-
2
-
-
0344719444
-
Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus
-
Adams KL, Palmer JD. 2003. Evolution of mitochondrial gene content: gene loss and transfer to the nucleus. Mol Phylogenet Evol. 29:380-395.
-
(2003)
Mol Phylogenet Evol
, vol.29
, pp. 380-395
-
-
Adams, K.L.1
Palmer, J.D.2
-
3
-
-
0037471674
-
The function of genomes in bioenergetic organelles
-
Allen JF. 2003a. The function of genomes in bioenergetic organelles. Philos Trans R Soc Lond B Biol Sci. 358:19-37.
-
(2003)
Philos Trans R Soc Lond B Biol Sci
, vol.358
, pp. 19-37
-
-
Allen, J.F.1
-
4
-
-
0037295044
-
Why chloroplasts and mitochondria contain genomes
-
Allen JF. 2003b. Why chloroplasts and mitochondria contain genomes. Comp Funct Genomics 4:31-36.
-
(2003)
Comp Funct Genomics
, vol.4
, pp. 31-36
-
-
Allen, J.F.1
-
5
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res. 25:3389-3402.
-
(1997)
Nucl Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
-
6
-
-
0032127258
-
Reductive evolution of resident genomes
-
Andersson SG, Kurland CG. 1998. Reductive evolution of resident genomes. Trends Microbiol. 6:263-268.
-
(1998)
Trends Microbiol
, vol.6
, pp. 263-268
-
-
Andersson, S.G.1
Kurland, C.G.2
-
7
-
-
66749108480
-
A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor
-
Atteia A, et al. 2009. A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor. Mol Biol Evol. 26:1533-1548.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1533-1548
-
-
Atteia, A.1
-
8
-
-
0021085862
-
Regional variation and paleontology of two coral beds in the Middle Devonian Hamilton Group of Western New York
-
Baird GC, Brett CE. 1983. Regional variation and paleontology of two coral beds in the Middle Devonian Hamilton Group of Western New York. J Paleontol 57:417-446.
-
(1983)
J Paleontol
, vol.57
, pp. 417-446
-
-
Baird, G.C.1
Brett, C.E.2
-
9
-
-
79251517043
-
Relative quantification of the M and F mitochondrial DNA types in the blue mussel Mytilus edulis by real-time PCR
-
Batista FM, Lallias D, Taris N, Guerdes-Pinto H, Beaumont AR. 2010. Relative quantification of the M and F mitochondrial DNA types in the blue mussel Mytilus edulis by real-time PCR. J Molluscan Stud 71:24-29.
-
(2010)
J Molluscan Stud
, vol.71
, pp. 24-29
-
-
Batista, F.M.1
Lallias, D.2
Taris, N.3
Guerdes-Pinto, H.4
Beaumont, A.R.5
-
10
-
-
84883453792
-
A comprehensive analysis of metazoan mitochondrial genomes and animal phylogeny
-
Bernt M, et al. 2013. A comprehensive analysis of metazoan mitochondrial genomes and animal phylogeny. Mol Phylogenet Evol. 69:352-364.
-
(2013)
Mol Phylogenet Evol
, vol.69
, pp. 352-364
-
-
Bernt, M.1
-
11
-
-
85014628453
-
The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii
-
Bettinazzi S, Plazzi F, Passamonti M. 2016. The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii. PLoS One 11:e0153631.
-
(2016)
PLoS One
, vol.11
-
-
Bettinazzi, S.1
Plazzi, F.2
Passamonti, M.3
-
12
-
-
84895771342
-
Investigating the Bivalve Tree of Life - An exemplar-based approach combining molecular and novel morphological characters
-
Bieler R, et al. 2014. Investigating the Bivalve Tree of Life - an exemplar-based approach combining molecular and novel morphological characters. Invertebr Syst 28:32. 115.
-
(2014)
Invertebr Syst
, vol.28
-
-
Bieler, R.1
-
13
-
-
3242790356
-
Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis
-
Boore JL, Medina M, Rosenberg LA. 2004. Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis. Mol Biol Evol. 21:1492-1503.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1492-1503
-
-
Boore, J.L.1
Medina, M.2
Rosenberg, L.A.3
-
14
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore JL. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27:1767-1780.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
15
-
-
84974379511
-
On the late precambrian- early cambrian Hartshill formation of warwickshire
-
Brasier MD, Hewitt RA. 1978. On the late precambrian- early cambrian Hartshill formation of warwickshire. Geol Mag 115:21-36.
-
(1978)
Geol Mag
, vol.115
, pp. 21-36
-
-
Brasier, M.D.1
Hewitt, R.A.2
-
16
-
-
71549154068
-
Comparative mitochondrial genomics of freshwater mussels (Bivalvia: Unionoida) with doubly uniparental inheritance of mtDNA: Gender-specific open reading frames and putative origins of replication
-
Breton S, et al. 2009. Comparative mitochondrial genomics of freshwater mussels (Bivalvia: Unionoida) with doubly uniparental inheritance of mtDNA: gender-specific open reading frames and putative origins of replication. Genetics 183:1575-1589.
-
(2009)
Genetics
, vol.183
, pp. 1575-1589
-
-
Breton, S.1
-
17
-
-
33644761929
-
Comparative analysis of gender-associated complete mitochondrial genomes in marine mussels (Mytilus spp.)
-
Breton S, Burger G, Stewart DT, Blier PU. 2006. Comparative analysis of gender-associated complete mitochondrial genomes in marine mussels (Mytilus spp.). Genetics 172:1107-1119.
-
(2006)
Genetics
, vol.172
, pp. 1107-1119
-
-
Breton, S.1
Burger, G.2
Stewart, D.T.3
Blier, P.U.4
-
18
-
-
34547870541
-
The unusual system of doubly uniparental inheritance of mtDNA: Isn't one enough?
-
Breton S, Doucet-Beaupré H, Stewart DT, Hoeh WR, Blier PU. 2007. The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough? Trends Genet. 23:465-474.
-
(2007)
Trends Genet
, vol.23
, pp. 465-474
-
-
Breton, S.1
Doucet-Beaupré, H.2
Stewart, D.T.3
Hoeh, W.R.4
Blier, P.U.5
-
19
-
-
84915807668
-
A resourceful genome: Updating the functional repertoire and evolutionary role of animal mitochondrial DNAs
-
Breton S, et al. 2014. A resourceful genome: updating the functional repertoire and evolutionary role of animal mitochondrial DNAs. Trends Genet. 30:555-564.
-
(2014)
Trends Genet
, vol.30
, pp. 555-564
-
-
Breton, S.1
-
20
-
-
77953286665
-
Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): Identification of the "missing" ATPase 8 gene
-
Breton S, Stewart DT, Hoeh WR. 2010. Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): identification of the "missing" ATPase 8 gene. Mar Genomics 3:11-18.
-
(2010)
Mar Genomics
, vol.3
, pp. 11-18
-
-
Breton, S.1
Stewart, D.T.2
Hoeh, W.R.3
-
21
-
-
0002087008
-
Comparative taphonomy and paleoecology of middle Devonian dark gray and black shale facies from western New York
-
Brett CE, Dick VB, Baird GC. 1991. Comparative taphonomy and paleoecology of middle Devonian dark gray and black shale facies from western New York. State Mus Bull. 469:5-36.
-
(1991)
State Mus Bull
, vol.469
, pp. 5-36
-
-
Brett, C.E.1
Dick, V.B.2
Baird, G.C.3
-
23
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
24
-
-
31444445723
-
Presence of a unique male-specific extension of C-terminus to the cytochrome c oxidase subunit II protein coded by the male-transmitted mitochondrial genome of Venustaconcha ellipsiformis (Bivalvia: Unionoidea)
-
Chakrabarti R, et al. 2006. Presence of a unique male-specific extension of C-terminus to the cytochrome c oxidase subunit II protein coded by the male-transmitted mitochondrial genome of Venustaconcha ellipsiformis (Bivalvia: Unionoidea). FEBS Lett. 580:862-866.
-
(2006)
FEBS Lett
, vol.580
, pp. 862-866
-
-
Chakrabarti, R.1
-
25
-
-
84901410479
-
Mitochondria as signaling organelles
-
Chandel NS. 2014. Mitochondria as signaling organelles. BMC Biol. 12:34.
-
(2014)
BMC Biol
, vol.12
, pp. 34
-
-
Chandel, N.S.1
-
26
-
-
41149089793
-
SeqinR 1.0-2: A contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis
-
Bastolla U, Porto M, Roman HE, Vendruscolo M, editors. New York: Springer Verlag
-
Charif D, Lobry JR. 2007. SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. In: Bastolla U, Porto M, Roman HE, Vendruscolo M, editors. Structural approaches to sequence evolution: Molecules, networks, populations. New York: Springer Verlag. p. 207-232.
-
(2007)
Structural Approaches to Sequence Evolution: Molecules, Networks, Populations
, pp. 207-232
-
-
Charif, D.1
Lobry, J.R.2
-
27
-
-
0028932673
-
Limitations to in vivo import of hydrophobic proteins into yeast mitochondria. The case of a cytoplasmically synthesized apocytochrome b
-
Claros MG, et al. 1995. Limitations to in vivo import of hydrophobic proteins into yeast mitochondria. The case of a cytoplasmically synthesized apocytochrome b. Eur J Biochem. 228:762-771.
-
(1995)
Eur J Biochem
, vol.228
, pp. 762-771
-
-
Claros, M.G.1
-
29
-
-
0032766927
-
Diversification of bivalves in the Ordovician
-
Cope JCW, Babin C. 1999. Diversification of bivalves in the Ordovician. Geobios 32:175-185.
-
(1999)
Geobios
, vol.32
, pp. 175-185
-
-
Cope, J.C.W.1
Babin, C.2
-
30
-
-
84889673780
-
The Lower Palaeozoic palaeobiogeography of Bivalvia
-
Cope JCW, Kříž J. 2013. The Lower Palaeozoic palaeobiogeography of Bivalvia. Geol Soc Lond Mem 38:221-241.
-
(2013)
Geol Soc Lond Mem
, vol.38
, pp. 221-241
-
-
Cope, J.C.W.1
Kříž, J.2
-
31
-
-
0002848160
-
The early evolution of the Bivalvia
-
Taylor JD, editor. Oxford: Oxford University Press
-
Cope JCW. 1996. The early evolution of the Bivalvia. In: Taylor JD, editor. Origin and Evolutionary Radiation of the Mollusca. Oxford: Oxford University Press. p. 361-370.
-
(1996)
Origin and Evolutionary Radiation of the Mollusca
, pp. 361-370
-
-
Cope, J.C.W.1
-
33
-
-
77954403053
-
BMGE (Block Mapping and Gathering with Entropy): Selection of phylogenetic informative regions from multiple sequence alignments
-
Criscuolo A, Gribaldo S. 2010. BMGE (Block Mapping and Gathering with Entropy): selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol Biol. 10:210.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 210
-
-
Criscuolo, A.1
Gribaldo, S.2
-
34
-
-
0000283933
-
On some Triassic cynodonts from Tanganyika
-
Cromptok AW, Parrington FR. 1955. On some Triassic cynodonts from Tanganyika. J Zool 125:617-669.
-
(1955)
J Zool
, vol.125
, pp. 617-669
-
-
Cromptok, A.W.1
Parrington, F.R.2
-
35
-
-
25144433320
-
Evolution of a unique mitotype-specific protein-coding extension of the cytochrome c oxidase II gene in freshwater mussels (Bivalvia: Unionida)
-
Curole JP, Kocher TD. 2005. Evolution of a unique mitotype-specific protein-coding extension of the cytochrome c oxidase II gene in freshwater mussels (Bivalvia: Unionida). J Mol Evol. 61:381-389.
-
(2005)
J Mol Evol
, vol.61
, pp. 381-389
-
-
Curole, J.P.1
Kocher, T.D.2
-
36
-
-
0036678103
-
Intracellular gene transfer: Reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase
-
Daley DO, Clifton R, Whelan J. 2002. Intracellular gene transfer: reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase. Proc Natl Acad Sci U S A. 99:10510-10515.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 10510-10515
-
-
Daley, D.O.1
Clifton, R.2
Whelan, J.3
-
37
-
-
79954529507
-
ProtTest 3: Fast selection of best-fit models of protein evolution
-
Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27:1164-1165.
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
38
-
-
84900560869
-
Evolution of mitochondria reconstructed from the energy metabolism of living bacteria
-
Degli Esposti M, et al. 2014. Evolution of mitochondria reconstructed from the energy metabolism of living bacteria. PLoS One 9:e96566.
-
(2014)
PLoS One
, vol.9
-
-
Degli Esposti, M.1
-
39
-
-
14644430471
-
PROBCONS: Probabilistic consistency-based multiple sequence alignment
-
Do CB, Mahabhashyam MSP, Brudno M, Batzoglou S. 2005. PROBCONS: probabilistic consistency-based multiple sequence alignment. Genome Res. 15:330-340.
-
(2005)
Genome Res
, vol.15
, pp. 330-340
-
-
Do, C.B.1
Mahabhashyam, M.S.P.2
Brudno, M.3
Batzoglou, S.4
-
40
-
-
77949285980
-
Mitochondrial phylogenomics of the Bivalvia (Mollusca): Searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA
-
Doucet-Beaupré H, et al. 2010. Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA. BMC Evol Biol. 10:50.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 50
-
-
Doucet-Beaupré, H.1
-
41
-
-
3142658737
-
Assessing the relative rate of (mitochondrial) genomic change
-
Dowton M. 2004. Assessing the relative rate of (mitochondrial) genomic change. Genetics 167:1027-1030.
-
(2004)
Genetics
, vol.167
, pp. 1027-1030
-
-
Dowton, M.1
-
42
-
-
47949097485
-
Noisy: Identification of problematic columns in multiple sequence alignments
-
Dress AWM, et al. 2008. Noisy: identification of problematic columns in multiple sequence alignments. Algorithm Mol Biol. 3:7.
-
(2008)
Algorithm Mol Biol
, vol.3
, pp. 7
-
-
Dress, A.W.M.1
-
43
-
-
33748912955
-
The complete sequences and gene organization of the mitochondrial genomes of the heterodont bivalves Acanthocardia tubercolata and Hiatella arctica and the first record for a putative Atpase subunit 8 gene in marine bivalves
-
Dreyer H, Steiner G. 2006. The complete sequences and gene organization of the mitochondrial genomes of the heterodont bivalves Acanthocardia tubercolata and Hiatella arctica and the first record for a putative Atpase subunit 8 gene in marine bivalves. Front Zool 3:13.
-
(2006)
Front Zool
, vol.3
, pp. 13
-
-
Dreyer, H.1
Steiner, G.2
-
44
-
-
0242307871
-
Molecular phylogeny of Anomalodesmata (Mollusca: Bivalvia) inferred from 18S rRNA sequences
-
Dreyer H, Steiner G, Harper EM. 2003. Molecular phylogeny of Anomalodesmata (Mollusca: Bivalvia) inferred from 18S rRNA sequences. Zool J Linn Soc 139:229-246.
-
(2003)
Zool J Linn Soc
, vol.139
, pp. 229-246
-
-
Dreyer, H.1
Steiner, G.2
Harper, E.M.3
-
45
-
-
0002691178
-
A re-examination of the Karroo succession and fossil localities of part of the Upper Luangwa Valley
-
Drysdall AR, Kitching JW. 1963. A re-examination of the Karroo succession and fossil localities of part of the Upper Luangwa Valley. Memoir of the Geological Survey of Northern Rhodesia 1:1-62.
-
(1963)
Memoir of the Geological Survey of Northern Rhodesia
, vol.1
, pp. 1-62
-
-
Drysdall, A.R.1
Kitching, J.W.2
-
46
-
-
84861604521
-
Multiple comparisons using rank sums
-
Dunn OJ. 1964. Multiple comparisons using rank sums. Technometrics 6:241-252.
-
(1964)
Technometrics
, vol.6
, pp. 241-252
-
-
Dunn, O.J.1
-
47
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
48
-
-
84984557579
-
Part N, revised, volume 1, chapter 16: Origin and early evolution of the Bivalvia
-
Fang Z-J, Sánchez TM. 2012. Part N, revised, volume 1, chapter 16: origin and early evolution of the Bivalvia. Treatise Online 43:1-21
-
(2012)
Treatise Online
, vol.43
, pp. 1-21
-
-
Fang, Z.-J.1
Sánchez, T.M.2
-
49
-
-
33749451489
-
An introduction to Ordovician bivalves of southern China, with a discussion of the early evolution of the Bivalvia
-
Fang Z-J. 2006. An introduction to Ordovician bivalves of southern China, with a discussion of the early evolution of the Bivalvia. Geo J. 41:303-328.
-
(2006)
Geo J
, vol.41
, pp. 303-328
-
-
Fang, Z.-J.1
-
50
-
-
0028090066
-
The extrachromosomal DNAs of apicomplexan parasites
-
Feagin JE. 1994. The extrachromosomal DNAs of apicomplexan parasites. Annu Rev Microbiol. 48:81-104.
-
(1994)
Annu Rev Microbiol
, vol.48
, pp. 81-104
-
-
Feagin, J.E.1
-
51
-
-
0032871834
-
Finding families for genomic ORFans
-
Fischer D, Eisenberg D. 1999. Finding families for genomic ORFans. Bioinformatics 15:759-762.
-
(1999)
Bioinformatics
, vol.15
, pp. 759-762
-
-
Fischer, D.1
Eisenberg, D.2
-
52
-
-
28944434614
-
Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales
-
Fitzpatrick DA, Creevey CJ, McInerney JO. 2006. Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Mol Biol Evol. 23:74-85.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 74-85
-
-
Fitzpatrick, D.A.1
Creevey, C.J.2
McInerney, J.O.3
-
53
-
-
0037155141
-
The typically mitochondrial DNA-encoded ATP6 subunit of the F1F0-ATPase is encoded by a nuclear gene in Chlamydomonas reinhardtii
-
Funes S, et al. 2002. The typically mitochondrial DNA-encoded ATP6 subunit of the F1F0-ATPase is encoded by a nuclear gene in Chlamydomonas reinhardtii. J Biol Chem. 277:6051-6058.
-
(2002)
J Biol Chem
, vol.277
, pp. 6051-6058
-
-
Funes, S.1
-
54
-
-
84973311126
-
Mitogenomics of southern hemisphere blue mussels (Bivalvia: Pteriomorphia): Insights into the evolutionary characteristics of the Mytilus edulis complex
-
Gaitán-Espitia JD, Quintero-Galvis JF, Mesas A, D'Elía G. 2016. Mitogenomics of southern hemisphere blue mussels (Bivalvia: Pteriomorphia): insights into the evolutionary characteristics of the Mytilus edulis complex. Sci Rep 6:26853.
-
(2016)
Sci Rep
, vol.6
, pp. 26853
-
-
Gaitán-Espitia, J.D.1
Quintero-Galvis, J.F.2
Mesas, A.3
D'Elía, G.4
-
55
-
-
84972492387
-
Inference from iterative simulation using multiple sequences
-
Gelman A, Rubin DB. 1992. Inference from iterative simulation using multiple sequences. Stat Sci. 7:457-511.
-
(1992)
Stat Sci
, vol.7
, pp. 457-511
-
-
Gelman, A.1
Rubin, D.B.2
-
56
-
-
84891654512
-
Structure, transcription, and variability of metazoan mitochondrial genome: Perspectives from an unusual mitochondrial inheritance system
-
Ghiselli F, et al. 2013. Structure, transcription, and variability of metazoan mitochondrial genome: perspectives from an unusual mitochondrial inheritance system. Genome Biol Evol. 5:1535-1554.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1535-1554
-
-
Ghiselli, F.1
-
57
-
-
78751479326
-
Strict sex-specific mtDNA segregation in the germ line of the DUI species Venerupis philippinarum (Bivalvia: Veneridae)
-
Ghiselli F, Milani L, Passamonti M. 2011. Strict sex-specific mtDNA segregation in the germ line of the DUI species Venerupis philippinarum (Bivalvia: Veneridae). Mol Biol Evol. 28:949-961.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 949-961
-
-
Ghiselli, F.1
Milani, L.2
Passamonti, M.3
-
58
-
-
33646725128
-
Evidence for a clade composed of molluscs with serially repeated structures: Monoplacophorans are related to chitons
-
Giribet G, et al. 2006. Evidence for a clade composed of molluscs with serially repeated structures: monoplacophorans are related to chitons. Proc Natl Acad Sci U S A. 103:7723-7728.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 7723-7728
-
-
Giribet, G.1
-
59
-
-
0037649521
-
Bivalve phylogeny and molecular data
-
Lydeard C, Lindberg D, editors. Washington, DC: Smithsonian Institution Press
-
Giribet G, Distel DL. 2003. Bivalve phylogeny and molecular data. In: Lydeard C, Lindberg D, editors. Molecular Systematics and Phylogeography of Mollusks. Washington, DC: Smithsonian Institution Press. p. 45-90.
-
(2003)
Molecular Systematics and Phylogeography of Mollusks
, pp. 45-90
-
-
Giribet, G.1
Distel, D.L.2
-
60
-
-
0036453528
-
On bivalve phylogeny: A high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data
-
Giribet G, Wheeler WC. 2002. On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data. Invertebr Biol. 121:271-324.
-
(2002)
Invertebr Biol
, vol.121
, pp. 271-324
-
-
Giribet, G.1
Wheeler, W.C.2
-
61
-
-
52549130466
-
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
-
Gissi C, Iannelli F, Pesole G. 2008. Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 101:301-320.
-
(2008)
Heredity
, vol.101
, pp. 301-320
-
-
Gissi, C.1
Iannelli, F.2
Pesole, G.3
-
62
-
-
84921496282
-
A phylogenetic backbone for Bivalvia: An RNA-seq approach
-
González VL, et al. 2015. A phylogenetic backbone for Bivalvia: an RNA-seq approach. Proc R Soc B Biol Sci. 282:20142332.
-
(2015)
Proc R Soc B Biol Sci
, vol.282
, pp. 20142332
-
-
González, V.L.1
-
63
-
-
30744437133
-
On the correlation between composition and site-specific evolutionary rate: Implications for phylogenetic inference
-
Gowri-Shankar V, Rattray M. 2006. On the correlation between composition and site-specific evolutionary rate: implications for phylogenetic inference. Mol Biol Evol. 23:352-364.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 352-364
-
-
Gowri-Shankar, V.1
Rattray, M.2
-
64
-
-
0003342352
-
Redefinition, stratigraphy and depostional environments of the mottville member (hamilton group) in central and eastern New York
-
Grasso TX. 1986. Redefinition, stratigraphy and depostional environments of the mottville member (hamilton group) in central and eastern New York. N Y State Mus Bull. 457:5-31.
-
(1986)
N Y State Mus Bull
, vol.457
, pp. 5-31
-
-
Grasso, T.X.1
-
66
-
-
0034913239
-
The origin and early evolution of mitochondria
-
Gray MW, Burger G, Lang BF. 2001. The origin and early evolution of mitochondria. Genome Biol. 2:1018.1-1018.5.
-
(2001)
Genome Biol
, vol.2
, pp. 1018.1-1018.5
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
68
-
-
84892433973
-
The largest unassigned regions of the male- and female-transmitted mitochondrial DNAs in Musculista senhousia (Bivalvia Mytilidae)
-
Guerra D, Ghiselli F, Passamonti M. 2014. The largest unassigned regions of the male- and female-transmitted mitochondrial DNAs in Musculista senhousia (Bivalvia Mytilidae). Gene 536:316-325.
-
(2014)
Gene
, vol.536
, pp. 316-325
-
-
Guerra, D.1
Ghiselli, F.2
Passamonti, M.3
-
69
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
70
-
-
33751006714
-
Reconstructing the Anomalodesmata (Mollusca: Bivalvia): Morphology and molecules
-
Harper EM, Dreyer H, Steiner G. 2006. Reconstructing the Anomalodesmata (Mollusca: Bivalvia): morphology and molecules. Zool J Linn Soc 148:395-420.
-
(2006)
Zool J Linn Soc
, vol.148
, pp. 395-420
-
-
Harper, E.M.1
Dreyer, H.2
Steiner, G.3
-
71
-
-
33646882142
-
CpG + CpNpG analysis of protein-coding sequences from tomato
-
Hobolth A, Nielsen R, Wang Y, Wu F, Tanksley SD. 2006. CpG + CpNpG analysis of protein-coding sequences from tomato. Mol Biol Evol. 23 1318-1323.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1318-1323
-
-
Hobolth, A.1
Nielsen, R.2
Wang, Y.3
Wu, F.4
Tanksley, S.D.5
-
72
-
-
0030838078
-
Phylogenetic evidence for role-reversals of gender-associated mitochondrial DNA genomes in Mytilus (Bivalvia: Mytilidae)
-
Hoeh WR, Stewart DT, Saavedra C, Sutherland BW, Zouros E. 1997. Phylogenetic evidence for role-reversals of gender-associated mitochondrial DNA genomes in Mytilus (Bivalvia: Mytilidae). Mol Biol Evol. 14:959-967.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 959-967
-
-
Hoeh, W.R.1
Stewart, D.T.2
Saavedra, C.3
Sutherland, B.W.4
Zouros, E.5
-
73
-
-
67650706330
-
Cutoff criteria for fit indexes in covariance structure analysis: Conventional criteria versus new alternatives
-
Hu L-T, Bentler PM. 1999. Cutoff criteria for fit indexes in covariance structure analysis: Conventional criteria versus new alternatives. Struct Equat Model Multidiscipl J. 6:1-55.
-
(1999)
Struct Equat Model Multidiscipl J
, vol.6
, pp. 1-55
-
-
Hu, L.-T.1
Bentler, P.M.2
-
74
-
-
84868007353
-
Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks
-
Huson DH, Scornavacca C. 2012. Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Syst Biol. 61 1061-1067.
-
(2012)
Syst Biol
, vol.61
, pp. 1061-1067
-
-
Huson, D.H.1
Scornavacca, C.2
-
75
-
-
0030336504
-
Sample quantiles in statistical packages
-
Hyndman RJ, Fan Y. 1996. Sample quantiles in statistical packages. Am Stat 50:361-365.
-
(1996)
Am Stat
, vol.50
, pp. 361-365
-
-
Hyndman, R.J.1
Fan, Y.2
-
76
-
-
0025061094
-
Limitations of the evolutionary parsimony method of phylogenetic analysis
-
Jin L, Nei M. 1990. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol Biol Evol. 7:82-102.
-
(1990)
Mol Biol Evol
, vol.7
, pp. 82-102
-
-
Jin, L.1
Nei, M.2
-
77
-
-
47049086792
-
PhyloWidget: Web-based visualizations for the tree of life
-
Jordan GE, Piel WH. 2008. PhyloWidget: web-based visualizations for the tree of life. Bioinformatics 24:1641-1642.
-
(2008)
Bioinformatics
, vol.24
, pp. 1641-1642
-
-
Jordan, G.E.1
Piel, W.H.2
-
78
-
-
0025607160
-
The genetic code in mitochondria and chloroplasts
-
Jukes TH, Osawa S. 1990. The genetic code in mitochondria and chloroplasts. Experientia 46:1117-1126.
-
(1990)
Experientia
, vol.46
, pp. 1117-1126
-
-
Jukes, T.H.1
Osawa, S.2
-
79
-
-
34250493668
-
A second generation little jiffy
-
Kaiser HF. 1970. A second generation little jiffy. Psychometrika 35:401-415.
-
(1970)
Psychometrika
, vol.35
, pp. 401-415
-
-
Kaiser, H.F.1
-
80
-
-
84964312706
-
MitoCOGs: Clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes
-
Kannan S, Rogozin IB, Koonin EV. 2014. MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes. BMC Evol Biol. 14:237.
-
(2014)
BMC Evol Biol
, vol.14
, pp. 237
-
-
Kannan, S.1
Rogozin, I.B.2
Koonin, E.V.3
-
81
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772-780.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
82
-
-
33846809192
-
Dynamics of reductive genome evolution in mitochondria and obligate intracellular microbes
-
Khachane AN, Timmis KN, Martins dos Santos VA. 2007. Dynamics of reductive genome evolution in mitochondria and obligate intracellular microbes. Mol Biol Evol. 24:449-456.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 449-456
-
-
Khachane, A.N.1
Timmis, K.N.2
Martins Dos Santos, V.A.3
-
84
-
-
80053132393
-
Phylogenomics reveals deep molluscan relationships
-
Kocot KM, et al. 2011. Phylogenomics reveals deep molluscan relationships. Nature 477:452-456.
-
(2011)
Nature
, vol.477
, pp. 452-456
-
-
Kocot, K.M.1
-
85
-
-
3042648616
-
High correlation between the turnover of nucleotides under High correlation between the turnover of nucleotides under
-
Kowalczuk M, et al. 2001. High correlation between the turnover of nucleotides under High correlation between the turnover of nucleotides under. BMC Evol Biol. 1:13.
-
(2001)
BMC Evol Biol
, vol.1
, pp. 13
-
-
Kowalczuk, M.1
-
86
-
-
55049102433
-
A new bivalve community from the lower Ludlow of the Prague Basin (Perunica, Bohemia)
-
Kříž J. 2008. A new bivalve community from the lower Ludlow of the Prague Basin (Perunica, Bohemia). Bull Geosci 83:237-280.
-
(2008)
Bull Geosci
, vol.83
, pp. 237-280
-
-
Kříž, J.1
-
87
-
-
84943709252
-
Use of ranks in one-criterion variance analysis
-
Kruskal WH, Wallis A. 1952. Use of ranks in one-criterion variance analysis. J Am Stat Assoc 47:583-621.
-
(1952)
J Am Stat Assoc
, vol.47
, pp. 583-621
-
-
Kruskal, W.H.1
Wallis, A.2
-
88
-
-
77955855629
-
The atypical presence of the paternal mitochondrial DNA in somatic tissues of male and female individuals of the blue mussel species Mytilus galloprovincialis
-
Kyriakou E, Zouros E, Rodakis GC. 2010. The atypical presence of the paternal mitochondrial DNA in somatic tissues of male and female individuals of the blue mussel species Mytilus galloprovincialis. BMC Res Notes 3:222.
-
(2010)
BMC Res Notes
, vol.3
, pp. 222
-
-
Kyriakou, E.1
Zouros, E.2
Rodakis, G.C.3
-
89
-
-
84871587989
-
The origin of membrane bioenergetics
-
Lane N, Martin WF. 2012. The origin of membrane bioenergetics. Cell 151:1406-1416.
-
(2012)
Cell
, vol.151
, pp. 1406-1416
-
-
Lane, N.1
Martin, W.F.2
-
90
-
-
70349791267
-
Mitochondria: Key to complexity
-
Martin WF, Müller M, editors. Berlin-Heidelberg: Springer-Verlag
-
Lane N. 2007. Mitochondria: key to complexity. In: Martin WF, Müller M, editors. Origin of Mitochondria and Hydrogenosomes. Berlin-Heidelberg: Springer-Verlag. p. 13-38.
-
(2007)
Origin of Mitochondria and Hydrogenosomes
, pp. 13-38
-
-
Lane, N.1
-
91
-
-
84861380450
-
PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses
-
Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29:1695-1701.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1695-1701
-
-
Lanfear, R.1
Calcott, B.2
Ho, S.Y.W.3
Guindon, S.4
-
92
-
-
13944278871
-
Transfer RNA gene recruitment in mitochondrial DNA
-
Lavrov DV, Lang BF. 2005. Transfer RNA gene recruitment in mitochondrial DNA. Trends Genet. 21:129-133.
-
(2005)
Trends Genet
, vol.21
, pp. 129-133
-
-
Lavrov, D.V.1
Lang, B.F.2
-
93
-
-
46749110034
-
FactoMineR: An R package for multivariate analysis
-
Lê S, Josse J, Husson F. 2008. FactoMineR: an R package for multivariate analysis. J Stat Softw 25:1-18.
-
(2008)
J Stat Softw
, vol.25
, pp. 1-18
-
-
Lê, S.1
Josse, J.2
Husson, F.3
-
94
-
-
0033917042
-
Phylogenies inferred from mitochondrial gene orders - A cautionary tale from the parasitic flatworms
-
Le TH, et al. 2000. Phylogenies inferred from mitochondrial gene orders - a cautionary tale from the parasitic flatworms. Mol Biol Evol. 17:1123-1125.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1123-1125
-
-
Le, T.H.1
-
95
-
-
84872101760
-
Complete mitochondrial DNA sequence of the ark shell Scapharca broughtonii: An ultra-large metazoan mitochondrial genome
-
Liu YG, Kurokawa T, Sekino M, Tanabe T, Watanabe K. 2013. Complete mitochondrial DNA sequence of the ark shell Scapharca broughtonii: an ultra-large metazoan mitochondrial genome. Comp Biochem Physiol D Genomics Proteomics 8:72-81.
-
(2013)
Comp Biochem Physiol D Genomics Proteomics
, vol.8
, pp. 72-81
-
-
Liu, Y.G.1
Kurokawa, T.2
Sekino, M.3
Tanabe, T.4
Watanabe, K.5
-
96
-
-
79957648061
-
PhyDesign: An online application for profiling phylogenetic informativeness
-
López-Giráldez F, Townsend JP. 2011. PhyDesign: an online application for profiling phylogenetic informativeness. BMC Evol Biol. 11:152.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 152
-
-
López-Giráldez, F.1
Townsend, J.P.2
-
97
-
-
84878864199
-
The hallmarks of aging
-
López-Otín C, Blasco MA, Partridge L, Serrano M, Kroemer G. 2013. The hallmarks of aging. Cell 153:19994-21217.
-
(2013)
Cell
, vol.153
, pp. 19994-21217
-
-
López-Otín, C.1
Blasco, M.A.2
Partridge, L.3
Serrano, M.4
Kroemer, G.5
-
98
-
-
82055164092
-
ViennaRNA Package 2.0
-
Lorenz R, et al. 2011. ViennaRNA Package 2.0. Algorithm Mol Biol. 6:26.
-
(2011)
Algorithm Mol Biol
, vol.6
, pp. 26
-
-
Lorenz, R.1
-
99
-
-
84892547787
-
Massively convergent evolution for ribosomal protein gene content in plastid and mitochondrial genomes
-
Maier UG, et al. 2013. Massively convergent evolution for ribosomal protein gene content in plastid and mitochondrial genomes. Genome Biol Evol. 5:2318-2329.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 2318-2329
-
-
Maier, U.G.1
-
100
-
-
0030850422
-
The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: A case study of functional redundancy in ancient pathways through endosymbiosis
-
Martin W, Schnarrenberger C. 1997. The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis. Curr Genet. 32:1-18.
-
(1997)
Curr Genet
, vol.32
, pp. 1-18
-
-
Martin, W.1
Schnarrenberger, C.2
-
101
-
-
0003336957
-
XXI. On the fossil botany and zoology of the rocks associated with the coal of Australia
-
M'Coy F. 1847. XXI. On the fossil botany and zoology of the rocks associated with the coal of Australia. Ann Mag Nat History 20:226-236.
-
(1847)
Ann Mag Nat History
, vol.20
, pp. 226-236
-
-
M'Coy, F.1
-
102
-
-
46149095496
-
The mitochondrial proteome: From inventory to function
-
Meisinger C, Sickmann A, Pfanner N. 2008. The mitochondrial proteome: from inventory to function. Cell 134:22-24.
-
(2008)
Cell
, vol.134
, pp. 22-24
-
-
Meisinger, C.1
Sickmann, A.2
Pfanner, N.3
-
103
-
-
0006404804
-
Devonian and Lower Carboniferous brachiopods and bivalves from western Libya
-
Mergl M, Massa D. 1992. Devonian and Lower Carboniferous brachiopods and bivalves from western Libya. Biostratigraphie Du Paleozoique 12:1-115.
-
(1992)
Biostratigraphie Du Paleozoique
, vol.12
, pp. 1-115
-
-
Mergl, M.1
Massa, D.2
-
104
-
-
84891717878
-
A comparative analysis of Mitochondrial ORFans: New clues on their origin and role in species with Doubly Uniparental Inheritance
-
Milani L, Ghiselli F, Guerra D, Breton S, Passamonti M. 2013. A comparative analysis of Mitochondrial ORFans: new clues on their origin and role in species with Doubly Uniparental Inheritance. Genome Biol Evol. 5:1408-1434.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1408-1434
-
-
Milani, L.1
Ghiselli, F.2
Guerra, D.3
Breton, S.4
Passamonti, M.5
-
105
-
-
28244495220
-
Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica
-
Milbury CA, Gaffney PM. 2005. Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Mar Biotechnol 7:697-712.
-
(2005)
Mar Biotechnol
, vol.7
, pp. 697-712
-
-
Milbury, C.A.1
Gaffney, P.M.2
-
106
-
-
67449137924
-
A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: A more objective means of data exclusion
-
Misof B, Misof K. 2009. A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion. Syst Biol. 58:21-34.
-
(2009)
Syst Biol
, vol.58
, pp. 21-34
-
-
Misof, B.1
Misof, K.2
-
107
-
-
36949083936
-
Coupling of phosphorylation to electron and hydrogen transfer by a chemi-osmotic type of mechanism
-
Mitchell P. 1961. Coupling of phosphorylation to electron and hydrogen transfer by a chemi-osmotic type of mechanism. Nature 191:144-148.
-
(1961)
Nature
, vol.191
, pp. 144-148
-
-
Mitchell, P.1
-
108
-
-
84948807996
-
Phanerozoic trends in ecospace utilization: The bivalve perspective
-
Mondal S, Harries PJ. 2016a. Phanerozoic trends in ecospace utilization: the bivalve perspective. Earth Sci Rev 152:106-118.
-
(2016)
Earth Sci Rev
, vol.152
, pp. 106-118
-
-
Mondal, S.1
Harries, P.J.2
-
109
-
-
84948835081
-
The effect of taxonomic corrections on phanerozoic generic richness trends in marine bivalves with a discussion on the Clade's overall history
-
Mondal S, Harries PJ. 2016b. The effect of taxonomic corrections on phanerozoic generic richness trends in marine bivalves with a discussion on the Clade's overall history. Paleobiology 42:157-171.
-
(2016)
Paleobiology
, vol.42
, pp. 157-171
-
-
Mondal, S.1
Harries, P.J.2
-
110
-
-
0006138589
-
A new Lower Ordovician bivalve family, the Thoraliidae (? Nuculoida), intepreted as actinodont deposit feeders
-
Morris NJ. 1980. A new Lower Ordovician bivalve family, the Thoraliidae (? Nuculoida), intepreted as actinodont deposit feeders. Bull Br Mus Nat History (Geology) 34:265-272.
-
(1980)
Bull Br Mus Nat History (Geology)
, vol.34
, pp. 265-272
-
-
Morris, N.J.1
-
111
-
-
0001379308
-
The evolutionary history of the Bivalvia
-
Taylor JD, editor. Oxford: Oxford University Press
-
Morton B. 1996. The evolutionary history of the Bivalvia. In: Taylor JD, editor. Origin and Evolutionary Radiation of the Mollusca. Oxford: Oxford University Press. p. 337-359.
-
(1996)
Origin and Evolutionary Radiation of the Mollusca
, pp. 337-359
-
-
Morton, B.1
-
112
-
-
0344436077
-
The genome of Rickettsia prowazekii and some thoughts on the origin of mitochondria and hydrogenosomes
-
Müller M, Martin W. 1999. The genome of Rickettsia prowazekii and some thoughts on the origin of mitochondria and hydrogenosomes. Bioessays 21:377-381.
-
(1999)
Bioessays
, vol.21
, pp. 377-381
-
-
Müller, M.1
Martin, W.2
-
114
-
-
77950849878
-
Ecologically distinct dinosaurian sister group shows early diversification of Ornithodira
-
Nesbitt SJ, et al. 2010. Ecologically distinct dinosaurian sister group shows early diversification of Ornithodira. Nature 464:95-98.
-
(2010)
Nature
, vol.464
, pp. 95-98
-
-
Nesbitt, S.J.1
-
115
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J. 2000. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol. 302:205-217.
-
(2000)
J Mol Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
116
-
-
80053112912
-
Different transcriptional ratios of male and female transmitted mitochondrial DNA and tissue-specific expression patterns in the blue mussel, Mytilus galloprovincialis
-
Obata M, Sano N, Komaru A. 2011. Different transcriptional ratios of male and female transmitted mitochondrial DNA and tissue-specific expression patterns in the blue mussel, Mytilus galloprovincialis. Dev Growth Diff 53:878-886.
-
(2011)
Dev Growth Diff
, vol.53
, pp. 878-886
-
-
Obata, M.1
Sano, N.2
Komaru, A.3
-
117
-
-
0026573893
-
The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum
-
Okimoto R, Macfarlane JL, Clary DO, Wolstenholme DR. 1992. The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics 130:471-498.
-
(1992)
Genetics
, vol.130
, pp. 471-498
-
-
Okimoto, R.1
Macfarlane, J.L.2
Clary, D.O.3
Wolstenholme, D.R.4
-
118
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
119
-
-
3042744353
-
Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences
-
Passamaneck YJ, Schander C, Halanych KM. 2004. Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences. Mol Phylogenet Evol. 32:25-38.
-
(2004)
Mol Phylogenet Evol
, vol.32
, pp. 25-38
-
-
Passamaneck, Y.J.1
Schander, C.2
Halanych, K.M.3
-
120
-
-
59949100674
-
Doubly uniparental inheritance: Two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution
-
Passamonti M, Ghiselli F. 2009. Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution. DNA Cell Biol. 28:1-10.
-
(2009)
DNA Cell Biol
, vol.28
, pp. 1-10
-
-
Passamonti, M.1
Ghiselli, F.2
-
121
-
-
80052593773
-
Mitochondrial genomes and Doubly Uniparental Inheritance: New insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae)
-
Passamonti M, Ricci A, Milani L, Ghiselli F. 2011. Mitochondrial genomes and Doubly Uniparental Inheritance: new insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae). BMC Genomics 12:442.
-
(2011)
BMC Genomics
, vol.12
, pp. 442
-
-
Passamonti, M.1
Ricci, A.2
Milani, L.3
Ghiselli, F.4
-
122
-
-
0346041565
-
Subunit II of cytochrome c oxidase in chlamydomonad algae is a heterodimer encoded by two independent nuclear genes
-
Pérez-Martínez X, et al. 2001. Subunit II of cytochrome c oxidase in chlamydomonad algae is a heterodimer encoded by two independent nuclear genes. J Biol Chem. 276:11302-11309.
-
(2001)
J Biol Chem
, vol.276
, pp. 11302-11309
-
-
Pérez-Martínez, X.1
-
123
-
-
0034730503
-
Unusual Location of a Mitochondrial Gene. Subunit III of cytochrome c oxidase is encoded in the nucleus of chlamydomonad algae
-
Pérez-Martínez X, et al. 2000. Unusual Location of a Mitochondrial Gene. Subunit III of cytochrome c oxidase is encoded in the nucleus of chlamydomonad algae. J Biol Chem. 275:30144-30152.
-
(2000)
J Biol Chem
, vol.275
, pp. 30144-30152
-
-
Pérez-Martínez, X.1
-
124
-
-
80055110730
-
A molecular phylogeny of bivalve mollusks: Ancient radiations and divergences as revealed by mitochondrial genes
-
Plazzi F, Ceregato A, Taviani M, Passamonti M. 2011. A molecular phylogeny of bivalve mollusks: ancient radiations and divergences as revealed by mitochondrial genes. PLoS One 6:e27174.
-
(2011)
PLoS One
, vol.6
-
-
Plazzi, F.1
Ceregato, A.2
Taviani, M.3
Passamonti, M.4
-
125
-
-
78049355057
-
Towards a molecular phylogeny of Mollusks: Bivalves' early evolution as revealed by mitochondrial genes
-
Plazzi F, Passamonti M. 2010. Towards a molecular phylogeny of Mollusks: Bivalves' early evolution as revealed by mitochondrial genes. Mol Phylogenet Evol. 57:641-657.
-
(2010)
Mol Phylogenet Evol
, vol.57
, pp. 641-657
-
-
Plazzi, F.1
Passamonti, M.2
-
126
-
-
84879033169
-
The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera
-
Plazzi F, Ribani A, Passamonti M. 2013. The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera. BMC Genomics 14:409.
-
(2013)
BMC Genomics
, vol.14
, pp. 409
-
-
Plazzi, F.1
Ribani, A.2
Passamonti, M.3
-
127
-
-
84953439121
-
The bivalve fauna from the Fezouata Formation (Lower Ordovician) of Morocco and its significance for palaeobiogeography, palaeoecology and early diversification of bivalves
-
Polechová M. 2015. The bivalve fauna from the Fezouata Formation (Lower Ordovician) of Morocco and its significance for palaeobiogeography, palaeoecology and early diversification of bivalves. Paleogeogr Paleoclimatol Paleoecol. http://dx.doi.org/10.1016/j.palaeo.2015.12.016.
-
(2015)
Paleogeogr Paleoclimatol Paleoecol
-
-
Polechová, M.1
-
128
-
-
0025338423
-
On the microassembly of integral membrane proteins
-
Popot JL, de Vitry C. 1990. On the microassembly of integral membrane proteins. Annu Rev Biophys Biophys Chem. 19:369-403.
-
(1990)
Annu Rev Biophys Biophys Chem
, vol.19
, pp. 369-403
-
-
Popot, J.L.1
De Vitry, C.2
-
129
-
-
0002218484
-
Rate4Site: An algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues
-
Pupko T, Bell RE, Mayrose I, Glaser F, Ben-Tal N. 2002. Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. Bioinformatics 18:S71-S77.
-
(2002)
Bioinformatics
, vol.18
, pp. S71-S77
-
-
Pupko, T.1
Bell, R.E.2
Mayrose, I.3
Glaser, F.4
Ben-Tal, N.5
-
130
-
-
0032932614
-
Interspecies transfer of female mitochondrial DNA is coupled with role-reversals and departure from neutrality in the mussel Mytilus trossulus
-
Quesada H, Wenne R, Skibinski DOF. 1999. Interspecies transfer of female mitochondrial DNA is coupled with role-reversals and departure from neutrality in the mussel Mytilus trossulus. Mol Biol Evol. 16:655-665.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 655-665
-
-
Quesada, H.1
Wenne, R.2
Skibinski, D.O.F.3
-
133
-
-
0033991171
-
Transcriptional mapping and RNA processing of the Plasmodium falciparum mitochondrial mRNAs
-
Rehkopf DH, Gillespie DE, Harrell MI, Feagin JE. 2000. Transcriptional mapping and RNA processing of the Plasmodium falciparum mitochondrial mRNAs. Mol Biochem Parasitol. 105:91-103.
-
(2000)
Mol Biochem Parasitol
, vol.105
, pp. 91-103
-
-
Rehkopf, D.H.1
Gillespie, D.E.2
Harrell, M.I.3
Feagin, J.E.4
-
134
-
-
84856489442
-
HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment
-
Remmert M, Biegert A, Hauser A, Söding J. 2012. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods 9:173-175.
-
(2012)
Nat Methods
, vol.9
, pp. 173-175
-
-
Remmert, M.1
Biegert, A.2
Hauser, A.3
Söding, J.4
-
135
-
-
78650547821
-
Unusual conservation of mitochondrial gene order in Crassostrea oysters: Evidence for recent speciation in Asia
-
Ren J, Liu X, Jiang F, Guo X, Liu B. 2010. Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia. BMC Evol Biol. 10:394.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 394
-
-
Ren, J.1
Liu, X.2
Jiang, F.3
Guo, X.4
Liu, B.5
-
137
-
-
0031950474
-
Asymmetrical directional mutation pressure in the mitochondrial genome of mammals
-
Reyes A, Gissi C, Pesole G, Saccone C. 1998. Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. Mol Biol Evol. 15:957-966.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 957-966
-
-
Reyes, A.1
Gissi, C.2
Pesole, G.3
Saccone, C.4
-
138
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A. 2000. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet. 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
139
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F, et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539-542.
-
(2012)
Syst Biol
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
-
140
-
-
7544229237
-
Distribution paléogéographique des mollusques bivalves durant l'Ordovicien
-
Sánchez TM, Babin C. 2003. Distribution paléogéographique des mollusques bivalves durant l'Ordovicien. Géodiversitas 25:243-259.
-
(2003)
Géodiversitas
, vol.25
, pp. 243-259
-
-
Sánchez, T.M.1
Babin, C.2
-
141
-
-
33646441938
-
Taxonomic position and phylogenetic relationships of the bivalve Goniophorina Isberg and related genera from the Early Ordovician of northwestern Argentina
-
Sánchez TM. 2006. Taxonomic position and phylogenetic relationships of the bivalve Goniophorina Isberg and related genera from the Early Ordovician of northwestern Argentina. Ameghiniana 43:113-122.
-
(2006)
Ameghiniana
, vol.43
, pp. 113-122
-
-
Sánchez, T.M.1
-
142
-
-
49949105101
-
The early bivalve radiation in the Ordovician Gondwanan basins of Argentina
-
Sánchez TM. 2008. The early bivalve radiation in the Ordovician Gondwanan basins of Argentina. Alcheringa 32:223-246.
-
(2008)
Alcheringa
, vol.32
, pp. 223-246
-
-
Sánchez, T.M.1
-
143
-
-
0037314098
-
r8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
Sanderson MJ. 2003. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19:301-302.
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
144
-
-
0004235430
-
-
New York: J. Wiley and Sons
-
Scheffler I. 2008. Mitochondria. New York: J. Wiley and Sons.
-
(2008)
Mitochondria
-
-
Scheffler, I.1
-
145
-
-
2542462934
-
Rates of gene rearrangement and nucleotide substitution are correlated in the mitochondrial genomes of insects
-
Shao R, Dowton M, Murrell A, Barker SC. 2003. Rates of gene rearrangement and nucleotide substitution are correlated in the mitochondrial genomes of insects. Mol Biol Evol. 20:1612-1619.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1612-1619
-
-
Shao, R.1
Dowton, M.2
Murrell, A.3
Barker, S.C.4
-
146
-
-
84864566049
-
Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca)
-
Sharma PP, et al. 2012. Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca). Mol Phylogenet Evol. 65:64-74.
-
(2012)
Mol Phylogenet Evol
, vol.65
, pp. 64-74
-
-
Sharma, P.P.1
-
148
-
-
1542510106
-
Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
-
Siepel A, Haussler D. 2004. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. Mol Biol Evol. 21:468-488.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 468-488
-
-
Siepel, A.1
Haussler, D.2
-
149
-
-
69149110054
-
Molluscan evolutionary genomics
-
Ponder W, Lindberg DR, editors. Berkeley: University of California Press
-
Simison WB, Boore JL. 2008. Molluscan evolutionary genomics. In: Ponder W, Lindberg DR, editors. Phylogeny and Evolution of the Mollusca. Berkeley: University of California Press. p. 447-461.
-
(2008)
Phylogeny and Evolution of the Mollusca
, pp. 447-461
-
-
Simison, W.B.1
Boore, J.L.2
-
150
-
-
3843150595
-
Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters
-
Simmons MP, Carr TG, O'Neill K. 2004. Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters. Mol Phylogenet Evol. 32:913-926.
-
(2004)
Mol Phylogenet Evol
, vol.32
, pp. 913-926
-
-
Simmons, M.P.1
Carr, T.G.2
O'Neill, K.3
-
151
-
-
0034350427
-
Gaps as characters in sequence-based phylogenetic analyses
-
Simmons MP, Ochoterena H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst Biol. 49:369-381.
-
(2000)
Syst Biol
, vol.49
, pp. 369-381
-
-
Simmons, M.P.1
Ochoterena, H.2
-
153
-
-
0028099531
-
Sex limited mitochondrial DNA transmission in the marine mussel Mytilus edulis
-
Skibinski DOF, Gallagher C, Beynon CM. 1994b. Sex limited mitochondrial DNA transmission in the marine mussel Mytilus edulis. Genetics 138:801-809.
-
(1994)
Genetics
, vol.138
, pp. 801-809
-
-
Skibinski, D.O.F.1
Gallagher, C.2
Beynon, C.M.3
-
154
-
-
78649999609
-
Comparative genomics of marine mussels (Mytilus spp.) gender associated mtDNA: Rapidly evolving atp8
-
Smietanka B, Burzyński A, Wenne R. 2010. Comparative genomics of marine mussels (Mytilus spp.) gender associated mtDNA: rapidly evolving atp8. J Mol Evol. 71:385-400.
-
(2010)
J Mol Evol
, vol.71
, pp. 385-400
-
-
Smietanka, B.1
Burzyński, A.2
Wenne, R.3
-
155
-
-
83555166100
-
Resolving the evolutionary relationships of molluscs with phylogenomic tools
-
Smith SA, et al. 2011. Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature 480:364-367.
-
(2011)
Nature
, vol.480
, pp. 364-367
-
-
Smith, S.A.1
-
157
-
-
33847112969
-
Phylogenetic Models of Rate Heterogeneity: A High Performance Computing Perspective
-
Washington: IEEE Computer Society Press
-
Stamatakis A. 2006. Phylogenetic Models of Rate Heterogeneity: A High Performance Computing Perspective. In: Proceedings 20th IEEE International Parallel & Distributed Processing Symposium. Washington: IEEE Computer Society Press. p. 278-286.
-
(2006)
Proceedings 20th IEEE International Parallel & Distributed Processing Symposium
, pp. 278-286
-
-
Stamatakis, A.1
-
158
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312-1313.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
159
-
-
84883454674
-
Mitogenomics does not resolve deep molluscan relationships (yet?)
-
Stöger I, Schrödl M. 2013. Mitogenomics does not resolve deep molluscan relationships (yet?). Mol Phylogenet Evol. 69:376-392.
-
(2013)
Mol Phylogenet Evol
, vol.69
, pp. 376-392
-
-
Stöger, I.1
Schrödl, M.2
-
160
-
-
84920162456
-
The complete mitochondrial DNA of Tegillarca granosa and comparative mitogenomic analyses of three Arcidae species
-
Sun S, Kong L, Yu H, Li Q. 2015. The complete mitochondrial DNA of Tegillarca granosa and comparative mitogenomic analyses of three Arcidae species. Gene 557:61-70.
-
(2015)
Gene
, vol.557
, pp. 61-70
-
-
Sun, S.1
Kong, L.2
Yu, H.3
Li, Q.4
-
161
-
-
77956095537
-
Mitochondria and cell death: Outer membrane permeabilization and beyond
-
Tait SW, Green DR. 2010. Mitochondria and cell death: outer membrane permeabilization and beyond. Nat Rev Mol Cell Biol. 11:621-632.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 621-632
-
-
Tait, S.W.1
Green, D.R.2
-
162
-
-
65649154661
-
Phylogenetic position of the bivalve family Cyrenoididae - removal from (and further dismantling of) the superfamily Lucinoidea
-
Taylor JD, Glover EA, Williams ST. 2009. Phylogenetic position of the bivalve family Cyrenoididae - removal from (and further dismantling of) the superfamily Lucinoidea. Nautilus 123:9-13.
-
(2009)
Nautilus
, vol.123
, pp. 9-13
-
-
Taylor, J.D.1
Glover, E.A.2
Williams, S.T.3
-
163
-
-
35448929136
-
A molecular phylogeny of heterodont bivalves (Mollusca: Bivalvia: Heterodonta): New analyses of 18S and 28S rRNA genes
-
Taylor JD, Williams ST, Glover EA, Dyal P. 2007. A molecular phylogeny of heterodont bivalves (Mollusca: Bivalvia: Heterodonta): new analyses of 18S and 28S rRNA genes. Zool Scr 36:587-606.
-
(2007)
Zool Scr
, vol.36
, pp. 587-606
-
-
Taylor, J.D.1
Williams, S.T.2
Glover, E.A.3
Dyal, P.4
-
164
-
-
80051986176
-
Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade
-
Thrash JC, et al. 2011. Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade. Sci Rep 1:13.
-
(2011)
Sci Rep
, vol.1
, pp. 13
-
-
Thrash, J.C.1
-
165
-
-
0038739407
-
Mesozoic and tertiary insects of Queensland and New South Wales. Descriptions of the fossil Insects and stratigraphical features
-
Tillyard RJ, Dunstan B. 1916. Mesozoic and tertiary insects of Queensland and New South Wales. Descriptions of the fossil Insects and stratigraphical features. Queensl Geol Survey 253:1-63.
-
(1916)
Queensl Geol Survey
, vol.253
, pp. 1-63
-
-
Tillyard, R.J.1
Dunstan, B.2
-
166
-
-
84865202478
-
Phylogenetic signal and noise: Predicting the power of a data set to resolve phylogeny
-
Townsend JP, Su Z, Tekle YI. 2012. Phylogenetic signal and noise: predicting the power of a data set to resolve phylogeny. Syst Biol. 61:835-849.
-
(2012)
Syst Biol
, vol.61
, pp. 835-849
-
-
Townsend, J.P.1
Su, Z.2
Tekle, Y.I.3
-
167
-
-
6744245357
-
A reliability coefficient for maximum likelihood factor analysis
-
Tucker LR, Lewis C. 1973. A reliability coefficient for maximum likelihood factor analysis. Psychometrika 38:1-10.
-
(1973)
Psychometrika
, vol.38
, pp. 1-10
-
-
Tucker, L.R.1
Lewis, C.2
-
168
-
-
33747350705
-
Lophotrochozoan mitochondrial genomes
-
Vallès Y, Boore JL. 2006. Lophotrochozoan mitochondrial genomes. Integr Comp Biol. 46:544-557.
-
(2006)
Integr Comp Biol
, vol.46
, pp. 544-557
-
-
Vallès, Y.1
Boore, J.L.2
-
169
-
-
79961207245
-
Mitochondrial function in the human oocyte and embryo and their role in developmental competence
-
Van Blerkom J. 2011. Mitochondrial function in the human oocyte and embryo and their role in developmental competence. Mitochondrion. 11 797-813.
-
(2011)
Mitochondrion
, vol.11
, pp. 797-813
-
-
Van Blerkom, J.1
-
170
-
-
0022532186
-
Why mitochondria need a genome
-
von Heijne G. 1986. Why mitochondria need a genome. FEBS Lett. 198:1-4.
-
(1986)
FEBS Lett
, vol.198
, pp. 1-4
-
-
Von Heijne, G.1
-
171
-
-
84892715273
-
Bioenergetics in human evolution and disease: Implications for the origins of biological complexity and the missing genetic variation of common diseases
-
Wallace DC. 2013. Bioenergetics in human evolution and disease: implications for the origins of biological complexity and the missing genetic variation of common diseases. Philos Trans R Soc Lond B Biol Sci. 368:20120267.
-
(2013)
Philos Trans R Soc Lond B Biol Sci
, vol.368
, pp. 20120267
-
-
Wallace, D.C.1
-
172
-
-
0002046410
-
Origin of the molluscan class Bivalvia and a phylogeny of major groups
-
Johnston PA, Haggart JW, editors. Calgary: University of Calgary Press
-
Waller TR. 1998. Origin of the molluscan class Bivalvia and a phylogeny of major groups. In: Johnston PA, Haggart JW, editors. Bivalves: An Eon of Evolution. Calgary: University of Calgary Press. p. 1-45.
-
(1998)
Bivalves: An Eon of Evolution
, pp. 1-45
-
-
Waller, T.R.1
-
173
-
-
51749095104
-
Phylocom: Software for the analysis of phylogenetic community structure and trait evolution
-
Webb CO, Ackerly DD, Kembel SW. 2008. Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24:2098-2100.
-
(2008)
Bioinformatics
, vol.24
, pp. 2098-2100
-
-
Webb, C.O.1
Ackerly, D.D.2
Kembel, S.W.3
-
175
-
-
34347390665
-
A robust species tree for the alphaproteobacteria
-
Williams KP, Sobral BW, Dickerman AW. 2007. A robust species tree for the alphaproteobacteria. J Bacteriol 189:4578-4586.
-
(2007)
J Bacteriol
, vol.189
, pp. 4578-4586
-
-
Williams, K.P.1
Sobral, B.W.2
Dickerman, A.W.3
-
176
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
-
Wong WSW, Yang Z, Goldman N, Nielsen R. 2004. Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168:1041-1051.
-
(2004)
Genetics
, vol.168
, pp. 1041-1051
-
-
Wong, W.S.W.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
-
177
-
-
84865184959
-
New features of Asian Crassostrea oyster mitochondrial genomes: A novel alloacceptor tRNA gene recruitment and two novel ORFs
-
Wu X, Li X, Li L, Xu X, et al. 2012. New features of Asian Crassostrea oyster mitochondrial genomes: a novel alloacceptor tRNA gene recruitment and two novel ORFs. Gene 507:112-118.
-
(2012)
Gene
, vol.507
, pp. 112-118
-
-
Wu, X.1
Li, X.2
Li, L.3
Xu, X.4
-
178
-
-
84866925445
-
A unique tRNA gene family and a novel, highly expressed ORF in the mitochondrial genome of the silver-lip pearl oyster, Pinctada maxima (Bivalvia: Pteriidae)
-
Wu X, Li X, Li L, Yu Z. 2012. A unique tRNA gene family and a novel, highly expressed ORF in the mitochondrial genome of the silver-lip pearl oyster, Pinctada maxima (Bivalvia: Pteriidae). Gene 510:22-31.
-
(2012)
Gene
, vol.510
, pp. 22-31
-
-
Wu, X.1
Li, X.2
Li, L.3
Yu, Z.4
-
179
-
-
84887238210
-
Evolution of the tRNA gene family in mitochondrial genomes of five Meretrix clams (Bivalvia, Veneridae)
-
Wu X, et al. 2014. Evolution of the tRNA gene family in mitochondrial genomes of five Meretrix clams (Bivalvia, Veneridae). Gene 533:439-446.
-
(2014)
Gene
, vol.533
, pp. 439-446
-
-
Wu, X.1
-
180
-
-
77049122004
-
Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets
-
Wu X, Xu X, Yu Z, Kong X. 2009. Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets. BMC Research Notes 2:69.
-
(2009)
BMC Research Notes
, vol.2
, pp. 69
-
-
Wu, X.1
Xu, X.2
Yu, Z.3
Kong, X.4
-
181
-
-
33748969002
-
The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes
-
Xu W, Jameson D, Tang B, Higgs PG. 2006. The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes. J Mol Evol. 63:375-392.
-
(2006)
J Mol Evol
, vol.63
, pp. 375-392
-
-
Xu, W.1
Jameson, D.2
Tang, B.3
Higgs, P.G.4
-
182
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13:555-556.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
183
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
184
-
-
0642309746
-
GapCoder automates the use of indel characters in phylogenetic analysis
-
Young ND, Healy J. 2003. GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4:6.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 6
-
-
Young, N.D.1
Healy, J.2
-
185
-
-
84922480540
-
Mitogenomics of recombinant mitochondrial genomes of Baltic Sea Mytilus mussels
-
Zbawicka M, Wenne R, Burzyński A. 2014. Mitogenomics of recombinant mitochondrial genomes of Baltic Sea Mytilus mussels. Mol Genet Genomics 289:1275-1287.
-
(2014)
Mol Genet Genomics
, vol.289
, pp. 1275-1287
-
-
Zbawicka, M.1
Wenne, R.2
Burzyński, A.3
-
188
-
-
84874363042
-
Biparental inheritance through uniparental transmission: The doubly uniparental inheritance (DUI) of mitochondrial DNA
-
Zouros E. 2013. Biparental inheritance through uniparental transmission: the doubly uniparental inheritance (DUI) of mitochondrial DNA. Evol Biol. 40:1-31.
-
(2013)
Evol Biol
, vol.40
, pp. 1-31
-
-
Zouros, E.1
|