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Volumn 25, Issue 5, 2017, Pages 1160-1175.e11

Pseudotemporal Ordering of Single Cells Reveals Metabolic Control of Postnatal β Cell Proliferation

Author keywords

amino acid metabolism; beta cell; catalase; mitochondrial; oxidative phosphorylation; proliferation; reactive oxygen species; single cell RNA seq; Srf; transcription factor

Indexed keywords

DEXTRO AMINO ACID; PROTEIN FOS; REACTIVE OXYGEN METABOLITE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR JUN; TRANSCRIPTION FACTOR SRF; TRANSCRIPTOME; UNCLASSIFIED DRUG; AMINO ACID;

EID: 85019003373     PISSN: 15504131     EISSN: 19327420     Source Type: Journal    
DOI: 10.1016/j.cmet.2017.04.014     Document Type: Article
Times cited : (113)

References (46)
  • 5
    • 84904517798 scopus 로고    scopus 로고
    • The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding gene expression
    • Benner, C., van der Meulen, T., Cacéres, E., Tigyi, K., Donaldson, C.J., Huising, M.O., The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding gene expression. BMC Genomics 15 (2014), 620–637.
    • (2014) BMC Genomics , vol.15 , pp. 620-637
    • Benner, C.1    van der Meulen, T.2    Cacéres, E.3    Tigyi, K.4    Donaldson, C.J.5    Huising, M.O.6
  • 6
    • 84857975722 scopus 로고    scopus 로고
    • Functional beta-cell maturation is marked by an increased glucose threshold and by expression of urocortin 3
    • Blum, B., Hrvatin, S.S., Schuetz, C., Bonal, C., Rezania, A., Melton, D.A., Functional beta-cell maturation is marked by an increased glucose threshold and by expression of urocortin 3. Nat. Biotechnol. 30 (2012), 261–264.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 261-264
    • Blum, B.1    Hrvatin, S.S.2    Schuetz, C.3    Bonal, C.4    Rezania, A.5    Melton, D.A.6
  • 7
    • 3242752786 scopus 로고    scopus 로고
    • Molecular events associated with reactive oxygen species and cell cycle progression in mammalian cells
    • Boonstra, J., Post, J.A., Molecular events associated with reactive oxygen species and cell cycle progression in mammalian cells. Gene 337 (2004), 1–13.
    • (2004) Gene , vol.337 , pp. 1-13
    • Boonstra, J.1    Post, J.A.2
  • 9
    • 84983310597 scopus 로고    scopus 로고
    • Laplacian eigenmaps and principal curves for high resolution pseudotemporal ordering of single-cell RNA-seq profiles
    • Campbell, K., Ponting, C.P., Webber, C., Laplacian eigenmaps and principal curves for high resolution pseudotemporal ordering of single-cell RNA-seq profiles. bioRxiv, 2015, 10.1101/027219.
    • (2015) bioRxiv
    • Campbell, K.1    Ponting, C.P.2    Webber, C.3
  • 10
  • 15
    • 0028987251 scopus 로고
    • Dynamics of beta-cell mass in the growing rat pancreas. Estimation with a simple mathematical model
    • Finegood, D.T., Scaglia, L., Bonner-Weir, S., Dynamics of beta-cell mass in the growing rat pancreas. Estimation with a simple mathematical model. Diabetes 44 (1995), 249–256.
    • (1995) Diabetes , vol.44 , pp. 249-256
    • Finegood, D.T.1    Scaglia, L.2    Bonner-Weir, S.3
  • 16
    • 9644266753 scopus 로고    scopus 로고
    • Beta cell replication is the primary mechanism for maintaining postnatal beta cell mass
    • Georgia, S., Bhushan, A., Beta cell replication is the primary mechanism for maintaining postnatal beta cell mass. J. Clin. Invest. 114 (2004), 963–968.
    • (2004) J. Clin. Invest. , vol.114 , pp. 963-968
    • Georgia, S.1    Bhushan, A.2
  • 17
    • 84864007651 scopus 로고    scopus 로고
    • Neonatal β cell development in mice and humans is regulated by calcineurin/NFAT
    • Goodyer, W.R., Gu, X., Liu, Y., Bottino, R., Crabtree, G.R., Kim, S.K., Neonatal β cell development in mice and humans is regulated by calcineurin/NFAT. Dev. Cell 23 (2012), 21–34.
    • (2012) Dev. Cell , vol.23 , pp. 21-34
    • Goodyer, W.R.1    Gu, X.2    Liu, Y.3    Bottino, R.4    Crabtree, G.R.5    Kim, S.K.6
  • 20
    • 0035875907 scopus 로고    scopus 로고
    • The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex
    • Hassler, M., Richmond, T.J., The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex. EMBO J. 20 (2001), 3018–3028.
    • (2001) EMBO J. , vol.20 , pp. 3018-3028
    • Hassler, M.1    Richmond, T.J.2
  • 22
    • 84982806105 scopus 로고    scopus 로고
    • TSCAN: pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis
    • Ji, Z., Ji, H., TSCAN: pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. Nucleic Acids Res., 44, 2016, e117.
    • (2016) Nucleic Acids Res. , vol.44 , pp. e117
    • Ji, Z.1    Ji, H.2
  • 26
    • 84925226706 scopus 로고    scopus 로고
    • svaseq: removing batch effects and other unwanted noise from sequencing data
    • Leek, J.T., svaseq: removing batch effects and other unwanted noise from sequencing data. Nucleic Acids Res., 42, 2014, e161.
    • (2014) Nucleic Acids Res. , vol.42 , pp. e161
    • Leek, J.T.1
  • 27
    • 78649335126 scopus 로고    scopus 로고
    • Conditional ablation of Gsk-3β in islet beta cells results in expanded mass and resistance to fat feeding-induced diabetes in mice
    • Liu, Y., Tanabe, K., Baronnier, D., Patel, S., Woodgett, J., Cras-Méneur, C., Permutt, M.A., Conditional ablation of Gsk-3β in islet beta cells results in expanded mass and resistance to fat feeding-induced diabetes in mice. Diabetologia 53 (2010), 2600–2610.
    • (2010) Diabetologia , vol.53 , pp. 2600-2610
    • Liu, Y.1    Tanabe, K.2    Baronnier, D.3    Patel, S.4    Woodgett, J.5    Cras-Méneur, C.6    Permutt, M.A.7
  • 29
    • 84937435734 scopus 로고    scopus 로고
    • Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells
    • Mina, M., Magi, S., Jurman, G., Itoh, M., Kawaji, H., Lassmann, T., Arner, E., Forrest, A.R., Carninci, P., Hayashizaki, Y., et al., FANTOM Consortium. Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells. Sci. Rep. 5 (2015), 11999–12012.
    • (2015) Sci. Rep. , vol.5 , pp. 11999-12012
    • Mina, M.1    Magi, S.2    Jurman, G.3    Itoh, M.4    Kawaji, H.5    Lassmann, T.6    Arner, E.7    Forrest, A.R.8    Carninci, P.9    Hayashizaki, Y.10
  • 30
    • 84864863010 scopus 로고    scopus 로고
    • Supporting regenerative medicine by integrative dimensionality reduction
    • Mulas, F., Zagar, L., Zupan, B., Bellazzi, R., Supporting regenerative medicine by integrative dimensionality reduction. Methods Inf. Med. 51 (2012), 341–347.
    • (2012) Methods Inf. Med. , vol.51 , pp. 341-347
    • Mulas, F.1    Zagar, L.2    Zupan, B.3    Bellazzi, R.4
  • 32
    • 0032937751 scopus 로고    scopus 로고
    • Loss of Cdk4 expression causes insulin-deficient diabetes and Cdk4 activation results in beta-islet cell hyperplasia
    • Rane, S.G., Dubus, P., Mettus, R.V., Galbreath, E.J., Boden, G., Reddy, E.P., Barbacid, M., Loss of Cdk4 expression causes insulin-deficient diabetes and Cdk4 activation results in beta-islet cell hyperplasia. Nat. Genet. 22 (1999), 44–52.
    • (1999) Nat. Genet. , vol.22 , pp. 44-52
    • Rane, S.G.1    Dubus, P.2    Mettus, R.V.3    Galbreath, E.J.4    Boden, G.5    Reddy, E.P.6    Barbacid, M.7
  • 34
    • 84983497196 scopus 로고    scopus 로고
    • Pseudotime estimation: deconfounding single cell time series
    • Reid, J.E., Wernisch, L., Pseudotime estimation: deconfounding single cell time series. Bioinformatics 32 (2016), 2973–2980.
    • (2016) Bioinformatics , vol.32 , pp. 2973-2980
    • Reid, J.E.1    Wernisch, L.2
  • 42
    • 84871276716 scopus 로고    scopus 로고
    • Urocortin 3 marks mature human primary and embryonic stem cell-derived pancreatic alpha and beta cells
    • van der Meulen, T., Xie, R., Kelly, O.G., Vale, W.W., Sander, M., Huising, M.O., Urocortin 3 marks mature human primary and embryonic stem cell-derived pancreatic alpha and beta cells. PLoS ONE, 7, 2012, e52181.
    • (2012) PLoS ONE , vol.7 , pp. e52181
    • van der Meulen, T.1    Xie, R.2    Kelly, O.G.3    Vale, W.W.4    Sander, M.5    Huising, M.O.6
  • 45
    • 84963644230 scopus 로고    scopus 로고
    • ERRγ is required for the metabolic maturation of therapeutically functional glucose-responsive β cells
    • Yoshihara, E., Wei, Z., Lin, C.S., Fang, S., Ahmadian, M., Kida, Y., Tseng, T., Dai, Y., Yu, R.T., Liddle, C., et al. ERRγ is required for the metabolic maturation of therapeutically functional glucose-responsive β cells. Cell Metab. 23 (2016), 622–634.
    • (2016) Cell Metab. , vol.23 , pp. 622-634
    • Yoshihara, E.1    Wei, Z.2    Lin, C.S.3    Fang, S.4    Ahmadian, M.5    Kida, Y.6    Tseng, T.7    Dai, Y.8    Yu, R.T.9    Liddle, C.10
  • 46
    • 80052741737 scopus 로고    scopus 로고
    • Stage prediction of embryonic stem cell differentiation from genome-wide expression data
    • Zagar, L., Mulas, F., Garagna, S., Zuccotti, M., Bellazzi, R., Zupan, B., Stage prediction of embryonic stem cell differentiation from genome-wide expression data. Bioinformatics 27 (2011), 2546–2553.
    • (2011) Bioinformatics , vol.27 , pp. 2546-2553
    • Zagar, L.1    Mulas, F.2    Garagna, S.3    Zuccotti, M.4    Bellazzi, R.5    Zupan, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.