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Volumn 16, Issue 5, 2013, Pages 652-658

Organelle transcriptomes: Products of a deconstructed genome

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MITOCHONDRIAL DNA; MITOCHONDRIAL RNA; MITOCHONDRIAL TRANSCRIPTION FACTOR A; RIBOSOME RNA; RNA; TRANSCRIPTOME; TRANSFER RNA;

EID: 84887624341     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2013.07.011     Document Type: Review
Times cited : (50)

References (61)
  • 1
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: a socket set for organelle gene expression
    • (Internet)
    • Schmitz-Linneweber C., Small I. Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci 2008, 13:663-670. (Internet).
    • (2008) Trends Plant Sci , vol.13 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 2
    • 84857029863 scopus 로고    scopus 로고
    • Nucleic acid recognition by tandem helical repeats
    • Rubinson E.H.E., Eichman B.F.B. Nucleic acid recognition by tandem helical repeats. Curr Opin Struct Biol 2012, 22:101-109.
    • (2012) Curr Opin Struct Biol , vol.22 , pp. 101-109
    • Rubinson, E.H.E.1    Eichman, B.F.B.2
  • 3
    • 0033525788 scopus 로고    scopus 로고
    • Mitochondrial evolution
    • Gray M.W., Burger G., Lang B.F. Mitochondrial evolution. Science 1999, 283:1476-1481.
    • (1999) Science , vol.283 , pp. 1476-1481
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 4
    • 34548627532 scopus 로고    scopus 로고
    • DNA replication and transcription in mammalian mitochondria
    • Falkenberg M., Larsson N., Gustafsson C. DNA replication and transcription in mammalian mitochondria. Annu Rev Biochem 2007, 76:679-699.
    • (2007) Annu Rev Biochem , vol.76 , pp. 679-699
    • Falkenberg, M.1    Larsson, N.2    Gustafsson, C.3
  • 5
    • 34548495323 scopus 로고    scopus 로고
    • The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures
    • Kaufman B., Durisic N., Mativetsky J., Costantino S., Hancock M., Grutter P., Shoubridge E. The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures. Mol Biol Cell 2007, 18:3225-3236.
    • (2007) Mol Biol Cell , vol.18 , pp. 3225-3236
    • Kaufman, B.1    Durisic, N.2    Mativetsky, J.3    Costantino, S.4    Hancock, M.5    Grutter, P.6    Shoubridge, E.7
  • 7
    • 63449105579 scopus 로고    scopus 로고
    • Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome
    • Metodiev M., Lesko N., Park C., Camara Y., Shi Y., Wibom R., Hultenby K., Gustafsson C., Larsson N. Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome. Cell Metab 2009, 9:386-397.
    • (2009) Cell Metab , vol.9 , pp. 386-397
    • Metodiev, M.1    Lesko, N.2    Park, C.3    Camara, Y.4    Shi, Y.5    Wibom, R.6    Hultenby, K.7    Gustafsson, C.8    Larsson, N.9
  • 8
    • 0024365289 scopus 로고
    • Termination of transcription in human mitochondria: identification and purification of a DNA binding protein factor that promotes termination
    • Kruse B.B., Narasimhan N.N., Attardi G.G. Termination of transcription in human mitochondria: identification and purification of a DNA binding protein factor that promotes termination. Cell 1989, 58:391-397.
    • (1989) Cell , vol.58 , pp. 391-397
    • Kruse, B.B.1    Narasimhan, N.N.2    Attardi, G.G.3
  • 9
    • 84875887074 scopus 로고    scopus 로고
    • MTERF1 binds mtDNA to prevent transcriptional interference at the light-strand promoter but is dispensable for rRNA gene transcription regulation
    • Terzioglu M., Ruzzenente B., Harmel J., Mourier A., Jemt E., López M.D., Kukat C., Stewart J.B., Wibom R., Meharg C., et al. MTERF1 binds mtDNA to prevent transcriptional interference at the light-strand promoter but is dispensable for rRNA gene transcription regulation. Cell Metab 2013, 17:618-626.
    • (2013) Cell Metab , vol.17 , pp. 618-626
    • Terzioglu, M.1    Ruzzenente, B.2    Harmel, J.3    Mourier, A.4    Jemt, E.5    López, M.D.6    Kukat, C.7    Stewart, J.B.8    Wibom, R.9    Meharg, C.10
  • 11
    • 81055126308 scopus 로고    scopus 로고
    • Mitochondrial ribosomal protein L12 selectively associates with human mitochondrial RNA polymerase to activate transcription
    • Surovtseva Y., Shutt T., Cotney J., Cimen H., Chen S., Koc E., Shadel G. Mitochondrial ribosomal protein L12 selectively associates with human mitochondrial RNA polymerase to activate transcription. Proc Natl Acad Sci U S A 2011, 108:17921-17926.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 17921-17926
    • Surovtseva, Y.1    Shutt, T.2    Cotney, J.3    Cimen, H.4    Chen, S.5    Koc, E.6    Shadel, G.7
  • 12
    • 0019444843 scopus 로고
    • TRNA punctuation model of RNA processing in human mitochondria
    • Ojala D., Montoya J., Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature 1981, 290:470-474.
    • (1981) Nature , vol.290 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 13
    • 54549088876 scopus 로고    scopus 로고
    • RNase P: without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme
    • Holzmann J., Frank P., Löffler E., Bennett K.L., Gerner C., Rossmanith W. RNase P: without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme. Cell 2008, 135:462-474.
    • (2008) Cell , vol.135 , pp. 462-474
    • Holzmann, J.1    Frank, P.2    Löffler, E.3    Bennett, K.L.4    Gerner, C.5    Rossmanith, W.6
  • 15
    • 84868309519 scopus 로고    scopus 로고
    • Human ELAC2 gene encodes the tRNAseZ responsible for mitochondrial tRNA 3' processing which acts on precursors already cleaved by RNAseP
    • Brzezniak L., Stepień P., Bijata M. Human ELAC2 gene encodes the tRNAseZ responsible for mitochondrial tRNA 3' processing which acts on precursors already cleaved by RNAseP. RNA Biol 2011, 8:1-11.
    • (2011) RNA Biol , vol.8 , pp. 1-11
    • Brzezniak, L.1    Stepień, P.2    Bijata, M.3
  • 18
    • 84871194226 scopus 로고    scopus 로고
    • A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase - extensive moonlighting in mitochondrial tRNA biogenesis
    • Vilardo E., Nachbagauer C., Buzet A., Taschner A., Holzmann J., Rossmanith W. A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase - extensive moonlighting in mitochondrial tRNA biogenesis. Nucleic Acids Res 2012, 40:11583-11593.
    • (2012) Nucleic Acids Res , vol.40 , pp. 11583-11593
    • Vilardo, E.1    Nachbagauer, C.2    Buzet, A.3    Taschner, A.4    Holzmann, J.5    Rossmanith, W.6
  • 19
    • 79955716664 scopus 로고    scopus 로고
    • Localization of human RNase Z isoforms: dual nuclear/mitochondrial targeting of the ELAC2 gene product by alternative translation initiation
    • Rossmanith W. Localization of human RNase Z isoforms: dual nuclear/mitochondrial targeting of the ELAC2 gene product by alternative translation initiation. PLoS ONE 2011, 6:e19152.
    • (2011) PLoS ONE , vol.6
    • Rossmanith, W.1
  • 20
    • 81755161589 scopus 로고    scopus 로고
    • Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins
    • Rackham O., Shearwood A-M.J., Mercer T.R., Davies S.M.K., Mattick J.S., Filipovska A. Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins. RNA 2011, 17:2085-2093.
    • (2011) RNA , vol.17 , pp. 2085-2093
    • Rackham, O.1    Shearwood, A.-M.J.2    Mercer, T.R.3    Davies, S.M.K.4    Mattick, J.S.5    Filipovska, A.6
  • 21
    • 84875309966 scopus 로고    scopus 로고
    • The mitochondrial RNA-binding protein GRSF1 localizes to RNA granules and is required for posttranscriptional mitochondrial gene expression
    • Antonicka H., Sasarman F., Nishimura T., Paupe V., Shoubridge E.A. The mitochondrial RNA-binding protein GRSF1 localizes to RNA granules and is required for posttranscriptional mitochondrial gene expression. Cell Metab 2013, 17:386-398.
    • (2013) Cell Metab , vol.17 , pp. 386-398
    • Antonicka, H.1    Sasarman, F.2    Nishimura, T.3    Paupe, V.4    Shoubridge, E.A.5
  • 23
    • 0028568179 scopus 로고
    • Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA
    • Alifano P., Rivellini F., Piscitelli C., Arraiano C.M., Bruni C.B., Carlomagno M.S. Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA. Genes Dev 1994, 8:3021-3031.
    • (1994) Genes Dev , vol.8 , pp. 3021-3031
    • Alifano, P.1    Rivellini, F.2    Piscitelli, C.3    Arraiano, C.M.4    Bruni, C.B.5    Carlomagno, M.S.6
  • 25
    • 80755169463 scopus 로고    scopus 로고
    • Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases
    • Suzuki T., Nagao A., Suzuki T. Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases. Annu Rev Genet 2011, 45:299-329.
    • (2011) Annu Rev Genet , vol.45 , pp. 299-329
    • Suzuki, T.1    Nagao, A.2    Suzuki, T.3
  • 26
    • 0018577407 scopus 로고
    • A different genetic code in human mitochondria
    • Barrell B., Bankier A., Drouin J. A different genetic code in human mitochondria. Nature 1979, 282:189-194.
    • (1979) Nature , vol.282 , pp. 189-194
    • Barrell, B.1    Bankier, A.2    Drouin, J.3
  • 28
    • 84870392446 scopus 로고    scopus 로고
    • Structural aspects of mitochondrial translational apparatus
    • Agrawal R.K., Sharma M.R. Structural aspects of mitochondrial translational apparatus. Curr Opin Struct Biol 2012, 10.1016/j.sbi.2012.08.003.
    • (2012) Curr Opin Struct Biol
    • Agrawal, R.K.1    Sharma, M.R.2
  • 29
    • 77953799862 scopus 로고    scopus 로고
    • Maintenance and expression of the S. cerevisiae mitochondrial genome - from genetics to evolution and systems biology
    • Lipinski K.A., Kaniak-Golik A., Golik P. Maintenance and expression of the S. cerevisiae mitochondrial genome - from genetics to evolution and systems biology. Biochim Biophys Acta 2010, 1797:1086-1098.
    • (2010) Biochim Biophys Acta , vol.1797 , pp. 1086-1098
    • Lipinski, K.A.1    Kaniak-Golik, A.2    Golik, P.3
  • 32
    • 84867571779 scopus 로고    scopus 로고
    • The human mitochondrial transcriptome and the RNA-binding proteins that regulate its expression
    • Rackham O., Mercer T.R., Filipovska A. The human mitochondrial transcriptome and the RNA-binding proteins that regulate its expression. WIREs RNA 2012, 3:675-695.
    • (2012) WIREs RNA , vol.3 , pp. 675-695
    • Rackham, O.1    Mercer, T.R.2    Filipovska, A.3
  • 35
    • 79953711431 scopus 로고    scopus 로고
    • Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold
    • Barkan A. Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold. Plant Physiol 2011, 155:1520-1532.
    • (2011) Plant Physiol , vol.155 , pp. 1520-1532
    • Barkan, A.1
  • 37
    • 84865204727 scopus 로고    scopus 로고
    • Potential role of tRNAs in wheat and Lolium mitochondrial rps7 transcript processing
    • Byers E., Bonen L. Potential role of tRNAs in wheat and Lolium mitochondrial rps7 transcript processing. Genome 2012, 55:615-621.
    • (2012) Genome , vol.55 , pp. 615-621
    • Byers, E.1    Bonen, L.2
  • 38
    • 84863586271 scopus 로고    scopus 로고
    • Plastid sequences contribute to some plant mitochondrial genes
    • Wang D., Rousseau-Gueutin M., Timmis J.N. Plastid sequences contribute to some plant mitochondrial genes. Mol Biol Evol 2012, 29:1707-1711.
    • (2012) Mol Biol Evol , vol.29 , pp. 1707-1711
    • Wang, D.1    Rousseau-Gueutin, M.2    Timmis, J.N.3
  • 39
    • 79957886185 scopus 로고    scopus 로고
    • The evolution of RNA editing and pentatricopeptide repeat genes
    • Fujii J., Small I. The evolution of RNA editing and pentatricopeptide repeat genes. New Phytol 2011, 191:37-47.
    • (2011) New Phytol , vol.191 , pp. 37-47
    • Fujii, J.1    Small, I.2
  • 40
    • 84864295706 scopus 로고    scopus 로고
    • Mitochondrial poly(A) polymerase and polyadenylation
    • Chang J.H., Tong L. Mitochondrial poly(A) polymerase and polyadenylation. Biochim Biophys Acta 2012, 1819:992-997.
    • (2012) Biochim Biophys Acta , vol.1819 , pp. 992-997
    • Chang, J.H.1    Tong, L.2
  • 41
    • 80955177475 scopus 로고    scopus 로고
    • Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation
    • Germain A., Herlich S., Larom S., Kim S.H., Schuster G., Stern D.B. Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation. Plant J 2011, 67:381-394.
    • (2011) Plant J , vol.67 , pp. 381-394
    • Germain, A.1    Herlich, S.2    Larom, S.3    Kim, S.H.4    Schuster, G.5    Stern, D.B.6
  • 42
    • 84869092510 scopus 로고    scopus 로고
    • Unexpected diversity of chloroplast noncoding RNAs as revealed by deep sequencing of the Arabidopsis transcriptome
    • Hotto A.M., Schmitz R.J., Fei Z., Ecker J.R., Stern D.B. Unexpected diversity of chloroplast noncoding RNAs as revealed by deep sequencing of the Arabidopsis transcriptome. G3 (Bethesda) 2011, 1:559-570.
    • (2011) G3 (Bethesda) , vol.1 , pp. 559-570
    • Hotto, A.M.1    Schmitz, R.J.2    Fei, Z.3    Ecker, J.R.4    Stern, D.B.5
  • 43
    • 84860147226 scopus 로고    scopus 로고
    • Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?
    • Ruwe H., Schmitz-Linneweber C. Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?. Nucleic Acids Res 2012, 40:3106-3116.
    • (2012) Nucleic Acids Res , vol.40 , pp. 3106-3116
    • Ruwe, H.1    Schmitz-Linneweber, C.2
  • 44
    • 84860153569 scopus 로고    scopus 로고
    • Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts
    • Zhelyazkova P., Hammani K., Rojas M., Voelker R., Vargas-Suarez M., Borner T., Barkan A. Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts. Nucleic Acids Res 2012, 40:3092-3105.
    • (2012) Nucleic Acids Res , vol.40 , pp. 3092-3105
    • Zhelyazkova, P.1    Hammani, K.2    Rojas, M.3    Voelker, R.4    Vargas-Suarez, M.5    Borner, T.6    Barkan, A.7
  • 45
    • 78651068887 scopus 로고    scopus 로고
    • Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
    • Prikryl J., Rojas M., Schuster G., Barkan A. Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein. Proc Natl Acad Sci U S A 2011, 108:415-420.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 415-420
    • Prikryl, J.1    Rojas, M.2    Schuster, G.3    Barkan, A.4
  • 47
    • 84857692673 scopus 로고    scopus 로고
    • Transfer RNA-derived fragments: origins, processing, and functions
    • Sobala A., Hutvagner G. Transfer RNA-derived fragments: origins, processing, and functions. WIREs RNA 2011, 2:853-862.
    • (2011) WIREs RNA , vol.2 , pp. 853-862
    • Sobala, A.1    Hutvagner, G.2
  • 48
    • 84870295523 scopus 로고    scopus 로고
    • Plastid non-coding RNAs: emerging candidates for gene regulation
    • Hotto A.M., Germain A., Stern D.B. Plastid non-coding RNAs: emerging candidates for gene regulation. Trends Plant Sci 2012, 17:737-744.
    • (2012) Trends Plant Sci , vol.17 , pp. 737-744
    • Hotto, A.M.1    Germain, A.2    Stern, D.B.3
  • 49
    • 84857757047 scopus 로고    scopus 로고
    • The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase
    • Zhelyazkova P., Sharma C.M., Forstner K.U., Liere K., Vogel J., Borner T. The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. Plant Cell 2012, 24:123-136.
    • (2012) Plant Cell , vol.24 , pp. 123-136
    • Zhelyazkova, P.1    Sharma, C.M.2    Forstner, K.U.3    Liere, K.4    Vogel, J.5    Borner, T.6
  • 52
    • 81755162780 scopus 로고    scopus 로고
    • Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA
    • Sharwood R.E., Halpert M., Luro S., Schuster G., Stern D.B. Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA. RNA 2011, 17:2165-2176.
    • (2011) RNA , vol.17 , pp. 2165-2176
    • Sharwood, R.E.1    Halpert, M.2    Luro, S.3    Schuster, G.4    Stern, D.B.5
  • 57
    • 84859475178 scopus 로고    scopus 로고
    • Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants
    • Takenaka M., Zehrmann A., Verbitskiy D., Kugelmann M., Hartel B., Brennicke A. Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Proc Natl Acad Sci U S A 2012, 109:5104-5109.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 5104-5109
    • Takenaka, M.1    Zehrmann, A.2    Verbitskiy, D.3    Kugelmann, M.4    Hartel, B.5    Brennicke, A.6
  • 58
    • 84879678855 scopus 로고    scopus 로고
    • Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing
    • Bentolila S., Oh J., Hanson M.R. Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing. PLoS Genet 2013, 9:e1003584.
    • (2013) PLoS Genet , vol.9
    • Bentolila, S.1    Oh, J.2    Hanson, M.R.3
  • 60
    • 84866145891 scopus 로고    scopus 로고
    • A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins
    • Barkan A., Rojas M., Fujii S., Yap A., Chong Y.S., Bond C.S., Small I. A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins. PLoS Genet 2012, 8:e1002910.
    • (2012) PLoS Genet , vol.8
    • Barkan, A.1    Rojas, M.2    Fujii, S.3    Yap, A.4    Chong, Y.S.5    Bond, C.S.6    Small, I.7
  • 61
    • 84874588115 scopus 로고    scopus 로고
    • Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants
    • Yagi Y., Hayashi S., Kobayashi K., Hirayama T., Nakamura T. Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants. PLoS ONE 2013, 8:e57286.
    • (2013) PLoS ONE , vol.8
    • Yagi, Y.1    Hayashi, S.2    Kobayashi, K.3    Hirayama, T.4    Nakamura, T.5


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