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Volumn 6, Issue 1, 2011, Pages 111-120

Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry

Author keywords

[No Author keywords available]

Indexed keywords

PROTEINASE; PROTEOME; TRYPSIN;

EID: 78651069641     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2010.178     Document Type: Article
Times cited : (96)

References (15)
  • 1
    • 0014405092 scopus 로고
    • On the active site of proteases 3 mapping the active site of papain specific peptide inhibitors of papain
    • Schechter, I. & Berger, A. On the active site of proteases. 3. Mapping the active site of papain; specific peptide inhibitors of papain. Biochem. Biophys. Res. Commun. 32, 898-902 (1968).
    • (1968) Biochem. Biophys. Res. Commun. , vol.32 , pp. 898-902
    • Schechter, I.1    Berger, A.2
  • 2
    • 33846821908 scopus 로고    scopus 로고
    • Proteomic discovery of protease substrates
    • Schilling, O. & Overall, C.M. Proteomic discovery of protease substrates. Curr. Opin. Chem. Biol. 11, 36-45 (2007).
    • (2007) Curr. Opin. Chem. Biol. , vol.11 , pp. 36-45
    • Schilling, O.1    Overall, C.M.2
  • 3
    • 44949142150 scopus 로고    scopus 로고
    • Proteome-derived database-searchable peptide libraries for identifying protease cleavage sites
    • Schilling, O. & Overall, C.M. Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites. Nat. Biotechnol. 26, 685-694 (2008).
    • (2008) Nat. Biotechnol. , vol.26 , pp. 685-694
    • Schilling, O.1    Overall, C.M.2
  • 4
    • 78149357484 scopus 로고    scopus 로고
    • Proteomic techniques and activity-based probes for the system-wide study of proteolysis
    • Auf dem Keller, U. & Schilling, O. Proteomic techniques and activity-based probes for the system-wide study of proteolysis. Biochimie 92, 1705-1714 (2010).
    • (2010) Biochimie , vol.92 , pp. 1705-1714
    • Auf Dem Keller, U.1    Schilling, O.2
  • 5
    • 0027316004 scopus 로고
    • Substrate phage: Selection of protease substrates by monovalent phage display
    • Matthews, D.J. & Wells, J.A. Substrate phage: selection of protease substrates by monovalent phage display. Science 260, 1113-1117 (1993).
    • (1993) Science , vol.260 , pp. 1113-1117
    • Matthews, D.J.1    Wells, J.A.2
  • 6
    • 33646726556 scopus 로고    scopus 로고
    • Protease specificity determination by using cellular libraries of peptide substrates CLiPS
    • USA
    • Boulware, K.T. & Daugherty, P.S. Protease specificity determination by using cellular libraries of peptide substrates (CLiPS). Proc. Natl. Acad. Sci. USA 103, 7583-7588 (2006).
    • (2006) Proc. Natl. Acad. Sci. , vol.103 , pp. 7583-7588
    • Boulware, K.T.1    Daugherty, P.S.2
  • 7
    • 0034946412 scopus 로고    scopus 로고
    • Determination of protease cleavage site motifs using mixture-based oriented peptide libraries
    • Turk, B.E., Huang, L.L., Piro, E.T. & Cantley, L.C. Determination of protease cleavage site motifs using mixture-based oriented peptide libraries. Nat. Biotechnol. 19, 661-667 (2001).
    • (2001) Nat. Biotechnol. , vol.19 , pp. 661-667
    • Turk, B.E.1    Huang, L.L.2    Piro, E.T.3    Cantley, L.C.4
  • 8
    • 77749320923 scopus 로고    scopus 로고
    • Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
    • Kleifeld, O. et al. Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products. Nat. Biotechnol. 28, 281-288 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 281-288
    • Kleifeld, O.1
  • 9
    • 78349248588 scopus 로고    scopus 로고
    • A lead discovery strategy driven by a comprehensive analysis of proteases in the peptide substrate space
    • Sukuru, S.C.K. et al. A lead discovery strategy driven by a comprehensive analysis of proteases in the peptide substrate space. Protein Sci. 19, 2096-2109 (2010).
    • (2010) Protein Sci. , vol.19 , pp. 2096-2109
    • Sukuru, S.C.K.1
  • 10
    • 78651100958 scopus 로고    scopus 로고
    • Protease subsite profiling with proteome-derived peptide libraries PICS
    • 10.1038 nprot.2008.88
    • Schilling, O. & Overall, C.M. Protease subsite profiling with proteome-derived peptide libraries (PICS). Nat. Protoc. doi: 10.1038/nprot.2008.88 (2008).
    • (2008) Nat. Protoc.
    • Schilling, O.1    Overall, C.M.2
  • 11
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N., Pappin, D.J., Creasy, D.M. & Cottrell, J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567 (1999).
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 12
    • 3142702204 scopus 로고    scopus 로고
    • Tandem: Matching proteins with tandem mass spectra
    • Craig, R. & Beavis, R.C. TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20, 1466-1467 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 13
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS MS and database search
    • Keller, A., Nesvizhskii, A.I., Kolker, E. & Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74, 5383-5392 (2002).
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 14
    • 77449122863 scopus 로고    scopus 로고
    • Trans-proteomic pipeline: A pipeline for proteomic analysis
    • Pedrioli, P.G.A. Trans-proteomic pipeline: a pipeline for proteomic analysis. Methods Mol. Biol. 604, 213-238 (2010).
    • (2010) Methods Mol. Biol. , vol.604 , pp. 213-238
    • Pedrioli, P.G.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.