-
1
-
-
0014433598
-
Cellular and humoral immunity to different types of human neoplasms
-
Hellström, I., Hellström, K. E., Pierce, G. E. & Yang, J. P. Cellular and humoral immunity to different types of human neoplasms. Nature 220, 1352-1354 (1968).
-
(1968)
Nature
, vol.220
, pp. 1352-1354
-
-
Hellström, I.1
Hellström, K.E.2
Pierce, G.E.3
Yang, J.P.4
-
2
-
-
84961219372
-
The future of cancer treatment: Immunomodulation, CARs and combination immunotherapy
-
Khalil, D. N., Smith, E. L., Brentjens, R. J. & Wolchok, J. D. The future of cancer treatment: immunomodulation, CARs and combination immunotherapy. Nat. Rev. Clin. Oncol. 13, 273-290 (2016).
-
(2016)
Nat. Rev. Clin. Oncol.
, vol.13
, pp. 273-290
-
-
Khalil, D.N.1
Smith, E.L.2
Brentjens, R.J.3
Wolchok, J.D.4
-
3
-
-
84918828514
-
Genetic basis for clinical response to CTLA-4 blockade in melanoma
-
Snyder, A. et al. Genetic basis for clinical response to CTLA-4 blockade in melanoma. N. Engl. J. Med. 371, 2189-2199 (2014).
-
(2014)
N. Engl. J. Med.
, vol.371
, pp. 2189-2199
-
-
Snyder, A.1
-
4
-
-
84914124753
-
Acquired and intrinsic resistance in cancer immunotherapy
-
Kelderman, S., Schumacher, T. N. & Haanen, J. B. Acquired and intrinsic resistance in cancer immunotherapy. Mol. Oncol. 8, 1132-1139 (2014).
-
(2014)
Mol. Oncol.
, vol.8
, pp. 1132-1139
-
-
Kelderman, S.1
Schumacher, T.N.2
Haanen, J.B.3
-
5
-
-
84928761118
-
Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer
-
Rizvi, N. A. et al. Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science 348, 124-128 (2015).
-
(2015)
Science
, vol.348
, pp. 124-128
-
-
Rizvi, N.A.1
-
6
-
-
84994330192
-
Tumor-specific T cell dysfunction is a dynamic antigendriven differentiation program initiated early during tumorigenesis
-
Schietinger, A. et al. Tumor-specific T cell dysfunction is a dynamic antigendriven differentiation program initiated early during tumorigenesis. Immunity 45, 389-401 (2016).
-
(2016)
Immunity
, vol.45
, pp. 389-401
-
-
Schietinger, A.1
-
7
-
-
84859157183
-
Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity
-
Zhang, J. A., Mortazavi, A., Williams, B. A., Wold, B. J. & Rothenberg, E. V. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell 149, 467-482 (2012).
-
(2012)
Cell
, vol.149
, pp. 467-482
-
-
Zhang, J.A.1
Mortazavi, A.2
Williams, B.A.3
Wold, B.J.4
Rothenberg, E.V.5
-
8
-
-
84884256121
-
Global DNA methylation remodeling accompanies CD8 T cell effector function
-
Scharer, C. D., Barwick, B. G., Youngblood, B. A., Ahmed, R. & Boss, J. M. Global DNA methylation remodeling accompanies CD8 T cell effector function. J. Immunol. 191, 3419-3429 (2013).
-
(2013)
J. Immunol.
, vol.191
, pp. 3419-3429
-
-
Scharer, C.D.1
Barwick, B.G.2
Youngblood, B.A.3
Ahmed, R.4
Boss, J.M.5
-
9
-
-
84912096136
-
+ T cell differentiation
-
+ T cell differentiation. Immunity 41, 853-865 (2014).
-
(2014)
Immunity
, vol.41
, pp. 853-865
-
-
Russ, B.E.1
-
10
-
-
84964922317
-
Developmental acquisition of regulomes underlies innate lymphoid cell functionality
-
Shih, H. Y. et al. Developmental acquisition of regulomes underlies innate lymphoid cell functionality. Cell 165, 1120-1133 (2016).
-
(2016)
Cell
, vol.165
, pp. 1120-1133
-
-
Shih, H.Y.1
-
11
-
-
84888877924
-
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
-
Buenrostro, J. D., Giresi, P. G., Zaba, L. C., Chang, H. Y. & Greenleaf, W. J. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat. Methods 10, 1213-1218 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 1213-1218
-
-
Buenrostro, J.D.1
Giresi, P.G.2
Zaba, L.C.3
Chang, H.Y.4
Greenleaf, W.J.5
-
12
-
-
0038446044
-
+ T cell effector function in SV40 T antigen transgenic mice
-
+ T cell effector function in SV40 T antigen transgenic mice. J. Immunol. 171, 697-707 (2003).
-
(2003)
J. Immunol.
, vol.171
, pp. 697-707
-
-
Staveley-O'Carroll, K.1
-
13
-
-
4644297195
-
Listeria-based cancer vaccines that segregate immunogenicity from toxicity
-
Brockstedt, D. G. et al. Listeria-based cancer vaccines that segregate immunogenicity from toxicity. Proc. Natl Acad. Sci. USA 101, 13832-13837 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 13832-13837
-
-
Brockstedt, D.G.1
-
14
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
15
-
-
50949127683
-
Histone acetylation facilitates rapid and robust memory CD8 T cell response through differential expression of effector molecules (eomesodermin and its targets: Perforin and granzyme B)
-
Araki, Y., Fann, M., Wersto, R. & Weng, N. P. Histone acetylation facilitates rapid and robust memory CD8 T cell response through differential expression of effector molecules (eomesodermin and its targets: perforin and granzyme B). J. Immunol. 180, 8102-8108 (2008).
-
(2008)
J. Immunol.
, vol.180
, pp. 8102-8108
-
-
Araki, Y.1
Fann, M.2
Wersto, R.3
Weng, N.P.4
-
17
-
-
84875448616
-
+ T cell response to infection and memory T cell formation
-
+ T cell response to infection and memory T cell formation. Nat. Immunol. 14, 404-412 (2013).
-
(2013)
Nat. Immunol.
, vol.14
, pp. 404-412
-
-
Best, J.A.1
-
18
-
-
84990861953
-
Aerobic glycolysis promotes T helper 1 cell differentiation through an epigenetic mechanism
-
Peng, M. et al. Aerobic glycolysis promotes T helper 1 cell differentiation through an epigenetic mechanism. Science 354, 481-484 (2016).
-
(2016)
Science
, vol.354
, pp. 481-484
-
-
Peng, M.1
-
19
-
-
84978765839
-
Ki-67 acts as a biological surfactant to disperse mitotic chromosomes
-
Cuylen, S. et al. Ki-67 acts as a biological surfactant to disperse mitotic chromosomes. Nature 535, 308-312 (2016).
-
(2016)
Nature
, vol.535
, pp. 308-312
-
-
Cuylen, S.1
-
21
-
-
84994335422
-
The epigenetic landscape of T cell exhaustion
-
Sen, D. R. et al. The epigenetic landscape of T cell exhaustion. Science 354, 1165-1169 (2016).
-
(2016)
Science
, vol.354
, pp. 1165-1169
-
-
Sen, D.R.1
-
22
-
-
84994364943
-
Epigenetic stability of exhausted T cells limits durability of reinvigoration by PD-1 blockade
-
Pauken, K. E. et al. Epigenetic stability of exhausted T cells limits durability of reinvigoration by PD-1 blockade. Science 354, 1160-1165 (2016).
-
(2016)
Science
, vol.354
, pp. 1160-1165
-
-
Pauken, K.E.1
-
23
-
-
85006747281
-
+ T cells responding to viral infection
-
+ T cells responding to viral infection. Immunity 45, 1327-1340 (2016).
-
(2016)
Immunity
, vol.45
, pp. 1327-1340
-
-
Scott-Browne, J.P.1
-
24
-
-
20644466433
-
NFAT proteins: Key regulators of T-cell development and function
-
Macian, F. NFAT proteins: key regulators of T-cell development and function. Nat. Rev. Immunol. 5, 472-484 (2005).
-
(2005)
Nat. Rev. Immunol.
, vol.5
, pp. 472-484
-
-
Macian, F.1
-
25
-
-
84923026945
-
+ T cells
-
+ T cells. Immunity 42, 265-278 (2015).
-
(2015)
Immunity
, vol.42
, pp. 265-278
-
-
Martinez, G.J.1
-
26
-
-
33644816267
-
+ T cells for use in adoptive immunotherapy of established tumors
-
+ T cells for use in adoptive immunotherapy of established tumors. Nat. Med. 12, 335-341 (2006).
-
(2006)
Nat. Med.
, vol.12
, pp. 335-341
-
-
Teague, R.M.1
-
27
-
-
73949086540
-
MART-1-specific melanoma tumor-infiltrating lymphocytes maintaining CD28 expression have improved survival and expansion capability following antigenic restimulation in vitro
-
Li, Y. et al. MART-1-specific melanoma tumor-infiltrating lymphocytes maintaining CD28 expression have improved survival and expansion capability following antigenic restimulation in vitro. J. Immunol. 184, 452-465 (2010).
-
(2010)
J. Immunol.
, vol.184
, pp. 452-465
-
-
Li, Y.1
-
28
-
-
0025871394
-
Nuclear association of a T-cell transcription factor blocked by FK-506 and cyclosporin A
-
Flanagan, W. M., Corthésy, B., Bram, R. J. & Crabtree, G. R. Nuclear association of a T-cell transcription factor blocked by FK-506 and cyclosporin A. Nature 352, 803-807 (1991).
-
(1991)
Nature
, vol.352
, pp. 803-807
-
-
Flanagan, W.M.1
Corthésy, B.2
Bram, R.J.3
Crabtree, G.R.4
-
29
-
-
0027491776
-
The T-cell transcription factor NFATp is a substrate for calcineurin and interacts with fos and jun
-
Jain, J. et al. The T-cell transcription factor NFATp is a substrate for calcineurin and interacts with Fos and Jun. Nature 365, 352-355 (1993).
-
(1993)
Nature
, vol.365
, pp. 352-355
-
-
Jain, J.1
-
30
-
-
67650465237
-
+ memory stem cells
-
+ memory stem cells. Nat. Med. 15, 808-813 (2009).
-
(2009)
Nat. Med.
, vol.15
, pp. 808-813
-
-
Gattinoni, L.1
-
31
-
-
84857034495
-
Rescued tolerant CD8 T cells are preprogrammed to reestablish the tolerant state
-
Schietinger, A., Delrow, J. J., Basom, R. S., Blattman, J. N. & Greenberg, P. D. Rescued tolerant CD8 T cells are preprogrammed to reestablish the tolerant state. Science 335, 723-727 (2012).
-
(2012)
Science
, vol.335
, pp. 723-727
-
-
Schietinger, A.1
Delrow, J.J.2
Basom, R.S.3
Blattman, J.N.4
Greenberg, P.D.5
-
32
-
-
84983753066
-
+ T cell hypofunction in a transplantable murine cancer model
-
+ T cell hypofunction in a transplantable murine cancer model. J. Immunol. 197, 1477-1488 (2016).
-
(2016)
J. Immunol.
, vol.197
, pp. 1477-1488
-
-
Waugh, K.A.1
-
33
-
-
63749092190
-
Tumor agonist peptides break tolerance and elicit effective CTL responses in an inducible mouse model of hepatocellular carcinoma
-
Stahl, S. et al. Tumor agonist peptides break tolerance and elicit effective CTL responses in an inducible mouse model of hepatocellular carcinoma. Immunol. Lett. 123, 31-37 (2009).
-
(2009)
Immunol. Lett.
, vol.123
, pp. 31-37
-
-
Stahl, S.1
-
34
-
-
70349673721
-
+ T cells by polyvalent listeria monocytogenes-based vaccines
-
+ T cells by polyvalent Listeria monocytogenes-based vaccines. J. Immunother. 32, 856-869 (2009).
-
(2009)
J. Immunother.
, vol.32
, pp. 856-869
-
-
Sinnathamby, G.1
-
35
-
-
84876381248
-
Relapse or eradication of cancer is predicted by peptide-major histocompatibility complex affinity
-
Engels, B. et al. Relapse or eradication of cancer is predicted by peptide-major histocompatibility complex affinity. Cancer Cell 23, 516-526 (2013).
-
(2013)
Cancer Cell
, vol.23
, pp. 516-526
-
-
Engels, B.1
-
36
-
-
84859210032
-
Fast gapped-read alignment with bowtie2
-
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie2. Nat. Methods 9, 357-359 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
37
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
Adey, A. et al. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol. 11, R119 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R119
-
-
Adey, A.1
-
38
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang, Y. et al. Model-based analysis of ChIP-seq (MACS). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
-
39
-
-
84870265010
-
The potential for bias in principal causal effect estimation when treatment received depends on a key covariate
-
Zigler, C. M. & Belin, T. R. The potential for bias in principal causal effect estimation when treatment received depends on a key covariate. Ann. Appl. Stat. 5, 1876-1892 (2011).
-
(2011)
Ann. Appl. Stat.
, vol.5
, pp. 1876-1892
-
-
Zigler, C.M.1
Belin, T.R.2
-
40
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
41
-
-
84883368195
-
Software for computing and annotating genomic ranges
-
Lawrence, M. et al. Software for computing and annotating genomic ranges. PLOS Comput. Biol. 9, e1003118 (2013).
-
(2013)
PLOS Comput. Biol.
, vol.9
, pp. e1003118
-
-
Lawrence, M.1
-
42
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R. & Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
43
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
-
44
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey, T. L. et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-W208 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
-
45
-
-
84907413210
-
Determination and inference of eukaryotic transcription factor sequence specificity
-
Weirauch, M. T. et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell 158, 1431-1443 (2014).
-
(2014)
Cell
, vol.158
, pp. 1431-1443
-
-
Weirauch, M.T.1
-
46
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
Grant, C. E., Bailey, T. L. & Noble, W. S. FIMO: scanning for occurrences of a given motif. Bioinformatics 27, 1017-1018 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
47
-
-
33644874573
-
The UCSC genome browser database: Update 2006
-
Hinrichs, A. S. et al. The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 34, D590-D598 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D590-D598
-
-
Hinrichs, A.S.1
-
48
-
-
84924536474
-
Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution
-
Denas, O. et al. Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution. BMC Genomics 16, 87 (2015).
-
(2015)
BMC Genomics
, vol.16
, pp. 87
-
-
Denas, O.1
-
49
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
-
50
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean, C. Y. et al. GREAT improves functional interpretation of cis-regulatory regions. Nat. Biotechnol. 28, 495-501 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
|