  • 36
    • 2942696655 scopus 로고    scopus 로고
    • Interactions of mitochondrial and nuclear genes that affect male gametophyte development
    • Hanson MR, Bentolila S. 2004. Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell 16: 154-S69.
    • (2004) Plant Cell , vol.16 , pp. S154-S169
    • Hanson, M.R.1    Bentolila, S.2
  • 38
    • 84863260667 scopus 로고    scopus 로고
    • The rice pentatricopeptide repeat protein RF5 restores fertility in hong-lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162
    • Hu J, et al. 2012. The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162. Plant Cell 24(1): 109-122.
    • (2012) Plant Cell , vol.24 , Issue.1 , pp. 109-122
    • Hu, J.1
  • 39
    • 84901842334 scopus 로고    scopus 로고
    • Genetics and biology of cytoplasmic male sterility and its applications in forage and turf grass breeding
    • Islam MS, et al. 2014. Genetics and biology of cytoplasmic male sterility and its applications in forage and turf grass breeding. Plant Breed. 133(3): 299-312.
    • (2014) Plant Breed. , vol.133 , Issue.3 , pp. 299-312
    • Islam, M.S.1
  • 40
    • 79251575609 scopus 로고    scopus 로고
    • The fertility restorer gene, rf2, for lead rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein
    • Itabashi E, et al. 2011. The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein. Plant J. 65(3): 359-367.
    • (2011) Plant J. , vol.65 , Issue.3 , pp. 359-367
    • Itabashi, E.1
  • 41
    • 77649335821 scopus 로고    scopus 로고
    • Development and evaluation of broadly applicable markers for restorer-of-fertility in pepper
    • Jo YD, et al. 2010. Development and evaluation of broadly applicable markers for Restorer-of-fertility in pepper. Mol Breed. 25(2): 187-201.
    • (2010) Mol Breed. , vol.25 , Issue.2 , pp. 187-201
    • Jo, Y.D.1
  • 42
    • 84899518211 scopus 로고    scopus 로고
    • InterProScan 5: Genome-scale protein function classification
    • Jones P, et al. 2014. InterProScan 5: genome-scale protein function classification. Bioinformatics 30(9): 1236-1240.
    • (2014) Bioinformatics , vol.30 , Issue.9 , pp. 1236-1240
    • Jones, P.1
  • 43
    • 79961168783 scopus 로고    scopus 로고
    • Mapping and characterization of Rf 5: A new gene conditioning pollen fertility restoration in A1 and A2 cytoplasm in sorghum (Sorghum bicolor (L.) moench)
    • Jordan DR, et al. 2011. Mapping and characterization of Rf 5: a new gene conditioning pollen fertility restoration in A1 and A2 cytoplasm in sorghum (Sorghum bicolor (L.) Moench). Theor Appl Genet. 123(3): 383-396.
    • (2011) Theor Appl Genet. , vol.123 , Issue.3 , pp. 383-396
    • Jordan, D.R.1
  • 44
    • 49249105375 scopus 로고    scopus 로고
    • Suppression mechanism of mitochondrial ORF79 accumulation by rf1 protein in BT-type cytoplasmic male sterile rice
    • Kazama T, Nakamura T, Watanabe M, Sugita M, Toriyama K. 2008. Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J. 55: 619-628.
    • (2008) Plant J. , vol.55 , pp. 619-628
    • Kazama, T.1    Nakamura, T.2    Watanabe, M.3    Sugita, M.4    Toriyama, K.5
  • 45
    • 84957535353 scopus 로고    scopus 로고
    • A fertility restorer gene, rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein
    • Kazama T, Toriyama K. 2014. A fertility restorer gene, Rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein. Rice 7(1): 1-5.
    • (2014) Rice , vol.7 , Issue.1 , pp. 1-5
    • Kazama, T.1    Toriyama, K.2
  • 46
    • 9444292699 scopus 로고
    • Cytoplasmic male sterility (CMS) in lolium perenne L.: 1. Development of a diagnostic probe for the male-sterile cytoplasm
    • Kiang AS, et al. 1993. Cytoplasmic male sterility (CMS) in Lolium perenne L.: 1. Development of a diagnostic probe for the male-sterile cytoplasm. Theor Appl Genet. 86(6): 781-787.
    • (1993) Theor Appl Genet. , vol.86 , Issue.6 , pp. 781-787
    • Kiang, A.S.1
  • 47
    • 0029830103 scopus 로고    scopus 로고
    • Cytoplasmic male sterility (CMS) in lolium perenne L.2. The mitochondrial genome of a CMS line is rearranged and contains a chimaeric atp9 gene
    • Kiang AS, Kavanagh TA. 1996. Cytoplasmic male sterility (CMS) in Lolium perenne L.2. The mitochondrial genome of a CMS line is rearranged and contains a chimaeric atp9 gene. Theor Appl Genet. 92(3-4): 308-315.
    • (1996) Theor Appl Genet. , vol.92 , Issue.3-4 , pp. 308-315
    • Kiang, A.S.1    Kavanagh, T.A.2
  • 48
    • 84936845722 scopus 로고    scopus 로고
    • Post-translational mechanisms are associated with fertility restoration of cytoplasmic male sterility in sugar beet (Beta vulgaris)
    • Kitazaki K, et al. 2015. Post-translational mechanisms are associated with fertility restoration of cytoplasmic male sterility in sugar beet (Beta vulgaris). Plant J. 83(2): 290-299.
    • (2015) Plant J. , vol.83 , Issue.2 , pp. 290-299
    • Kitazaki, K.1
  • 49
    • 29144431606 scopus 로고    scopus 로고
    • Fertility restorer locus rf1 of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12
    • Klein RR, et al. 2006. Fertility restorer locus Rf1 of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12. Theor Appl Genet. 112(2): 388-388.
    • (2006) Theor Appl Genet. , vol.112 , Issue.2 , pp. 388
    • Klein, R.R.1
  • 50
    • 79961017337 scopus 로고    scopus 로고
    • Male sterility-inducing mitochondrial genomes: How do they differ?
    • Kubo T, et al. 2011. Male sterility-inducing mitochondrial genomes: how do they differ? Crit Rev Plant Sci. 30(4): 378-400.
    • (2011) Crit Rev Plant Sci. , vol.30 , Issue.4 , pp. 378-400
    • Kubo, T.1
  • 51
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ, Roos DS. 2003. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13(9): 2178-2189.
    • (2003) Genome Res. , vol.13 , Issue.9 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 52
    • 84871232533 scopus 로고    scopus 로고
    • Phylogenetic genomewide comparisons of the pentatricopeptide repeat gene family in indica and japonica rice
    • Li SB, et al. 2012. Phylogenetic genomewide comparisons of the pentatricopeptide repeat gene family in indica and japonica rice. Biochem Genet. 50(11-12): 978-989.
    • (2012) Biochem Genet. , vol.50 , Issue.11-12 , pp. 978-989
    • Li, S.B.1
  • 53
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li WZ, Godzik A. 2006. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22(13): 1658-1659.
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1658-1659
    • Li, W.Z.1    Godzik, A.2
  • 54
    • 84870234975 scopus 로고    scopus 로고
    • Hybrid breeding in autogamous cereals
    • Longin CFH, et al. 2012. Hybrid breeding in autogamous cereals. Theor Appl Genet. 125(6): 1087-1096.
    • (2012) Theor Appl Genet. , vol.125 , Issue.6 , pp. 1087-1096
    • Longin, C.F.H.1
  • 55
    • 84878610133 scopus 로고    scopus 로고
    • A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice
    • 573-U157
    • Luo D, et al. 2013. A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice. Nat Genet. 45(5): 573-U157.
    • (2013) Nat Genet. , vol.45 , Issue.5
    • Luo, D.1
  • 56
    • 4043172772 scopus 로고    scopus 로고
    • Genome-wide analysis of arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
    • Lurin C, et al. 2004. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 16(8): 2089-2103.
    • (2004) Plant Cell , vol.16 , Issue.8 , pp. 2089-2103
    • Lurin, C.1
  • 57
    • 0029025546 scopus 로고
    • Inheretence and chromosomal locations of male fertility restoring gene transferred from aegilops umbellulata zhuk. to triticum aestivum L
    • Ma ZQ, Zhao YH, Sorrells ME. 1995. Inheretence and chromosomal locations of male fertility restoring gene transferred from Aegilops umbellulata Zhuk. to Triticum aestivum L. Mol Gen Genet. 247: 351-357.
    • (1995) Mol Gen Genet. , vol.247 , pp. 351-357
    • Ma, Z.Q.1    Zhao, Y.H.2    Sorrells, M.E.3
  • 58
    • 70350536855 scopus 로고    scopus 로고
    • Chromosome engineering in wheat to restore male fertility in the msH1 CMS system
    • Martin AC, et al. 2009. Chromosome engineering in wheat to restore male fertility in the msH1 CMS system. Mol Breed. 24(4): 397-408.
    • (2009) Mol Breed. , vol.24 , Issue.4 , pp. 397-408
    • Martin, A.C.1
  • 59
    • 47249115215 scopus 로고    scopus 로고
    • The mitochondrial genome of a cytoplasmic male sterile line of perennial ryegrass (Lolium perenne L.) contains an integrated linear plasmid-like element
    • McDermott P, Connolly V, Kavanagh T. 2008. The mitochondrial genome of a cytoplasmic male sterile line of perennial ryegrass (Lolium perenne L.) contains an integrated linear plasmid-like element. Theor Appl Genet. 117(3): 459-470.
    • (2008) Theor Appl Genet. , vol.117 , Issue.3 , pp. 459-470
    • McDermott, P.1    Connolly, V.2    Kavanagh, T.3
  • 60
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the ensembl API and SNP effect predictor
    • McLaren W, et al. 2010. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics 26(16): 2069-2070.
    • (2010) Bioinformatics , vol.26 , Issue.16 , pp. 2069-2070
    • McLaren, W.1
  • 61
    • 75849152528 scopus 로고    scopus 로고
    • The international conference on "Heterosis in plants"
    • Melchinger AE 2010. The International Conference on "Heterosis in Plants". Theor Appl Genet. 120(2): 201-203.
    • (2010) Theor Appl Genet. , vol.120 , Issue.2 , pp. 201-203
    • Melchinger, A.E.1
  • 62
    • 84934435730 scopus 로고    scopus 로고
    • Rf8-mediated T-Transcript accumulation coincides with a pentatricopeptide repeat cluster on maize chromosome 2L
    • Meyer J, Pei D, Wise RP. 2011. Rf8-Mediated T-Transcript accumulation coincides with a pentatricopeptide repeat cluster on maize chromosome 2L. Plant Genome 4(3): 283-299.
    • (2011) Plant Genome , vol.4 , Issue.3 , pp. 283-299
    • Meyer, J.1    Pei, D.2    Wise, R.P.3
  • 63
    • 23144455729 scopus 로고    scopus 로고
    • OrfPredictor: Predicting protein-coding regions in EST-derived sequences
    • Min XJ, et al. 2005. OrfPredictor: predicting protein-coding regions in EST-derived sequences. Nucleic Acids Res. 33: 677-680.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 677-680
    • Min, X.J.1
  • 64
    • 44649133995 scopus 로고    scopus 로고
    • On the expansion of the pentatricopeptide repeat gene family in plants
    • O'Toole N, et al. 2008. On the expansion of the pentatricopeptide repeat gene family in plants. Mol Biol Evol. 25(6): 1120-1128.
    • (2008) Mol Biol Evol. , vol.25 , Issue.6 , pp. 1120-1128
    • O'Toole, N.1
  • 65
    • 62549149035 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in arabidopsis chloroplasts
    • Okuda K, et al. 2009. Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in arabidopsis chloroplasts. Plant Cell 21(1): 146-156.
    • (2009) Plant Cell , vol.21 , Issue.1 , pp. 146-156
    • Okuda, K.1
  • 66
    • 84862224565 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis-acting elements in plastids
    • Okuda K, Shikanai T. 2012. A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis-acting elements in plastids. Nucleic Acids Res. 40(11): 5052-5064.
    • (2012) Nucleic Acids Res. , vol.40 , Issue.11 , pp. 5052-5064
    • Okuda, K.1    Shikanai, T.2
  • 67
    • 84942883192 scopus 로고    scopus 로고
    • Design of an F1 hybrid breeding strategy for ryegrasses based on selection of self-incompatibility locus-specific alleles
    • Pembleton LW, et al. 2015. Design of an F1 hybrid breeding strategy for ryegrasses based on selection of self-incompatibility locus-specific alleles. Front Plant Sci. 6: 764-764.
    • (2015) Front Plant Sci. , vol.6 , pp. 764
    • Pembleton, L.W.1
  • 68
    • 84875718824 scopus 로고    scopus 로고
    • The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)
    • Peng Z, et al. 2013. The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla). Nat Genet. 45(4): 456-461.
    • (2013) Nat Genet. , vol.45 , Issue.4 , pp. 456-461
    • Peng, Z.1
  • 69
    • 84873261304 scopus 로고    scopus 로고
    • The perennial ryegrass GenomeZipper: Targeted use of genome resources for comparative grass genomics
    • Pfeifer M, et al. 2013. The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics. Plant Physiol. 161(2): 571-582.
    • (2013) Plant Physiol. , vol.161 , Issue.2 , pp. 571-582
    • Pfeifer, M.1
  • 70
    • 0037379790 scopus 로고    scopus 로고
    • Mechanism underlying regulated expression of RFL, a conserved transcription factor, in the developing rice inflorescence
    • Prasad K, Kushalappa K, Vijayraghavan U. 2003. Mechanism underlying regulated expression of RFL, a conserved transcription factor, in the developing rice inflorescence. Mech Dev. 120(4): 491-502.
    • (2003) Mech Dev. , vol.120 , Issue.4 , pp. 491-502
    • Prasad, K.1    Kushalappa, K.2    Vijayraghavan, U.3
  • 71
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the european molecular biology open software suite. Trends in Genet. 16(6): 276-277.
    • (2000) Trends in Genet. , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 72
    • 84878015090 scopus 로고    scopus 로고
    • Orthology guided assembly in highly heterozygous crops: Creating a reference transcriptome to uncover genetic diversity in lolium perenne
    • Ruttink T, et al. 2013. Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne. Plant Biotechnol J. 11(5): 605-617.
    • (2013) Plant Biotechnol J. , vol.11 , Issue.5 , pp. 605-617
    • Ruttink, T.1
  • 73
    • 84929517488 scopus 로고    scopus 로고
    • A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes
    • Schallenberg-Ruedinger M, et al. 2013. A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes. RNA Biol. 10(9): 1549-1556.
    • (2013) RNA Biol. , vol.10 , Issue.9 , pp. 1549-1556
    • Schallenberg-Ruedinger, M.1
  • 74
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: A socket set for organelle gene expression
    • Schmitz-Linneweber C, Small I. 2008. Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13(12): 663-670.
    • (2008) Trends Plant Sci. , vol.13 , Issue.12 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 75
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable PS, et al. 2009. The B73 maize genome: complexity, diversity, and dynamics. Science 326(5956): 1112-1115.
    • (2009) Science , vol.326 , Issue.5956 , pp. 1112-1115
    • Schnable, P.S.1
  • 76
    • 0032080597 scopus 로고    scopus 로고
    • The molecular basis of cytoplasmic male sterility and fertility restoration
    • Schnable PS, Wise RP. 1998. The molecular basis of cytoplasmic male sterility and fertility restoration. Trends Plant Sci. 3(5): 175-180.
    • (1998) Trends Plant Sci. , vol.3 , Issue.5 , pp. 175-180
    • Schnable, P.S.1    Wise, R.P.2
  • 77
    • 79955923548 scopus 로고    scopus 로고
    • Perspective of hybrid wheat research A review
    • Singh SK, Chatrath R, Mishra B. 2010. Perspective of hybrid wheat research A review. Indian J Agr Sci. 80(12): 1013-1027.
    • (2010) Indian J Agr Sci. , vol.80 , Issue.12 , pp. 1013-1027
    • Singh, S.K.1    Chatrath, R.2    Mishra, B.3
  • 78
    • 84856483430 scopus 로고    scopus 로고
    • Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates
    • Sloan DB, et al. 2012. Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. PLoS Biol. 10(1): 53.
    • (2012) PLoS Biol. , vol.10 , Issue.1 , pp. 53
    • Sloan, D.B.1
  • 79
    • 84887624341 scopus 로고    scopus 로고
    • Organelle transcriptomes: Products of a deconstructed genome
    • Small I, Rackham O, Filipovska A. 2013. Organelle transcriptomes: products of a deconstructed genome. Curr Opin Microbiol. 16(5): 652-658.
    • (2013) Curr Opin Microbiol. , vol.16 , Issue.5 , pp. 652-658
    • Small, I.1    Rackham, O.2    Filipovska, A.3
  • 80
    • 77952149904 scopus 로고    scopus 로고
    • The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript
    • Tasaki E, Hattori M, Sugita M. 2010. The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript. Plant J. 62(4): 560-570.
    • (2010) Plant J. , vol.62 , Issue.4 , pp. 560-570
    • Tasaki, E.1    Hattori, M.2    Sugita, M.3
  • 81
    • 84868191956 scopus 로고    scopus 로고
    • Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria
    • Toda T, et al. 2012. Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria. Plant J. 72(3): 450-460.
    • (2012) Plant J. , vol.72 , Issue.3 , pp. 450-460
    • Toda, T.1
  • 82
    • 77950658346 scopus 로고    scopus 로고
    • Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
    • Tsai IJ, Otto TD, Berriman M. 2010. Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol. 11(4): R41.
    • (2010) Genome Biol. , vol.11 , Issue.4 , pp. R41
    • Tsai, I.J.1    Otto, T.D.2    Berriman, M.3
  • 83
    • 84925481606 scopus 로고    scopus 로고
    • High-resolution genetic mapping and physical mapconstruction for the fertility restorer rfm1 locus in barley
    • Ui H, et al. 2015. High-resolution genetic mapping and physical mapconstruction for the fertility restorer Rfm1 locus in barley. Theor Appl Genet. 128: 283-290.
    • (2015) Theor Appl Genet. , vol.128 , pp. 283-290
    • Ui, H.1
  • 84
    • 62549107493 scopus 로고    scopus 로고
    • Characterization of raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for ogura cytoplasmic male sterility
    • Uyttewaal M, et al. 2008. Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility. Plant Cell 20: 3331-3345.
    • (2008) Plant Cell , vol.20 , pp. 3331-3345
    • Uyttewaal, M.1
  • 87
    • 33646835190 scopus 로고    scopus 로고
    • Cytoplasmic male sterility of rice with BoroII cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing
    • Wang Z, Zon Y, Li X. 2006. Cytoplasmic male sterility of rice with BoroII cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell 18: 676-687.
    • (2006) Plant Cell , vol.18 , pp. 676-687
    • Wang, Z.1    Zon, Y.2    Li, X.3
  • 88
    • 84891526426 scopus 로고    scopus 로고
    • Hybrid breeding in wheat: Technologies to improve hybrid wheat seed production
    • Whitford R, et al. 2013. Hybrid breeding in wheat: technologies to improve hybrid wheat seed production. J Exp Bot. 64(18): 5411-5428.
    • (2013) J Exp Bot. , vol.64 , Issue.18 , pp. 5411-5428
    • Whitford, R.1
  • 89
    • 0000232891 scopus 로고
    • Breeding perennial ryegrass for agriculture
    • Wilkins PW 1991. Breeding perennial ryegrass for agriculture. Euphytica 52(3): 201-214.
    • (1991) Euphytica , vol.52 , Issue.3 , pp. 201-214
    • Wilkins, P.W.1
  • 90
    • 0002724657 scopus 로고
    • Cytoplasmic male sterility in ryegrass (Lolium spp.) detected after intergenic hybridization
    • Wit F. 1974. Cytoplasmic male sterility in ryegrass (Lolium spp.) detected after intergenic hybridization. Euphytica 23: 31-38.
    • (1974) Euphytica , vol.23 , pp. 31-38
    • Wit, F.1
  • 91
    • 0343578775 scopus 로고
    • Status of hybrid rice research and development. Hybrid rice
    • 1986 October 6-10; Changsha, China
    • Yuan LP, Virmani SS. 1988. Status of hybrid rice research and development. Hybrid rice. Proceedings of an international symposium; 1986 October 6-10; Changsha, China. p. 7-24.
    • (1988) Proceedings of an International Symposium , pp. 7-24
    • Yuan, L.P.1    Virmani, S.S.2
  • 92
    • 64749105292 scopus 로고    scopus 로고
    • A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of arabidopsis thaliana
    • Zehrmann A, et al. 2009. A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. Plant Cell 21(2): 558-567.
    • (2009) Plant Cell , vol.21 , Issue.2 , pp. 558-567
    • Zehrmann, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.