-
1
-
-
84961148172
-
Active site specificity of the matrix metalloproteinase family: proteomic identification of 4300 cleavage sites by nine MMPs explored with structural and synthetic peptide cleavage analyses
-
Eckhard, U., Huesgen, P.F., Schilling, O., Bellac, C.L., Butler, G.S., Cox, J.H., et al. Active site specificity of the matrix metalloproteinase family: proteomic identification of 4300 cleavage sites by nine MMPs explored with structural and synthetic peptide cleavage analyses. Matrix Biol.: J. Int. Soc. Matrix Biol., 2015, 10.1016/j.matbio.2015.09.003.
-
(2015)
Matrix Biol.: J. Int. Soc. Matrix Biol.
-
-
Eckhard, U.1
Huesgen, P.F.2
Schilling, O.3
Bellac, C.L.4
Butler, G.S.5
Cox, J.H.6
-
2
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
Craig, R., Beavis, R.C., TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20 (2004), 1466–1467, 10.1093/bioinformatics/bth092.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
3
-
-
33748748477
-
TIMP independence of matrix metalloproteinase (MMP)-2 activation by membrane type 2 (MT2)-MMP is determined by contributions of both the MT2-MMP catalytic and hemopexin C domains
-
Morrison, C.J., Overall, C.M., TIMP independence of matrix metalloproteinase (MMP)-2 activation by membrane type 2 (MT2)-MMP is determined by contributions of both the MT2-MMP catalytic and hemopexin C domains. J. Biol. Chem. 281 (2006), 26528–26539, 10.1074/jbc.M603331200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 26528-26539
-
-
Morrison, C.J.1
Overall, C.M.2
-
4
-
-
2442561604
-
The canonical methionine 392 of matrix metalloproteinase 2 (gelatinase A) is not required for catalytic efficiency or structural integrity: probing the role of the methionine-turn in the metzincin metalloprotease superfamily
-
Butler, G.S., Tam, E.M., Overall, C.M., The canonical methionine 392 of matrix metalloproteinase 2 (gelatinase A) is not required for catalytic efficiency or structural integrity: probing the role of the methionine-turn in the metzincin metalloprotease superfamily. J. Biol. Chem. 279 (2004), 15615–15620, 10.1074/jbc.M312727200.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 15615-15620
-
-
Butler, G.S.1
Tam, E.M.2
Overall, C.M.3
-
5
-
-
12544256661
-
Pivotal molecular determinants of peptidic and collagen triple helicase activities reside in the S3′ subsite of matrix metalloproteinase 8 (MMP-8): the role of hydrogen bonding potential of ASN188 and TYR189 and the connecting cis bond
-
Pelman, G.R., Morrison, C.J., Overall, C.M., Pivotal molecular determinants of peptidic and collagen triple helicase activities reside in the S3′ subsite of matrix metalloproteinase 8 (MMP-8): the role of hydrogen bonding potential of ASN188 and TYR189 and the connecting cis bond. J. Biol. Chem. 280 (2005), 2370–2377, 10.1074/jbc.M409603200.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 2370-2377
-
-
Pelman, G.R.1
Morrison, C.J.2
Overall, C.M.3
-
6
-
-
80053190824
-
Microarray and proteomic analysis of breast cancer cell and osteoblast co-cultures: role of osteoblast matrix metalloproteinase (MMP)-13 in bone metastasis
-
Morrison, C., Mancini, S., Cipollone, J., Kappelhoff, R., Roskelley, C., Overall, C., Microarray and proteomic analysis of breast cancer cell and osteoblast co-cultures: role of osteoblast matrix metalloproteinase (MMP)-13 in bone metastasis. J. Biol. Chem. 286 (2011), 34271–34285, 10.1074/jbc.M111.222513.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 34271-34285
-
-
Morrison, C.1
Mancini, S.2
Cipollone, J.3
Kappelhoff, R.4
Roskelley, C.5
Overall, C.6
-
7
-
-
0034714202
-
TIMP-2 is required for efficient activation of proMMP-2 in vivo
-
Wang, Z., Juttermann, R., Soloway, P.D., TIMP-2 is required for efficient activation of proMMP-2 in vivo. J. Biol. Chem. 275 (2000), 26411–26415, 10.1074/jbc.M001270200.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 26411-26415
-
-
Wang, Z.1
Juttermann, R.2
Soloway, P.D.3
-
8
-
-
44949142150
-
Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
-
Schilling, O., Overall, C.M., Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites. Nat. Biotechnol. 26 (2008), 685–694, 10.1038/nbt1408.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 685-694
-
-
Schilling, O.1
Overall, C.M.2
-
9
-
-
78651069641
-
Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry
-
Schilling, O., Huesgen, P.F., Barré O., Keller, U. Auf dem, Overall, C.M., Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry. Nat. Protoc. 6 (2011), 111–120, 10.1038/nprot.2010.178.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 111-120
-
-
Schilling, O.1
Huesgen, P.F.2
Barré, O.3
Keller, U.A.D.4
Overall, C.M.5
-
10
-
-
84948987628
-
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics
-
Deutsch, E.W., Mendoza, L., Shteynberg, D., Slagel, J., Sun, Z., Moritz, R.L., Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. Proteom. Clin. Appl., 2015, 10.1002/prca.201400164.
-
(2015)
Proteom. Clin. Appl.
-
-
Deutsch, E.W.1
Mendoza, L.2
Shteynberg, D.3
Slagel, J.4
Sun, Z.5
Moritz, R.L.6
-
11
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A., Nesvizhskii, A.I., Kolker, E., Aebersold, R., Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74 (2002), 5383–5392.
-
(2002)
Anal. Chem.
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
12
-
-
80053621170
-
Factor Xa subsite mapping by proteome-derived peptide libraries improved using WebPICS, a resource for proteomic identification of cleavage sites
-
Schilling, O., auf dem Keller, U., Overall, C.M., Factor Xa subsite mapping by proteome-derived peptide libraries improved using WebPICS, a resource for proteomic identification of cleavage sites. Biol. Chem. 392 (2011), 1031–1037, 10.1515/BC.2011.158.
-
(2011)
Biol. Chem.
, vol.392
, pp. 1031-1037
-
-
Schilling, O.1
auf dem Keller, U.2
Overall, C.M.3
-
13
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
AID-ELPS3551>3.0.CO;2-2
-
Perkins, D.N., Pappin, D.J., Creasy, D.M., Cottrell, J.S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20 (1999), 3551–3567, 10.1002/(SICI)1522-2683(19991201)20:18<3551 AID-ELPS3551>3.0.CO;2-2.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
14
-
-
84923247212
-
MS-GF+ makes progress towards a universal database search tool for proteomics
-
Kim, S., Pevzner, P.A., MS-GF+ makes progress towards a universal database search tool for proteomics. Nat. Commun., 5, 2014, 5277, 10.1038/ncomms6277.
-
(2014)
Nat. Commun.
, vol.5
, pp. 5277
-
-
Kim, S.1
Pevzner, P.A.2
-
15
-
-
84872371907
-
Comet: an open-source MS/MS sequence database search tool
-
Eng, J.K., Jahan, T.A., Hoopmann, M.R., Comet: an open-source MS/MS sequence database search tool. Proteomics. 13 (2013), 22–24, 10.1002/pmic.201200439.
-
(2013)
Proteomics.
, vol.13
, pp. 22-24
-
-
Eng, J.K.1
Jahan, T.A.2
Hoopmann, M.R.3
-
16
-
-
84905397897
-
MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra
-
Dorfer, V., Pichler, P., Stranzl, T., Stadlmann, J., Taus, T., Winkler, S., et al. MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra. J. Proteome Res. 13 (2014), 3679–3684, 10.1021/pr500202e.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 3679-3684
-
-
Dorfer, V.1
Pichler, P.2
Stranzl, T.3
Stadlmann, J.4
Taus, T.5
Winkler, S.6
-
17
-
-
80053387432
-
iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates
-
Shteynberg, D., Deutsch, E.W., Lam, H., Eng, J.K., Sun, Z., Tasman, N., et al. iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates. Mol. Cell. Proteom., 10, 2011, 10.1074/mcp.M111.007690.
-
(2011)
Mol. Cell. Proteom.
, vol.10
-
-
Shteynberg, D.1
Deutsch, E.W.2
Lam, H.3
Eng, J.K.4
Sun, Z.5
Tasman, N.6
-
18
-
-
84923897273
-
PeptideShaker enables reanalysis of MS-derived proteomics data sets
-
Vaudel, M., Burkhart, J.M., Zahedi, R.P., Oveland, E., Berven, F.S., Sickmann, A., et al. PeptideShaker enables reanalysis of MS-derived proteomics data sets. Nat. Biotechnol. 33 (2015), 22–24, 10.1038/nbt.3109.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 22-24
-
-
Vaudel, M.1
Burkhart, J.M.2
Zahedi, R.P.3
Oveland, E.4
Berven, F.S.5
Sickmann, A.6
-
19
-
-
84876935490
-
Cleavage entropy as quantitative measure of protease specificity
-
Fuchs, J.E., von Grafenstein, S., Huber, R.G., Margreiter, M.A., Spitzer, G.M., Wallnoefer, H.G., et al. Cleavage entropy as quantitative measure of protease specificity. Plos Comput. Biol., 9, 2013, e1003007, 10.1371/journal.pcbi.1003007.
-
(2013)
Plos Comput. Biol.
, vol.9
, pp. e1003007
-
-
Fuchs, J.E.1
von Grafenstein, S.2
Huber, R.G.3
Margreiter, M.A.4
Spitzer, G.M.5
Wallnoefer, H.G.6
-
20
-
-
0030729481
-
Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold
-
Perona, J.J., Craik, C.S., Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold. J. Biol. Chem. 272 (1997), 29987–29990.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 29987-29990
-
-
Perona, J.J.1
Craik, C.S.2
-
21
-
-
84907687810
-
Basis for substrate recognition and distinction by matrix metalloproteinases
-
Ratnikov, B.I., Cieplak, P., Gramatikoff, K., Pierce, J., Eroshkin, A., Igarashi, Y., et al. Basis for substrate recognition and distinction by matrix metalloproteinases. Proc. Natl. Acad. Sci. USA 111 (2014), E4148–E4155, 10.1073/pnas.1406134111.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E4148-E4155
-
-
Ratnikov, B.I.1
Cieplak, P.2
Gramatikoff, K.3
Pierce, J.4
Eroshkin, A.5
Igarashi, Y.6
-
22
-
-
84888274187
-
Substrate-driven mapping of the degradome by comparison of sequence logos
-
Fuchs, J.E., von Grafenstein, S., Huber, R.G., Kramer, C., Liedl, K.R., Substrate-driven mapping of the degradome by comparison of sequence logos. Plos Comput. Biol., 9, 2013, e1003353, 10.1371/journal.pcbi.1003353.
-
(2013)
Plos Comput. Biol.
, vol.9
, pp. e1003353
-
-
Fuchs, J.E.1
von Grafenstein, S.2
Huber, R.G.3
Kramer, C.4
Liedl, K.R.5
-
23
-
-
84946069451
-
UniProt: a hub for protein information
-
UniProt Consortium, UniProt: a hub for protein information. Nucleic Acids Res. 43 (2015), D204–D212, 10.1093/nar/gku989.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D204-D212
-
-
UniProt Consortium1
-
24
-
-
84891782659
-
Pfam: the protein families database
-
Finn, R.D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R.Y., Eddy, S.R., et al. Pfam: the protein families database. Nucleic Acids Res. 42 (2014), D222–D230, 10.1093/nar/gkt1223.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
-
25
-
-
84891804220
-
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors
-
Rawlings, N.D., Waller, M., Barrett, A.J., Bateman, A., MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res. 42 (2014), D503–D509, 10.1093/nar/gkt953.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D503-D509
-
-
Rawlings, N.D.1
Waller, M.2
Barrett, A.J.3
Bateman, A.4
-
26
-
-
80052290625
-
TopFIND, a knowledgebase linking protein termini with function
-
Lange, P.F., Overall, C.M., TopFIND, a knowledgebase linking protein termini with function. Nat. Methods 8 (2011), 703–704, 10.1038/nmeth.1669.
-
(2011)
Nat. Methods
, vol.8
, pp. 703-704
-
-
Lange, P.F.1
Overall, C.M.2
-
27
-
-
84862227658
-
TopFIND 2.0–linking protein termini with proteolytic processing and modifications altering protein function
-
Lange, P.F., Huesgen, P.F., Overall, C.M., TopFIND 2.0–linking protein termini with proteolytic processing and modifications altering protein function. Nucleic Acids Res. 40 (2012), D351–D361, 10.1093/nar/gkr1025.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D351-D361
-
-
Lange, P.F.1
Huesgen, P.F.2
Overall, C.M.3
-
28
-
-
84941086837
-
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events
-
Fortelny, N., Yang, S., Pavlidis, P., Lange, P.F., Overall, C.M., Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events. Nucleic Acids Res. 43 (2015), D290–D297, 10.1093/nar/gku1012.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D290-D297
-
-
Fortelny, N.1
Yang, S.2
Pavlidis, P.3
Lange, P.F.4
Overall, C.M.5
-
29
-
-
70350732744
-
Improved visualization of protein consensus sequences by iceLogo
-
Colaert, N., Helsens, K., Martens, L., Vandekerckhove, J., Gevaert, K., Improved visualization of protein consensus sequences by iceLogo. Nat. Methods 6 (2009), 786–787, 10.1038/nmeth1109-786.
-
(2009)
Nat. Methods
, vol.6
, pp. 786-787
-
-
Colaert, N.1
Helsens, K.2
Martens, L.3
Vandekerckhove, J.4
Gevaert, K.5
-
30
-
-
0026505650
-
A novel coumarin-labelled peptide for sensitive continuous assays of the matrix metalloproteinases
-
Knight, C.G., Willenbrock, F., Murphy, G., A novel coumarin-labelled peptide for sensitive continuous assays of the matrix metalloproteinases. FEBS Lett. 296 (1992), 263–266.
-
(1992)
FEBS Lett.
, vol.296
, pp. 263-266
-
-
Knight, C.G.1
Willenbrock, F.2
Murphy, G.3
-
31
-
-
84897038767
-
Proteomic protease specificity profiling of clostridial collagenases reveals their intrinsic nature as dedicated degraders of collagen
-
Eckhard, U., Huesgen, P.F., Brandstetter, H., Overall, C.M., Proteomic protease specificity profiling of clostridial collagenases reveals their intrinsic nature as dedicated degraders of collagen. J. Proteom. 100 (2014), 102–114, 10.1016/j.jprot.2013.10.004.
-
(2014)
J. Proteom.
, vol.100
, pp. 102-114
-
-
Eckhard, U.1
Huesgen, P.F.2
Brandstetter, H.3
Overall, C.M.4
-
32
-
-
84890928051
-
Family-wide characterization of matrix metalloproteinases from Arabidopsis thaliana reveals their distinct proteolytic activity and cleavage site specificity
-
Marino, G., Huesgen, P.F., Eckhard, U., Overall, C.M., Schröder, W.P., Funk, C., Family-wide characterization of matrix metalloproteinases from Arabidopsis thaliana reveals their distinct proteolytic activity and cleavage site specificity. Biochem. J. 457 (2014), 335–346, 10.1042/BJ20130196.
-
(2014)
Biochem. J.
, vol.457
, pp. 335-346
-
-
Marino, G.1
Huesgen, P.F.2
Eckhard, U.3
Overall, C.M.4
Schröder, W.P.5
Funk, C.6
-
33
-
-
84907484027
-
Cleavage specificity analysis of six type II transmembrane serine proteases (TTSPs) using PICS with proteome-derived peptide libraries
-
Barré O., Dufour, A., Eckhard, U., Kappelhoff, R., Béliveau, F., Leduc, R., et al. Cleavage specificity analysis of six type II transmembrane serine proteases (TTSPs) using PICS with proteome-derived peptide libraries. Plos One, 9, 2014, e105984, 10.1371/journal.pone.0105984.
-
(2014)
Plos One
, vol.9
, pp. e105984
-
-
Barré, O.1
Dufour, A.2
Eckhard, U.3
Kappelhoff, R.4
Béliveau, F.5
Leduc, R.6
-
34
-
-
84925027070
-
LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification
-
Huesgen, P.F., Lange, P.F., Rogers, L.D., Solis, N., Eckhard, U., Kleifeld, O., et al. LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification. Nat. Methods 12 (2015), 55–58, 10.1038/nmeth.3177.
-
(2015)
Nat. Methods
, vol.12
, pp. 55-58
-
-
Huesgen, P.F.1
Lange, P.F.2
Rogers, L.D.3
Solis, N.4
Eckhard, U.5
Kleifeld, O.6
-
35
-
-
84908529601
-
Snake venom serine proteinases specificity mapping by proteomic identification of cleavage sites
-
Zelanis, A., Huesgen, P.F., Oliveira, A.K., Tashima, A.K., Serrano, S.M.T., Overall, C.M., Snake venom serine proteinases specificity mapping by proteomic identification of cleavage sites. J. Proteom. 113 (2015), 260–267, 10.1016/j.jprot.2014.10.002.
-
(2015)
J. Proteom.
, vol.113
, pp. 260-267
-
-
Zelanis, A.1
Huesgen, P.F.2
Oliveira, A.K.3
Tashima, A.K.4
Serrano, S.M.T.5
Overall, C.M.6
-
36
-
-
77749320923
-
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
-
Kleifeld, O., Doucet, A., auf dem Keller, U., Prudova, A., Schilling, O., Kainthan, R.K., et al. Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products. Nat. Biotechnol. 28 (2010), 281–288, 10.1038/nbt.1611.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 281-288
-
-
Kleifeld, O.1
Doucet, A.2
auf dem Keller, U.3
Prudova, A.4
Schilling, O.5
Kainthan, R.K.6
-
37
-
-
80053404377
-
Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
-
Kleifeld, O., Doucet, A., Prudova, A., Keller, U. auf dem, Gioia, M., Kizhakkedathu, J.N., et al. Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates. Nat. Protoc. 6 (2011), 1578–1611, 10.1038/nprot.2011.382.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1578-1611
-
-
Kleifeld, O.1
Doucet, A.2
Prudova, A.3
Keller, U.A.D.4
Gioia, M.5
Kizhakkedathu, J.N.6
-
38
-
-
84877887593
-
Identifying natural substrates for dipeptidyl peptidases 8 and 9 using terminal amine isotopic labeling of substrates (TAILS) reveals in vivo roles in cellular homeostasis and energy metabolism
-
Wilson, C.H., Indarto, D., Doucet, A., Pogson, L.D., Pitman, M.R., McNicholas, K., et al. Identifying natural substrates for dipeptidyl peptidases 8 and 9 using terminal amine isotopic labeling of substrates (TAILS) reveals in vivo roles in cellular homeostasis and energy metabolism. J. Biol. Chem. 288 (2013), 13936–13949, 10.1074/jbc.M112.445841.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 13936-13949
-
-
Wilson, C.H.1
Indarto, D.2
Doucet, A.3
Pogson, L.D.4
Pitman, M.R.5
McNicholas, K.6
-
39
-
-
77951134556
-
Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics
-
Prudova, A., Keller, U. auf dem, Butler, G.S., Overall, C.M., Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics. Mol. Cell. Proteom. 9 (2010), 894–911, 10.1074/mcp.M000050-MCP201.
-
(2010)
Mol. Cell. Proteom.
, vol.9
, pp. 894-911
-
-
Prudova, A.1
Keller, U.A.D.2
Butler, G.S.3
Overall, C.M.4
-
40
-
-
84859738660
-
Biochemical characterization and N-terminomics analysis of leukolysin, the membrane-type 6 matrix metalloprotease (MMP25): chemokine and vimentin cleavages enhance cell migration and macrophage phagocytic activities
-
Starr, A.E., Bellac, C.L., Dufour, A., Goebeler, V., Overall, C.M., Biochemical characterization and N-terminomics analysis of leukolysin, the membrane-type 6 matrix metalloprotease (MMP25): chemokine and vimentin cleavages enhance cell migration and macrophage phagocytic activities. J. Biol. Chem. 287 (2012), 13382–13395, 10.1074/jbc.M111.314179.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 13382-13395
-
-
Starr, A.E.1
Bellac, C.L.2
Dufour, A.3
Goebeler, V.4
Overall, C.M.5
-
41
-
-
80052734691
-
Proteomic analyses reveal an acidic prime side specificity for the astacin metalloprotease family reflected by physiological substrates
-
Becker-Pauly, C., Barré O., Schilling, O., Keller, U. Auf dem, Ohler, A., Broder, C., et al. Proteomic analyses reveal an acidic prime side specificity for the astacin metalloprotease family reflected by physiological substrates. Mol. Cell. Proteom., 10, 2011, 10.1074/mcp.M111.009233.
-
(2011)
Mol. Cell. Proteom.
, vol.10
-
-
Becker-Pauly, C.1
Barré, O.2
Schilling, O.3
Keller, U.A.D.4
Ohler, A.5
Broder, C.6
-
42
-
-
84872593231
-
Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation
-
Keller, U. auf dem, Prudova, A., Eckhard, U., Fingleton, B., Overall, C.M., Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation. Sci. Signal., 6, 2013, rs2., 10.1126/scisignal.2003512.
-
(2013)
Sci. Signal.
, vol.6
, pp. rs2
-
-
Keller, U.A.D.1
Prudova, A.2
Eckhard, U.3
Fingleton, B.4
Overall, C.M.5
-
43
-
-
84896969045
-
Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome
-
Lange, P.F., Huesgen, P.F., Nguyen, K., Overall, C.M., Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome. J. Proteome Res. 13 (2014), 2028–2044, 10.1021/pr401191w.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 2028-2044
-
-
Lange, P.F.1
Huesgen, P.F.2
Nguyen, K.3
Overall, C.M.4
-
44
-
-
84939826366
-
Protein Termini and Their Modifications Revealed by Positional Proteomics
-
Marino, G., Eckhard, U., Overall, C.M., Protein Termini and Their Modifications Revealed by Positional Proteomics. ACS Chem. Biol. 10 (2015), 1754–1764, 10.1021/acschembio.5b00189.
-
(2015)
ACS Chem. Biol.
, vol.10
, pp. 1754-1764
-
-
Marino, G.1
Eckhard, U.2
Overall, C.M.3
-
45
-
-
84919472207
-
TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage
-
Prudova, A., Serrano, K., Eckhard, U., Fortelny, N., Devine, D.V., Overall, C.M., TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage. Blood 124 (2014), e49–e60, 10.1182/blood-2014-04-569640.
-
(2014)
Blood
, vol.124
, pp. e49-e60
-
-
Prudova, A.1
Serrano, K.2
Eckhard, U.3
Fortelny, N.4
Devine, D.V.5
Overall, C.M.6
-
46
-
-
84941051862
-
The human dental pulp proteome and N-terminome: levering the unexplored potential of semitryptic peptides enriched by TAILS to identify missing proteins in the human proteome project in underexplored tissues
-
Eckhard, U., Marino, G., Abbey, S.R., Tharmarajah, G., Matthew, I., Overall, C.M., The human dental pulp proteome and N-terminome: levering the unexplored potential of semitryptic peptides enriched by TAILS to identify missing proteins in the human proteome project in underexplored tissues. J. Proteome Res. 14 (2015), 3568–3582, 10.1021/acs.jproteome.5b00579.
-
(2015)
J. Proteome Res.
, vol.14
, pp. 3568-3582
-
-
Eckhard, U.1
Marino, G.2
Abbey, S.R.3
Tharmarajah, G.4
Matthew, I.5
Overall, C.M.6
-
47
-
-
84945134705
-
TAILS N-terminomic and proteomic datasets of healthy human dental pulp
-
Eckhard, U., Marino, G., Abbey, S.R., Matthew, I., Overall, C.M., TAILS N-terminomic and proteomic datasets of healthy human dental pulp. Data Brief. 5 (2015), 542–548, 10.1016/j.dib.2015.10.003.
-
(2015)
Data Brief.
, vol.5
, pp. 542-548
-
-
Eckhard, U.1
Marino, G.2
Abbey, S.R.3
Matthew, I.4
Overall, C.M.5
-
48
-
-
0021355340
-
A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids
-
Wessel, D., Flügge, U.I., A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem. 138 (1984), 141–143.
-
(1984)
Anal. Biochem.
, vol.138
, pp. 141-143
-
-
Wessel, D.1
Flügge, U.I.2
-
49
-
-
84867345063
-
A cross-platform toolkit for mass spectrometry and proteomics
-
Chambers, M.C., Maclean, B., Burke, R., Amodei, D., Ruderman, D.L., Neumann, S., et al. A cross-platform toolkit for mass spectrometry and proteomics. Nat. Biotechnol. 30 (2012), 918–920, 10.1038/nbt.2377.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 918-920
-
-
Chambers, M.C.1
Maclean, B.2
Burke, R.3
Amodei, D.4
Ruderman, D.L.5
Neumann, S.6
-
50
-
-
0037569631
-
Pre-steady-state kinetics of Bacillus licheniformis 1,3-1,4-beta-glucanase: evidence for a regulatory binding site
-
Abel, M., Iversen, K., Planas, A., Christensen, U., Pre-steady-state kinetics of Bacillus licheniformis 1,3-1,4-beta-glucanase: evidence for a regulatory binding site. Biochem. J. 371 (2003), 997–1003, 10.1042/BJ20021504.
-
(2003)
Biochem. J.
, vol.371
, pp. 997-1003
-
-
Abel, M.1
Iversen, K.2
Planas, A.3
Christensen, U.4
-
51
-
-
84874762979
-
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
-
Vizcaíno, J.A., Côté R.G., Csordas, A., Dianes, J.A., Fabregat, A., Foster, J.M., et al. The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res. 41 (2013), D1063–1069, 10.1093/nar/gks1262.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D1063-1069
-
-
Vizcaíno, J.A.1
Côté, R.G.2
Csordas, A.3
Dianes, J.A.4
Fabregat, A.5
Foster, J.M.6
|