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Volumn 161, Issue 2, 2013, Pages 571-582

The perennial ryegrass genomezipper: Targeted use of genome resources for comparative grass genomics

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EID: 84873261304     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.112.207282     Document Type: Article
Times cited : (74)

References (61)
  • 1
    • 85027958050 scopus 로고    scopus 로고
    • QTL analyses and comparative genetic mapping of frost tolerance, winter survival and drought tolerance in meadow fescue (Festuca pratensis Huds.)
    • Alm V, Busso CS, Ergon Å, Rudi H, Larsen A, Humphreys MW, Rognli OA (2011) QTL analyses and comparative genetic mapping of frost tolerance, winter survival and drought tolerance in meadow fescue (Festuca pratensis Huds.). Theor Appl Genet 123: 369-382
    • (2011) Theor Appl Genet , vol.123 , pp. 369-382
    • Alm, V.1    Busso, C.S.2    Ergon, A.3    Rudi, H.4    Larsen, A.5    Humphreys, M.W.6    Rognli, O.A.7
  • 2
    • 0347930301 scopus 로고    scopus 로고
    • A linkage map of meadow fescue (Festuca pratensis Huds.) and comparative mapping with other Poaceae species
    • Alm V, Fang C, Busso CS, Devos KM, Vollan K, Grieg Z, Rognli OA (2003) A linkage map of meadow fescue (Festuca pratensis Huds.) and comparative mapping with other Poaceae species. Theor Appl Genet 108: 25-40
    • (2003) Theor Appl Genet , vol.108 , pp. 25-40
    • Alm, V.1    Fang, C.2    Busso, C.S.3    Devos, K.M.4    Vollan, K.5    Grieg, Z.6    Rognli, O.A.7
  • 4
    • 34548077860 scopus 로고    scopus 로고
    • Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa
    • Asp T, Frei UK, Didion T, Nielsen KK, Lübberstedt T (2007) Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. BMC Plant Biol 7: 36
    • (2007) BMC Plant Biol , vol.7 , pp. 36
    • Asp, T.1    Frei, U.K.2    Didion, T.3    Nielsen, K.K.4    Lübberstedt, T.5
  • 11
    • 14744267197 scopus 로고    scopus 로고
    • Updating the 'crop circle.'\
    • Devos KM (2005) Updating the 'crop circle.' Curr Opin Plant Biol 8: 155-162
    • (2005) Curr Opin Plant Biol , vol.8 , pp. 155-162
    • Devos, K.M.1
  • 12
    • 0034087970 scopus 로고    scopus 로고
    • Genome relationships: The grass model in current research
    • Devos KM, Gale MD (2000) Genome relationships: the grass model in current research. Plant Cell 12: 637-646
    • (2000) Plant Cell , vol.12 , pp. 637-646
    • Devos, K.M.1    Gale, M.D.2
  • 14
    • 0036043201 scopus 로고    scopus 로고
    • Comparative genomics in the grass family: Molecular characterization of grass genome structure and evolution
    • Feuillet C, Keller B (2002) Comparative genomics in the grass family: molecular characterization of grass genome structure and evolution. Ann Bot (Lond) 89: 3-10
    • (2002) Ann Bot (Lond) , vol.89 , pp. 3-10
    • Feuillet, C.1    Keller, B.2
  • 15
    • 0032561403 scopus 로고    scopus 로고
    • Plant comparative genetics after 10 years
    • Gale MD, Devos KM (1998) Plant comparative genetics after 10 years. Science 282: 656-659
    • (1998) Science , vol.282 , pp. 656-659
    • Gale, M.D.1    Devos, K.M.2
  • 16
    • 0036213939 scopus 로고    scopus 로고
    • Evolutionary dynamics of grass genomes
    • Gaut BS (2002) Evolutionary dynamics of grass genomes. New Phytol 154: 15-28
    • (2002) New Phytol , vol.154 , pp. 15-28
    • Gaut, B.S.1
  • 17
    • 0034800508 scopus 로고    scopus 로고
    • Phylogeny and subfamilial classification of the grasses (Poaceae)
    • Grass Phylogeny Working Group
    • Grass Phylogeny Working Group (2001) Phylogeny and subfamilial classification of the grasses (Poaceae). Ann Mo Bot Gard 88: 373-457
    • (2001) Ann Mo Bot Gard , vol.88 , pp. 373-457
  • 18
    • 58149267422 scopus 로고    scopus 로고
    • Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome
    • Hackauf B, Rudd S, van der Voort JR, Miedaner T, Wehling P (2009) Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome. Theor Appl Genet 118: 371-384
    • (2009) Theor Appl Genet , vol.118 , pp. 371-384
    • Hackauf, B.1    Rudd, S.2    Van der Voort, J.R.3    Miedaner, T.4    Wehling, P.5
  • 19
    • 79957821432 scopus 로고    scopus 로고
    • Alien introgression in the grasses Lolium perenne (perennial ryegrass) and Festuca pratensis (meadow fescue): The development of seven monosomic substitution lines and their molecular and cytological characterization
    • Harper J, Armstead I, Thomas A, James C, Gasior D, Bisaga M, Roberts L, King I, King J (2011) Alien introgression in the grasses Lolium perenne (perennial ryegrass) and Festuca pratensis (meadow fescue): the development of seven monosomic substitution lines and their molecular and cytological characterization. Ann Bot (Lond) 107: 1313-1321
    • (2011) Ann Bot (Lond) , vol.107 , pp. 1313-1321
    • Harper, J.1    Armstead, I.2    Thomas, A.3    James, C.4    Gasior, D.5    Bisaga, M.6    Roberts, L.7    King, I.8    King, J.9
  • 20
    • 33744489394 scopus 로고    scopus 로고
    • Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescent in situ hybridization
    • Hasterok R, Marasek A, Donnison IS, Armstead I, Thomas A, King IP, Wolny E, Idziak D, Draper J, Jenkins G (2006) Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescent in situ hybridization. Genetics 173: 349-362
    • (2006) Genetics , vol.173 , pp. 349-362
    • Hasterok, R.1    Marasek, A.2    Donnison, I.S.3    Armstead, I.4    Thomas, A.5    King, I.P.6    Wolny, E.7    Idziak, D.8    Draper, J.9    Jenkins, G.10
  • 21
    • 84856260308 scopus 로고    scopus 로고
    • Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content
    • Hernandez P, Martis M, Dorado G, Pfeifer M, Gálvez S, Schaaf S, Jouve N, Šimková H, Valárik M, Dole_zel J, et al (2012) Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J 69: 377-386
    • (2012) Plant J , vol.69 , pp. 377-386
    • Hernandez, P.1    Martis, M.2    Dorado, G.3    Pfeifer, M.4    Gálvez, S.5    Schaaf, S.6    Jouve, N.7    Šimková, H.8    Valárik, M.9    Dolezel, J.10
  • 22
    • 79961169114 scopus 로고    scopus 로고
    • Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon
    • Huo N, Garvin DF, You FM, McMahon S, Luo MC, Gu YQ, Lazo GR, Vogel JP (2011) Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon. Theor Appl Genet 123: 455-464
    • (2011) Theor Appl Genet , vol.123 , pp. 455-464
    • Huo, N.1    Garvin, D.F.2    You, F.M.3    McMahon, S.4    Luo, M.C.5    Gu, Y.Q.6    Lazo, G.R.7    Vogel, J.P.8
  • 23
    • 79551537130 scopus 로고    scopus 로고
    • Association genetics of complex traits in plants
    • Ingvarsson PK, Street NR (2011) Association genetics of complex traits in plants. New Phytol 189: 909-922
    • (2011) New Phytol , vol.189 , pp. 909-922
    • Ingvarsson, P.K.1    Street, N.R.2
  • 24
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • International Brachypodium Initiative
    • International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768
    • (2010) Nature , vol.463 , pp. 763-768
  • 25
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800
    • (2005) Nature , vol.436 , pp. 793-800
  • 27
    • 27944438804 scopus 로고    scopus 로고
    • The evolution of nuclear genome structure in seed plants
    • Kellogg EA, Bennetzen JL (2004) The evolution of nuclear genome structure in seed plants. Am J Bot 91: 1709-1725
    • (2004) Am J Bot , vol.91 , pp. 1709-1725
    • Kellogg, E.A.1    Bennetzen, J.L.2
  • 29
    • 35048842311 scopus 로고    scopus 로고
    • Comparative analyses between Lolium/ Festuca introgression lines and rice reveal the major fraction of functionally annotated gene models is located in recombination-poor/very recombination-poor regions of the genome
    • King J, Armstead IP, Donnison SI, Roberts LA, Harper JA, Skøt K, Elborough K, King IP (2007) Comparative analyses between Lolium/ Festuca introgression lines and rice reveal the major fraction of functionally annotated gene models is located in recombination-poor/very recombination-poor regions of the genome. Genetics 177: 597-606
    • (2007) Genetics , vol.177 , pp. 597-606
    • King, J.1    Armstead, I.P.2    Donnison, S.I.3    Roberts, L.A.4    Harper, J.A.5    Skøt, K.6    Elborough, K.7    King, I.P.8
  • 38
    • 23144455729 scopus 로고    scopus 로고
    • OrfPredictor: Predicting protein-coding regions in EST-derived sequences
    • Min XJ, Butler G, Storms R, Tsang A (2005) OrfPredictor: predicting protein-coding regions in EST-derived sequences. Nucleic Acids Res 33: W677-W680
    • (2005) Nucleic Acids Res , vol.33
    • Min, X.J.1    Butler, G.2    Storms, R.3    Tsang, A.4
  • 40
    • 0347297265 scopus 로고    scopus 로고
    • Linkage mapping in apomictic and sexual Kentucky bluegrass (Poa pratensis L.) genotypes using a two way pseudo-testcross strategy based on AFLP and SAMPL markers
    • Porceddu A, Albertini E, Barcaccia G, Falistocco E, Falcinelli M (2002) Linkage mapping in apomictic and sexual Kentucky bluegrass (Poa pratensis L.) genotypes using a two way pseudo-testcross strategy based on AFLP and SAMPL markers. Theor Appl Genet 104: 273-280
    • (2002) Theor Appl Genet , vol.104 , pp. 273-280
    • Porceddu, A.1    Albertini, E.2    Barcaccia, G.3    Falistocco, E.4    Falcinelli, M.5
  • 41
    • 77951183639 scopus 로고    scopus 로고
    • Association genetics in crop improvement
    • Rafalski JA (2010) Association genetics in crop improvement. Curr Opin Plant Biol 13: 174-180
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 174-180
    • Rafalski, J.A.1
  • 44
    • 37449006074 scopus 로고    scopus 로고
    • Comparative genomics of cereals
    • In R Varshney, R Tuberosa, eds, Springer-Verlag, Dordrecht, The Netherlands
    • Salse J, Feuillet C (2007) Comparative genomics of cereals. In R Varshney, R Tuberosa, eds, Genomics-Assisted Crop Improvement, Vol 1. Springer-Verlag, Dordrecht, The Netherlands, pp 177-205
    • (2007) Genomics-Assisted Crop Improvement , vol.1 , pp. 177-205
    • Salse, J.1    Feuillet, C.2
  • 45
    • 77952002714 scopus 로고    scopus 로고
    • Did gene family expansions during the Eocene-Oligocene boundary climate cooling play a role in Pooideae adaptation to cool climates?
    • Sandve SR, Fjellheim S (2010) Did gene family expansions during the Eocene-Oligocene boundary climate cooling play a role in Pooideae adaptation to cool climates? Mol Ecol 19: 2075-2088
    • (2010) Mol Ecol , vol.19 , pp. 2075-2088
    • Sandve, S.R.1    Fjellheim, S.2
  • 46
    • 52149101564 scopus 로고    scopus 로고
    • Tracking the evolution of a cold stress associated gene family in cold tolerant grasses
    • Sandve SR, Rudi H, Asp T, Rognli OA (2008) Tracking the evolution of a cold stress associated gene family in cold tolerant grasses. BMC Evol Biol 8: 245
    • (2008) BMC Evol Biol , vol.8 , pp. 245
    • Sandve, S.R.1    Rudi, H.2    Asp, T.3    Rognli, O.A.4
  • 48
    • 75949108635 scopus 로고    scopus 로고
    • Fine-scale comparative genetic and physical mapping supports mapbased cloning strategies for the self-incompatibility loci of perennial ryegrass (Lolium perenne L.)
    • Shinozuka H, Cogan NO, Smith KF, Spangenberg GC, Forster JW (2010) Fine-scale comparative genetic and physical mapping supports mapbased cloning strategies for the self-incompatibility loci of perennial ryegrass (Lolium perenne L.). Plant Mol Biol 72: 343-355
    • (2010) Plant Mol Biol , vol.72 , pp. 343-355
    • Shinozuka, H.1    Cogan, N.O.2    Smith, K.F.3    Spangenberg, G.C.4    Forster, J.W.5
  • 49
    • 18144429122 scopus 로고    scopus 로고
    • Chromosomal rearrangements differentiating the ryegrass genome from the Triticeae, oat, and rice genomes using common heterologous RFLP probes
    • Sim S, Chang T, Curley J, Warnke SE, Barker RE, Jung G (2005) Chromosomal rearrangements differentiating the ryegrass genome from the Triticeae, oat, and rice genomes using common heterologous RFLP probes. Theor Appl Genet 110: 1011-1019
    • (2005) Theor Appl Genet , vol.110 , pp. 1011-1019
    • Sim, S.1    Chang, T.2    Curley, J.3    Warnke, S.E.4    Barker, R.E.5    Jung, G.6
  • 58
    • 0000175619 scopus 로고
    • Rates of synonymous substitutions in plant nuclear genes
    • Wolfe KH, Scharp PM, Li W-H (1989) Rates of synonymous substitutions in plant nuclear genes. J Mol Evol 29: 208-211
    • (1989) J Mol Evol , vol.29 , pp. 208-211
    • Wolfe, K.H.1    Scharp, P.M.2    Li, W.-H.3
  • 59
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 60
    • 0035957736 scopus 로고    scopus 로고
    • Trends, rhythms, and aberrations in global climate 65 Ma to present
    • Zachos J, Pagani M, Sloan L, Thomas E, Billups K (2001) Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292: 686-693
    • (2001) Science , vol.292 , pp. 686-693
    • Zachos, J.1    Pagani, M.2    Sloan, L.3    Thomas, E.4    Billups, K.5
  • 61
    • 84862023110 scopus 로고    scopus 로고
    • Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
    • Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S, Xie M, Zeng P, Yue Z, Wang W, et al (2012) Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nat Biotechnol 30: 549-554
    • (2012) Nat Biotechnol , vol.30 , pp. 549-554
    • Zhang, G.1    Liu, X.2    Quan, Z.3    Cheng, S.4    Xu, X.5    Pan, S.6    Xie, M.7    Zeng, P.8    Yue, Z.9    Wang, W.10


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