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Volumn 557, Issue 1, 2015, Pages 61-70

The complete mitochondrial DNA of Tegillarca granosa and comparative mitogenomic analyses of three Arcidae species

Author keywords

Arcidae; Comparative analysis; Mitochondrial genome; Phylogenetic relationships

Indexed keywords

GENOMIC DNA; MITOCHONDRIAL DNA; PROTEIN; RIBOSOME RNA; TRANSFER RNA; UNTRANSLATED RNA;

EID: 84920162456     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.12.011     Document Type: Article
Times cited : (20)

References (69)
  • 1
    • 77956287134 scopus 로고    scopus 로고
    • Generation, annotation, and analysis of ESTs from hemocyte of the bloody clam, Tegillarca granosa
    • Bao Y., Lin Z. Generation, annotation, and analysis of ESTs from hemocyte of the bloody clam, Tegillarca granosa. Fish Shellfish Immunol. 2010, 29:740-746.
    • (2010) Fish Shellfish Immunol. , vol.29 , pp. 740-746
    • Bao, Y.1    Lin, Z.2
  • 2
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 3
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J. Animal mitochondrial genomes. Nucleic Acids Res. 1999, 27:1767-1780.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.1
  • 4
    • 0024351697 scopus 로고
    • Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy
    • Boyce T.M., Zwick M.E., Aquadro C.F. Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy. Genetics 1989, 123:825-836.
    • (1989) Genetics , vol.123 , pp. 825-836
    • Boyce, T.M.1    Zwick, M.E.2    Aquadro, C.F.3
  • 5
    • 34547870541 scopus 로고    scopus 로고
    • The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?
    • Breton S., Beaupré H.D., Stewart D.T., Hoeh W.R., Blier P.U. The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?. Trends Genet. 2007, 23:465-474.
    • (2007) Trends Genet. , vol.23 , pp. 465-474
    • Breton, S.1    Beaupré, H.D.2    Stewart, D.T.3    Hoeh, W.R.4    Blier, P.U.5
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 7
    • 70349120372 scopus 로고    scopus 로고
    • Neogastropod phylogenetic relationships based on entire mitochondrial genomes
    • Cunha R.L., Grande C., Zardoya R. Neogastropod phylogenetic relationships based on entire mitochondrial genomes. BMC Evol. Biol. 2009, 9:210.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 210
    • Cunha, R.L.1    Grande, C.2    Zardoya, R.3
  • 8
    • 33748912955 scopus 로고    scopus 로고
    • The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica-and the first record for a putative Atpase subunit 8 gene in marine bivalves
    • Dreyer H., Steiner G. The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica-and the first record for a putative Atpase subunit 8 gene in marine bivalves. Front. Zool. 2006, 3:13.
    • (2006) Front. Zool. , vol.3 , pp. 13
    • Dreyer, H.1    Steiner, G.2
  • 9
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 10
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated profile HMM searches
    • Eddy S.R. Accelerated profile HMM searches. PLoS Comput. Biol. 2011, 7:e1002195.
    • (2011) PLoS Comput. Biol. , vol.7 , pp. e1002195
    • Eddy, S.R.1
  • 11
    • 23944490624 scopus 로고    scopus 로고
    • Novel repetitive structures, deviant protein-encoding sequences and unidentified ORFs in the mitochondrial genome of the brachiopod Lingula anatina
    • Endo K., Noguchi Y., Ueshima R., Jacobs H.T. Novel repetitive structures, deviant protein-encoding sequences and unidentified ORFs in the mitochondrial genome of the brachiopod Lingula anatina. J. Mol. Evol. 2005, 61:36-53.
    • (2005) J. Mol. Evol. , vol.61 , pp. 36-53
    • Endo, K.1    Noguchi, Y.2    Ueshima, R.3    Jacobs, H.T.4
  • 12
    • 79954537861 scopus 로고    scopus 로고
    • COI-based DNA barcoding of Arcoida species (Bivalvia: Pteriomorphia) along the coast of China
    • Feng Y.W., Li Q., Kong L.F., Zheng X.D. COI-based DNA barcoding of Arcoida species (Bivalvia: Pteriomorphia) along the coast of China. Mol. Ecol. Resour. 2011, 11:435-441.
    • (2011) Mol. Ecol. Resour. , vol.11 , pp. 435-441
    • Feng, Y.W.1    Li, Q.2    Kong, L.F.3    Zheng, X.D.4
  • 13
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: interactive sequence similarity searching
    • Finn R.D., Clements J., Eddy S.R. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011, 39:29-37.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 29-37
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 14
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O., Black M., Hoeh W., Lutz R., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
    • (1994) Mol. Mar. Biol. Biotechnol. , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 15
    • 0031014101 scopus 로고    scopus 로고
    • Characteristics and distribution of large tandem duplications in brook stickleback Culaea inconstants mitochondrial DNA
    • Gach M.H., Brown W.M. Characteristics and distribution of large tandem duplications in brook stickleback Culaea inconstants mitochondrial DNA. Genetics 1997, 145:383-394.
    • (1997) Genetics , vol.145 , pp. 383-394
    • Gach, M.H.1    Brown, W.M.2
  • 16
    • 84891654512 scopus 로고    scopus 로고
    • Structure, transcription, and variability of metazoan mitochondrial genome: perspectives from an unusual mitochondrial inheritance system
    • Ghiselli F., Milani L., Guerra D., Chang P.L., Breton S., Nuzhdin S.V., Passamonti M. Structure, transcription, and variability of metazoan mitochondrial genome: perspectives from an unusual mitochondrial inheritance system. Genome Biol. Evol. 2013, 5:1535-1554.
    • (2013) Genome Biol. Evol. , vol.5 , pp. 1535-1554
    • Ghiselli, F.1    Milani, L.2    Guerra, D.3    Chang, P.L.4    Breton, S.5    Nuzhdin, S.V.6    Passamonti, M.7
  • 17
    • 0006027055 scopus 로고
    • Extensive variation and heteroplasmy in size of mitochondrial DNA among geographic populations of Drosophila melanogaster
    • Hale L.R., Singh R.S. Extensive variation and heteroplasmy in size of mitochondrial DNA among geographic populations of Drosophila melanogaster. Proc. Natl. Acad. Sci. U. S. A. 1986, 83:8813-8817.
    • (1986) Proc. Natl. Acad. Sci. U. S. A. , vol.83 , pp. 8813-8817
    • Hale, L.R.1    Singh, R.S.2
  • 18
    • 0000207681 scopus 로고
    • TMbase-a database of membrane spanning proteins segments
    • Hofmann K., Stoffel W. TMbase-a database of membrane spanning proteins segments. Biol. Chem. Hoppe-Seyler 1993, 374:166.
    • (1993) Biol. Chem. Hoppe-Seyler , vol.374 , pp. 166
    • Hofmann, K.1    Stoffel, W.2
  • 19
    • 0025213141 scopus 로고
    • Recent appearance and molecular characterization of mitochondrial DNA deletions within a defined nematode pedigree
    • Hyman B.C., Slater T.M. Recent appearance and molecular characterization of mitochondrial DNA deletions within a defined nematode pedigree. Genetics 1990, 124:845-853.
    • (1990) Genetics , vol.124 , pp. 845-853
    • Hyman, B.C.1    Slater, T.M.2
  • 20
    • 0023739042 scopus 로고
    • Sequence amplification and gene rearrangement in parasitic nematode mitochondrial DNA
    • Hyman B.C., Beck J.L., Weiss K.C. Sequence amplification and gene rearrangement in parasitic nematode mitochondrial DNA. Genetics 1988, 120:707-712.
    • (1988) Genetics , vol.120 , pp. 707-712
    • Hyman, B.C.1    Beck, J.L.2    Weiss, K.C.3
  • 21
    • 2142657817 scopus 로고    scopus 로고
    • A combined transmembrane topology and signal peptide prediction method
    • Käll L., Krogh A., Sonnhammer E.L.L. A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 2004, 338:1027-1036.
    • (2004) J. Mol. Biol. , vol.338 , pp. 1027-1036
    • Käll, L.1    Krogh, A.2    Sonnhammer, E.L.L.3
  • 22
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K., Kuma K., Toh H., Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005, 33:511-518.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 23
    • 38349180130 scopus 로고    scopus 로고
    • ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
    • Laslett D., Canback B. ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics 2008, 24:172-175.
    • (2008) Bioinformatics , vol.24 , pp. 172-175
    • Laslett, D.1    Canback, B.2
  • 24
    • 0036967234 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite loci in the Pacific abalone, Haliotis discus hannai
    • Li Q., Park C., Kijima A. Isolation and characterization of microsatellite loci in the Pacific abalone, Haliotis discus hannai. J. Shellfish Res. 2002, 21:811-815.
    • (2002) J. Shellfish Res. , vol.21 , pp. 811-815
    • Li, Q.1    Park, C.2    Kijima, A.3
  • 25
    • 84872101760 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the ark shell Scapharca broughtonii: an ultra-large metazoan mitochondrial genome
    • Liu Y.G., Kurokawa T., Sekino M., Tanabe T., Watanabe K. Complete mitochondrial DNA sequence of the ark shell Scapharca broughtonii: an ultra-large metazoan mitochondrial genome. Comp. Biochem. Physiol. D Genomics Proteomics 2013, 8:72-81.
    • (2013) Comp. Biochem. Physiol. D Genomics Proteomics , vol.8 , pp. 72-81
    • Liu, Y.G.1    Kurokawa, T.2    Sekino, M.3    Tanabe, T.4    Watanabe, K.5
  • 26
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 27
    • 0032211421 scopus 로고    scopus 로고
    • Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology
    • Lunt D.H., Whipple L.E., Hyman B.C. Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology. Mol. Ecol. 1998, 7:1441-1455.
    • (1998) Mol. Ecol. , vol.7 , pp. 1441-1455
    • Lunt, D.H.1    Whipple, L.E.2    Hyman, B.C.3
  • 28
    • 0037767340 scopus 로고    scopus 로고
    • Phylogenetic analysis of the subclass Pteriomorphia (Bivalvia) from mtDNA COI sequences
    • Matsumoto M. Phylogenetic analysis of the subclass Pteriomorphia (Bivalvia) from mtDNA COI sequences. Mol. Phylogenet. Evol. 2003, 27:429-440.
    • (2003) Mol. Phylogenet. Evol. , vol.27 , pp. 429-440
    • Matsumoto, M.1
  • 29
    • 84862827665 scopus 로고    scopus 로고
    • Complete mitochondrial genome of Coelomactra antiquata (Mollusca: Bivalvia): the first representative from the family Mactridae with novel gene order and unusual tandem repeats
    • Meng X., Zhao N., Shen X., Hao J., Liang M., Zhu X., Cheng H.L., Yan B.L., Liu Z. Complete mitochondrial genome of Coelomactra antiquata (Mollusca: Bivalvia): the first representative from the family Mactridae with novel gene order and unusual tandem repeats. Comp. Biochem. Physiol. D Genomics Proteomics 2012, 7:175-179.
    • (2012) Comp. Biochem. Physiol. D Genomics Proteomics , vol.7 , pp. 175-179
    • Meng, X.1    Zhao, N.2    Shen, X.3    Hao, J.4    Liang, M.5    Zhu, X.6    Cheng, H.L.7    Yan, B.L.8    Liu, Z.9
  • 30
    • 0023005457 scopus 로고
    • Tandem duplication of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA
    • Moritz C., Brown W.M. Tandem duplication of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA. Science 1986, 233:1425-1427.
    • (1986) Science , vol.233 , pp. 1425-1427
    • Moritz, C.1    Brown, W.M.2
  • 31
    • 33751019957 scopus 로고    scopus 로고
    • The Arcoidea (Mollusca: Bivalvia): a review of the current phenetic-based systematics
    • Oliver P.G., Holmes A.M. The Arcoidea (Mollusca: Bivalvia): a review of the current phenetic-based systematics. Zool. J. Linnean Soc. 2006, 148:237-251.
    • (2006) Zool. J. Linnean Soc. , vol.148 , pp. 237-251
    • Oliver, P.G.1    Holmes, A.M.2
  • 32
    • 0035016876 scopus 로고    scopus 로고
    • Gender-associated mitochondrial DNA heteroplasmy in the venerid clam Tapes philippinarum (Mollusca Bivalvia)
    • Passamonti M., Scali V. Gender-associated mitochondrial DNA heteroplasmy in the venerid clam Tapes philippinarum (Mollusca Bivalvia). Curr. Genet. 2001, 39:117-124.
    • (2001) Curr. Genet. , vol.39 , pp. 117-124
    • Passamonti, M.1    Scali, V.2
  • 33
    • 0029049426 scopus 로고
    • Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
    • Perna N.T., Kocher T.D. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 1995, 41:353-358.
    • (1995) J. Mol. Evol. , vol.41 , pp. 353-358
    • Perna, N.T.1    Kocher, T.D.2
  • 34
    • 80055110730 scopus 로고    scopus 로고
    • A molecular phylogeny of bivalve mollusks: ancient radiations and divergences as revealed by mitochondrial genes
    • Plazzi F., Ceregato A., Taviani M., Passamonti M. A molecular phylogeny of bivalve mollusks: ancient radiations and divergences as revealed by mitochondrial genes. PLoS One 2011, 6:e27147.
    • (2011) PLoS One , vol.6 , pp. e27147
    • Plazzi, F.1    Ceregato, A.2    Taviani, M.3    Passamonti, M.4
  • 35
    • 67849103756 scopus 로고    scopus 로고
    • @TOME-2: a new pipeline for comparative modeling of protein-ligand complexes
    • Pons J.L., Labesse G. @TOME-2: a new pipeline for comparative modeling of protein-ligand complexes. Nucleic Acids Res. 2009, 37:W485-W491.
    • (2009) Nucleic Acids Res. , vol.37 , pp. W485-W491
    • Pons, J.L.1    Labesse, G.2
  • 36
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 37
    • 0022847444 scopus 로고
    • Large mitochondrial genome and mitochondrial DNA size polymorphism in the mosquito parasite, Romanomermis culicivorax
    • Powers T.O., Platzer E.G., Hyman B.C. Large mitochondrial genome and mitochondrial DNA size polymorphism in the mosquito parasite, Romanomermis culicivorax. Curr. Genet. 1986, 11:71-77.
    • (1986) Curr. Genet. , vol.11 , pp. 71-77
    • Powers, T.O.1    Platzer, E.G.2    Hyman, B.C.3
  • 38
    • 0027219130 scopus 로고
    • Endotherms, ectotherms, and mitochondrial genome-size variation
    • Rand D.M. Endotherms, ectotherms, and mitochondrial genome-size variation. J. Mol. Evol. 1993, 37:281-295.
    • (1993) J. Mol. Evol. , vol.37 , pp. 281-295
    • Rand, D.M.1
  • 39
    • 0344202238 scopus 로고
    • A tandem duplication in the mitochondrial DNA of the red shiner, Cyprinella lutrensis
    • Richardson L.R., Gold J.R. A tandem duplication in the mitochondrial DNA of the red shiner, Cyprinella lutrensis. Copeia 1991, 1991:842-845.
    • (1991) Copeia , vol.1991 , pp. 842-845
    • Richardson, L.R.1    Gold, J.R.2
  • 40
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 41
    • 0032860013 scopus 로고    scopus 로고
    • Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system
    • Saccone C., De Giorgi C., Gissi C., Pesole G., Reyes A. Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene 1999, 238:195-209.
    • (1999) Gene , vol.238 , pp. 195-209
    • Saccone, C.1    De Giorgi, C.2    Gissi, C.3    Pesole, G.4    Reyes, A.5
  • 42
    • 33746385832 scopus 로고    scopus 로고
    • Molecular mechanisms for the variation of mitochondrial gene content and gene arrangement among chigger mites of the genus Leptotrombidium (Acari: Acariformes)
    • Shao R., Barker S.C., Mitani H., Takahashi M., Fukunaga M. Molecular mechanisms for the variation of mitochondrial gene content and gene arrangement among chigger mites of the genus Leptotrombidium (Acari: Acariformes). J. Mol. Evol. 2006, 63:251-261.
    • (2006) J. Mol. Evol. , vol.63 , pp. 251-261
    • Shao, R.1    Barker, S.C.2    Mitani, H.3    Takahashi, M.4    Fukunaga, M.5
  • 44
    • 35748946010 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: evidence of transposition leading to an uncharacteristically large mitochondrial genome
    • Smith D.R., Snyder M. Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: evidence of transposition leading to an uncharacteristically large mitochondrial genome. J. Mol. Evol. 2007, 65:380-391.
    • (2007) J. Mol. Evol. , vol.65 , pp. 380-391
    • Smith, D.R.1    Snyder, M.2
  • 45
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst. Biol. 2008, 57:758-771.
    • (2008) Syst. Biol. , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 46
    • 0028300297 scopus 로고
    • Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA
    • Stanton D.J., Daehler L.L., Moritz C.C., Brown W.M. Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA. Genetics 1994, 137:233-241.
    • (1994) Genetics , vol.137 , pp. 233-241
    • Stanton, D.J.1    Daehler, L.L.2    Moritz, C.C.3    Brown, W.M.4
  • 47
    • 0034488352 scopus 로고    scopus 로고
    • Molecular phylogeny of the Bivalvia inferred from 18S rDNA sequences with particular reference to the Pteriomorphia
    • Steiner G., Hammer S. Molecular phylogeny of the Bivalvia inferred from 18S rDNA sequences with particular reference to the Pteriomorphia. Geol. Soc. Lond., Spec. Publ. 2000, 177:11-29.
    • (2000) Geol. Soc. Lond., Spec. Publ. , vol.177 , pp. 11-29
    • Steiner, G.1    Hammer, S.2
  • 48
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard P., Wishart D.S. Circular genome visualization and exploration using CGView. Bioinformatics 2005, 21:537-539.
    • (2005) Bioinformatics , vol.21 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 49
    • 84920139494 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Scapharca kagoshimensis (Bivalvia: Arcidae)
    • Sun S.E., Kong L.F., Yu H., Li Q. The complete mitochondrial genome of Scapharca kagoshimensis (Bivalvia: Arcidae). Mitochondrial DNA 2014, 1-2.
    • (2014) Mitochondrial DNA
    • Sun, S.E.1    Kong, L.F.2    Yu, H.3    Li, Q.4
  • 50
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera G., Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 2007, 56:564-577.
    • (2007) Syst. Biol. , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 51
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 52
    • 0028291246 scopus 로고
    • A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria
    • Valverde J.R., Marco R., Garesse R. A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria. Proc. Natl. Acad. Sci. U. S. A. 1994, 91:5368-5371.
    • (1994) Proc. Natl. Acad. Sci. U. S. A. , vol.91 , pp. 5368-5371
    • Valverde, J.R.1    Marco, R.2    Garesse, R.3
  • 53
    • 0002046410 scopus 로고    scopus 로고
    • Origin of the molluscan class Bivalvia and a phylogeny of major groups
    • University of Calgary Press, Calgary
    • Waller T.R. Origin of the molluscan class Bivalvia and a phylogeny of major groups. Bivalves, An Eon of Evolution 1998, 1-45. University of Calgary Press, Calgary.
    • (1998) Bivalves, An Eon of Evolution , pp. 1-45
    • Waller, T.R.1
  • 54
    • 84966167904 scopus 로고
    • Mitochondrial DNA insertion polymorphism and germ line heteroplasmy in the Triturus cristatus complex
    • Wallis G.P. Mitochondrial DNA insertion polymorphism and germ line heteroplasmy in the Triturus cristatus complex. Heredity 1986, 58:229-238.
    • (1986) Heredity , vol.58 , pp. 229-238
    • Wallis, G.P.1
  • 55
    • 78649905901 scopus 로고    scopus 로고
    • Complete mtDNA of the Meretrix lusoria (Bivalvia: Veneridae) reveals the presence of an atp8 gene, length variation and heteroplasmy in the control region
    • Wang H., Zhang S., Xiao G., Liu B. Complete mtDNA of the Meretrix lusoria (Bivalvia: Veneridae) reveals the presence of an atp8 gene, length variation and heteroplasmy in the control region. Comp. Biochem. Physiol. D Genomics Proteomics 2010, 5:256-264.
    • (2010) Comp. Biochem. Physiol. D Genomics Proteomics , vol.5 , pp. 256-264
    • Wang, H.1    Zhang, S.2    Xiao, G.3    Liu, B.4
  • 56
    • 84855976494 scopus 로고    scopus 로고
    • Complete mtDNA of the Meretrix lamarckii (Bivalvia: Veneridae) and molecular identification of suspected M. lamarckii based on the whole mitochondrial genome
    • Wang H., Zhang S., Xiao G., Liu B. Complete mtDNA of the Meretrix lamarckii (Bivalvia: Veneridae) and molecular identification of suspected M. lamarckii based on the whole mitochondrial genome. Mar. Genomics 2011, 4:263-271.
    • (2011) Mar. Genomics , vol.4 , pp. 263-271
    • Wang, H.1    Zhang, S.2    Xiao, G.3    Liu, B.4
  • 57
    • 0025899307 scopus 로고
    • Length and sequence variation in evening bat D-loop mtDNA
    • Wilkinson G.S., Chapman A.M. Length and sequence variation in evening bat D-loop mtDNA. Genetics 1991, 128:607-617.
    • (1991) Genetics , vol.128 , pp. 607-617
    • Wilkinson, G.S.1    Chapman, A.M.2
  • 58
    • 0030860660 scopus 로고    scopus 로고
    • Evolution of repeated sequence arrays in the D-Loop region of bat mitochondrial DNA
    • Wilkinson G.S., Mayer F., Kerth G., Petri B. Evolution of repeated sequence arrays in the D-Loop region of bat mitochondrial DNA. Genetics 1997, 146:1035-1048.
    • (1997) Genetics , vol.146 , pp. 1035-1048
    • Wilkinson, G.S.1    Mayer, F.2    Kerth, G.3    Petri, B.4
  • 59
    • 0027014050 scopus 로고
    • Genetic novelties in mitochondrial genomes of multicellular animals
    • Wolstenholme D.R. Genetic novelties in mitochondrial genomes of multicellular animals. Curr. Opin. Genet. Dev. 1992, 2:918-925.
    • (1992) Curr. Opin. Genet. Dev. , vol.2 , pp. 918-925
    • Wolstenholme, D.R.1
  • 60
    • 77956231683 scopus 로고    scopus 로고
    • Comparison of seven Crassostrea mitogenomes and phylogenetic analyses
    • Wu X.Y., Xu X.D., Yu Z.N., Wei Z.P., Xia J.J. Comparison of seven Crassostrea mitogenomes and phylogenetic analyses. Mol. Phylogenet. Evol. 2010, 57:448-454.
    • (2010) Mol. Phylogenet. Evol. , vol.57 , pp. 448-454
    • Wu, X.Y.1    Xu, X.D.2    Yu, Z.N.3    Wei, Z.P.4    Xia, J.J.5
  • 61
    • 84920180146 scopus 로고    scopus 로고
    • The mitochondrial genome of the scallop Mimachlamys senatoria (Bivalvia, Pectinidae)
    • Wu X.Y., Li X.L., Yu Z.N. The mitochondrial genome of the scallop Mimachlamys senatoria (Bivalvia, Pectinidae). Mitochondrial DNA 2013, 1-3.
    • (2013) Mitochondrial DNA
    • Wu, X.Y.1    Li, X.L.2    Yu, Z.N.3
  • 62
    • 80052446704 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence and phylogenetic analysis of Zhikong scallop Chlamys farreri (Bivalvia: Pectinidae)
    • Xu K.F., Kanno M., Yu H., Li Q., Kijima A. Complete mitochondrial DNA sequence and phylogenetic analysis of Zhikong scallop Chlamys farreri (Bivalvia: Pectinidae). Mol. Biol. Rep. 2011, 38:3067-3074.
    • (2011) Mol. Biol. Rep. , vol.38 , pp. 3067-3074
    • Xu, K.F.1    Kanno, M.2    Yu, H.3    Li, Q.4    Kijima, A.5
  • 63
    • 84856109239 scopus 로고    scopus 로고
    • Comparative studies of the complete mitochondrial genomes of four Paphia clams and reconsideration of subgenus Neotapes (Bivalvia: Veneridae)
    • Xu X.D., Wu X.Y., Yu Z.N. Comparative studies of the complete mitochondrial genomes of four Paphia clams and reconsideration of subgenus Neotapes (Bivalvia: Veneridae). Gene 2012, 494:17-23.
    • (2012) Gene , vol.494 , pp. 17-23
    • Xu, X.D.1    Wu, X.Y.2    Yu, Z.N.3
  • 64
    • 6344268961 scopus 로고    scopus 로고
    • Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes
    • Yokobori S.I., Fukuda N., Nakamura M., Aoyama T., Oshima T. Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes. Mol. Biol. Evol. 2004, 21:2034-2046.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 2034-2046
    • Yokobori, S.I.1    Fukuda, N.2    Nakamura, M.3    Aoyama, T.4    Oshima, T.5
  • 65
    • 55249108232 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis-a case of tandem duplication-random loss for genome rearrangement in Crassostrea?
    • Yu Z.N., Wei Z.P., Kong X.Y., Shi W. Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis-a case of tandem duplication-random loss for genome rearrangement in Crassostrea?. BMC Genomics 2008, 9:477.
    • (2008) BMC Genomics , vol.9 , pp. 477
    • Yu, Z.N.1    Wei, Z.P.2    Kong, X.Y.3    Shi, W.4
  • 66
    • 84863127092 scopus 로고    scopus 로고
    • The complete mitochondrial genomes of six heterodont bivalves (Tellinoidea and Solenoidea): variable gene arrangements and phylogenetic implications
    • Yuan Y., Li Q., Yu H., Kong L.F. The complete mitochondrial genomes of six heterodont bivalves (Tellinoidea and Solenoidea): variable gene arrangements and phylogenetic implications. PLoS ONE 2012, 7:e32353.
    • (2012) PLoS ONE , vol.7 , pp. e32353
    • Yuan, Y.1    Li, Q.2    Yu, H.3    Kong, L.F.4
  • 67
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan-an integration platform for the signature-recognition methods in InterPro
    • Zdobnov E.M., Apweiler R. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17:847-848.
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 68
    • 84874363042 scopus 로고    scopus 로고
    • Biparental inheritance through uniparental transmission: the doubly uniparental inheritance (DUI) of mitochondrial DNA
    • Zouros E. Biparental inheritance through uniparental transmission: the doubly uniparental inheritance (DUI) of mitochondrial DNA. Evol. Biol. 2013, 40:1-31.
    • (2013) Evol. Biol. , vol.40 , pp. 1-31
    • Zouros, E.1
  • 69
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31:3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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