메뉴 건너뛰기




Volumn 169, Issue 4, 2017, Pages 750-765.e17

Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses

(29)  Lavin, Yonit a   Kobayashi, Soma a   Leader, Andrew a   Amir, El ad David a   Elefant, Naama b   Bigenwald, Camille a   Remark, Romain a,e   Sweeney, Robert a   Becker, Christian D a   Levine, Jacob H c   Meinhof, Klaus a   Chow, Andrew a   Kim Shulze, Seunghee a   Wolf, Andrea a   Medaglia, Chiara b   Li, Hanjie b   Rytlewski, Julie A d   Emerson, Ryan O d   Solovyov, Alexander a   Greenbaum, Benjamin D a   more..


Author keywords

CD141+ DC; CD1c+ DC; human non small cell lung cancer (NSCLC); immune cell atlas; lung adenocarcinoma; NK Cell; T Cell; TIM; TLS; tumor macrophage

Indexed keywords

41BB ANTIGEN; APOLIPOPROTEIN E; CD14 ANTIGEN; CD141 PROTEIN; CD1C ANTIGEN; CD38 ANTIGEN; CD39 ANTIGEN; CD64 ANTIGEN; CHEMOKINE RECEPTOR CCR4; CSF1 R PROTEIN; CSF2 R PROTEIN; CYTOTOXIC T LYMPHOCYTE ANTIGEN 4; GAMMA INTERFERON; GLYCOPROTEIN P 15095; GRANZYME B; HLA DR ANTIGEN; ICOS PROTEIN; INTERLEUKIN 1BETA; INTERLEUKIN 6; INTERLEUKIN 8; PD 1 ANTIGEN; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; PROTEIN; TETRASPANIN; TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS 2; UNCLASSIFIED DRUG;

EID: 85018766073     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2017.04.014     Document Type: Article
Times cited : (902)

References (70)
  • 3
    • 85009840975 scopus 로고    scopus 로고
    • 16LBA Phase II, single-arm trial (BIRCH) of atezolizumab as first-line or subsequent therapy for locally advanced or metastatic PD-L1-selected non-small cell lung cancer (NSCLC)
    • Besse, B., Johnson, M., Janne, P.A., Janne, P.A., Garassino, M.C., Eberhardt, W.E., Peters, S., Toh, C.K., Kurata, T., Li, Z., et al. 16LBA Phase II, single-arm trial (BIRCH) of atezolizumab as first-line or subsequent therapy for locally advanced or metastatic PD-L1-selected non-small cell lung cancer (NSCLC). Eur. J. Cancer 51 (2015), S717–S718.
    • (2015) Eur. J. Cancer , vol.51 , pp. S717-S718
    • Besse, B.1    Johnson, M.2    Janne, P.A.3    Janne, P.A.4    Garassino, M.C.5    Eberhardt, W.E.6    Peters, S.7    Toh, C.K.8    Kurata, T.9    Li, Z.10
  • 4
    • 84921478911 scopus 로고    scopus 로고
    • Cost-effectiveness of CT screening in the National Lung Screening Trial
    • Black, W.C., Keeler, E.B., Soneji, S.S., Cost-effectiveness of CT screening in the National Lung Screening Trial. N. Engl. J. Med., 372, 2015, 388.
    • (2015) N. Engl. J. Med. , vol.372 , pp. 388
    • Black, W.C.1    Keeler, E.B.2    Soneji, S.S.3
  • 9
    • 0037314662 scopus 로고    scopus 로고
    • Up-regulation of tumor interleukin-8 expression by infiltrating macrophages: its correlation with tumor angiogenesis and patient survival in non-small cell lung cancer
    • Chen, J.J., Yao, P.L., Yuan, A., Hong, T.M., Shun, C.T., Kuo, M.L., Lee, Y.C., Yang, P.C., Up-regulation of tumor interleukin-8 expression by infiltrating macrophages: its correlation with tumor angiogenesis and patient survival in non-small cell lung cancer. Clin. Cancer Res. 9 (2003), 729–737.
    • (2003) Clin. Cancer Res. , vol.9 , pp. 729-737
    • Chen, J.J.1    Yao, P.L.2    Yuan, A.3    Hong, T.M.4    Shun, C.T.5    Kuo, M.L.6    Lee, Y.C.7    Yang, P.C.8
  • 10
    • 84906912010 scopus 로고    scopus 로고
    • Cytobank: providing an analytics platform for community cytometry data analysis and collaboration
    • H.G. Fienberg G.P. Nolan Springer
    • Chen, T.J., Kotecha, N., Cytobank: providing an analytics platform for community cytometry data analysis and collaboration. Fienberg, H.G., Nolan, G.P., (eds.) High-Dimensional Single Cell Analysis, 2014, Springer, 127–157.
    • (2014) High-Dimensional Single Cell Analysis , pp. 127-157
    • Chen, T.J.1    Kotecha, N.2
  • 11
    • 43349094507 scopus 로고    scopus 로고
    • The igraph software package for complex network research
    • Csardi, G., Nepusz, T., The igraph software package for complex network research. InterJournal. Complex Syst. 1695 (2006), 1–9.
    • (2006) InterJournal. Complex Syst. , vol.1695 , pp. 1-9
    • Csardi, G.1    Nepusz, T.2
  • 14
    • 84908237777 scopus 로고    scopus 로고
    • Aligning bona fide dendritic cell populations across species
    • Dutertre, C.A., Wang, L.F., Ginhoux, F., Aligning bona fide dendritic cell populations across species. Cell. Immunol. 291 (2014), 3–10.
    • (2014) Cell. Immunol. , vol.291 , pp. 3-10
    • Dutertre, C.A.1    Wang, L.F.2    Ginhoux, F.3
  • 15
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar, R., Domrachev, M., Lash, A.E., Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30 (2002), 207–210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 16
    • 84976272206 scopus 로고    scopus 로고
    • The role of myeloid cells in cancer therapies
    • Engblom, C., Pfirschke, C., Pittet, M.J., The role of myeloid cells in cancer therapies. Nat. Rev. Cancer 16 (2016), 447–462.
    • (2016) Nat. Rev. Cancer , vol.16 , pp. 447-462
    • Engblom, C.1    Pfirschke, C.2    Pittet, M.J.3
  • 17
    • 84962038946 scopus 로고    scopus 로고
    • Atezolizumab versus docetaxel for patients with previously treated non-small-cell lung cancer (POPLAR): a multicentre, open-label, phase 2 randomised controlled trial
    • Fehrenbacher, L., Spira, A., Ballinger, M., Kowanetz, M., Vansteenkiste, J., Mazieres, J., Park, K., Smith, D., Artal-Cortes, A., Lewanski, C., et al., POPLAR Study Group. Atezolizumab versus docetaxel for patients with previously treated non-small-cell lung cancer (POPLAR): a multicentre, open-label, phase 2 randomised controlled trial. Lancet 387 (2016), 1837–1846.
    • (2016) Lancet , vol.387 , pp. 1837-1846
    • Fehrenbacher, L.1    Spira, A.2    Ballinger, M.3    Kowanetz, M.4    Vansteenkiste, J.5    Mazieres, J.6    Park, K.7    Smith, D.8    Artal-Cortes, A.9    Lewanski, C.10
  • 21
    • 84901358607 scopus 로고    scopus 로고
    • Monocytes and macrophages: developmental pathways and tissue homeostasis
    • Ginhoux, F., Jung, S., Monocytes and macrophages: developmental pathways and tissue homeostasis. Nat. Rev. Immunol. 14 (2014), 392–404.
    • (2014) Nat. Rev. Immunol. , vol.14 , pp. 392-404
    • Ginhoux, F.1    Jung, S.2
  • 22
    • 84893851804 scopus 로고    scopus 로고
    • Dendritic cells in tumor-associated tertiary lymphoid structures signal a Th1 cytotoxic immune contexture and license the positive prognostic value of infiltrating CD8+ T cells
    • Goc, J., Germain, C., Vo-Bourgais, T.K., Lupo, A., Klein, C., Knockaert, S., de Chaisemartin, L., Ouakrim, H., Becht, E., Alifano, M., et al. Dendritic cells in tumor-associated tertiary lymphoid structures signal a Th1 cytotoxic immune contexture and license the positive prognostic value of infiltrating CD8+ T cells. Cancer Res. 74 (2014), 705–715.
    • (2014) Cancer Res. , vol.74 , pp. 705-715
    • Goc, J.1    Germain, C.2    Vo-Bourgais, T.K.3    Lupo, A.4    Klein, C.5    Knockaert, S.6    de Chaisemartin, L.7    Ouakrim, H.8    Becht, E.9    Alifano, M.10
  • 23
    • 84959324583 scopus 로고    scopus 로고
    • The IASLC Lung Cancer Staging Project: Proposals for revision of the TNM stage groupings in the forthcoming (eighth) edition of the TNM classification for lung cancer
    • Goldstraw, P., Chansky, K., Crowley, J., Rami-Porta, R., Asamura, H., Eberhardt, W.E.E., Nicholson, A.G., Groome, P., Mitchell, A., Bolejack, V. International Association for the Study of Lung Cancer Staging and Prognostic Factors Committee, Advisory Boards, and Participating Institutions, International Association for the Study of Lung Cancer Staging and Prognostic Factors Committee Advisory Boards and Participating Institutions. The IASLC Lung Cancer Staging Project: Proposals for revision of the TNM stage groupings in the forthcoming (eighth) edition of the TNM classification for lung cancer. J. Thorac. Oncol. 11 (2016), 39–51.
    • (2016) J. Thorac. Oncol. , vol.11 , pp. 39-51
    • Goldstraw, P.1    Chansky, K.2    Crowley, J.3    Rami-Porta, R.4    Asamura, H.5    Eberhardt, W.E.E.6    Nicholson, A.G.7    Groome, P.8    Mitchell, A.9    Bolejack, V.10
  • 24
    • 84884406339 scopus 로고    scopus 로고
    • Ontogeny and functional specialization of dendritic cells in human and mouse
    • Haniffa, M., Collin, M., Ginhoux, F., Ontogeny and functional specialization of dendritic cells in human and mouse. Adv. Immunol. 120 (2013), 1–49.
    • (2013) Adv. Immunol. , vol.120 , pp. 1-49
    • Haniffa, M.1    Collin, M.2    Ginhoux, F.3
  • 30
    • 84952637397 scopus 로고    scopus 로고
    • T-cell receptor profiling in cancer
    • Kirsch, I., Vignali, M., Robins, H., T-cell receptor profiling in cancer. Mol. Oncol. 9 (2015), 2063–2070.
    • (2015) Mol. Oncol. , vol.9 , pp. 2063-2070
    • Kirsch, I.1    Vignali, M.2    Robins, H.3
  • 31
    • 85018762073 scopus 로고    scopus 로고
    • (2015). Rtsne: T-Distributed stochastic neighbor embedding using Barnes-Hut implementation. R package version 010, URL.
    • Krijthe, J. (2015). Rtsne: T-Distributed stochastic neighbor embedding using Barnes-Hut implementation. R package version 010, URL http://CRAN.R-project.org/package=Rtsne.
    • Krijthe, J.1
  • 32
    • 85003048311 scopus 로고    scopus 로고
    • Macrophages: gatekeepers of tissue integrity
    • Lavin, Y., Merad, M., Macrophages: gatekeepers of tissue integrity. Cancer Immunol. Res. 1 (2013), 201–209.
    • (2013) Cancer Immunol. Res. , vol.1 , pp. 201-209
    • Lavin, Y.1    Merad, M.2
  • 33
    • 84920724791 scopus 로고    scopus 로고
    • Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment
    • Lavin, Y., Winter, D., Blecher-Gonen, R., David, E., Keren-Shaul, H., Merad, M., Jung, S., Amit, I., Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment. Cell 159 (2014), 1312–1326.
    • (2014) Cell , vol.159 , pp. 1312-1326
    • Lavin, Y.1    Winter, D.2    Blecher-Gonen, R.3    David, E.4    Keren-Shaul, H.5    Merad, M.6    Jung, S.7    Amit, I.8
  • 35
    • 84875528275 scopus 로고    scopus 로고
    • The dendritic cell lineage: ontogeny and function of dendritic cells and their subsets in the steady state and the inflamed setting
    • Merad, M., Sathe, P., Helft, J., Miller, J., Mortha, A., The dendritic cell lineage: ontogeny and function of dendritic cells and their subsets in the steady state and the inflamed setting. Annu. Rev. Immunol. 31 (2013), 563–604.
    • (2013) Annu. Rev. Immunol. , vol.31 , pp. 563-604
    • Merad, M.1    Sathe, P.2    Helft, J.3    Miller, J.4    Mortha, A.5
  • 36
    • 81855203183 scopus 로고    scopus 로고
    • Dendritic cells control lymphocyte entry to lymph nodes through high endothelial venules
    • Moussion, C., Girard, J.P., Dendritic cells control lymphocyte entry to lymph nodes through high endothelial venules. Nature 479 (2011), 542–546.
    • (2011) Nature , vol.479 , pp. 542-546
    • Moussion, C.1    Girard, J.P.2
  • 38
    • 85013156149 scopus 로고    scopus 로고
    • Incidence of programmed cell death 1 inhibitor–related pneumonitis in patients with advanced cancer: A systematic review and meta-analysis
    • Nishino, M., Giobbie-Hurder, A., Hatabu, H., Ramaiya, N.H., Hodi, F.S., Incidence of programmed cell death 1 inhibitor–related pneumonitis in patients with advanced cancer: A systematic review and meta-analysis. JAMA Oncol. 2 (2016), 1607–1616.
    • (2016) JAMA Oncol. , vol.2 , pp. 1607-1616
    • Nishino, M.1    Giobbie-Hurder, A.2    Hatabu, H.3    Ramaiya, N.H.4    Hodi, F.S.5
  • 40
    • 33745559712 scopus 로고    scopus 로고
    • Neutrophil serine proteases: specific regulators of inflammation
    • Pham, C.T., Neutrophil serine proteases: specific regulators of inflammation. Nat. Rev. Immunol. 6 (2006), 541–550.
    • (2006) Nat. Rev. Immunol. , vol.6 , pp. 541-550
    • Pham, C.T.1
  • 42
    • 84903376485 scopus 로고    scopus 로고
    • Ectopic lymphoid-like structures in infection, cancer and autoimmunity
    • Pitzalis, C., Jones, G.W., Bombardieri, M., Jones, S.A., Ectopic lymphoid-like structures in infection, cancer and autoimmunity. Nat. Rev. Immunol. 14 (2014), 447–462.
    • (2014) Nat. Rev. Immunol. , vol.14 , pp. 447-462
    • Pitzalis, C.1    Jones, G.W.2    Bombardieri, M.3    Jones, S.A.4
  • 44
    • 84975753826 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • R Foundation for Statistical Computing
    • R Core Team. R: A language and environment for statistical computing. 2016, R Foundation for Statistical Computing.
    • (2016)
  • 45
    • 70349239310 scopus 로고    scopus 로고
    • Immunomodulatory role of PPAR-γ in alveolar macrophages
    • Reddy, R.C., Immunomodulatory role of PPAR-γ in alveolar macrophages. J. Investig. Med. 56 (2008), 522–527.
    • (2008) J. Investig. Med. , vol.56 , pp. 522-527
    • Reddy, R.C.1
  • 47
    • 0031886864 scopus 로고    scopus 로고
    • The peroxisome proliferator-activated receptor-gamma is a negative regulator of macrophage activation
    • Ricote, M., Li, A.C., Willson, T.M., Kelly, C.J., Glass, C.K., The peroxisome proliferator-activated receptor-gamma is a negative regulator of macrophage activation. Nature 391 (1998), 79–82.
    • (1998) Nature , vol.391 , pp. 79-82
    • Ricote, M.1    Li, A.C.2    Willson, T.M.3    Kelly, C.J.4    Glass, C.K.5
  • 48
    • 84926507971 scopus 로고    scopus 로고
    • limma powers differential expression analyses for RNA-sequencing and microarray studies
    • Ritchie, M.E., Phipson, B., Wu, D., Hu, Y., Law, C.W., Shi, W., Smyth, G.K., limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res., 43, 2015, e47.
    • (2015) Nucleic Acids Res. , vol.43 , pp. e47
    • Ritchie, M.E.1    Phipson, B.2    Wu, D.3    Hu, Y.4    Law, C.W.5    Shi, W.6    Smyth, G.K.7
  • 52
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson, M.D., Oshlack, A., A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol., 11, 2010, R25.
    • (2010) Genome Biol. , vol.11 , pp. R25
    • Robinson, M.D.1    Oshlack, A.2
  • 54
    • 84964344569 scopus 로고    scopus 로고
    • Expansion and activation of CD103(+) dendritic cell progenitors at the tumor site enhances tumor responses to therapeutic PD-L1 and BRAF inhibition
    • Salmon, H., Idoyaga, J., Rahman, A., Leboeuf, M., Remark, R., Jordan, S., Casanova-Acebes, M., Khudoynazarova, M., Agudo, J., Tung, N., et al. Expansion and activation of CD103(+) dendritic cell progenitors at the tumor site enhances tumor responses to therapeutic PD-L1 and BRAF inhibition. Immunity 44 (2016), 924–938.
    • (2016) Immunity , vol.44 , pp. 924-938
    • Salmon, H.1    Idoyaga, J.2    Rahman, A.3    Leboeuf, M.4    Remark, R.5    Jordan, S.6    Casanova-Acebes, M.7    Khudoynazarova, M.8    Agudo, J.9    Tung, N.10
  • 57
    • 84874792010 scopus 로고    scopus 로고
    • Clinical impact of immune microenvironment in stage I lung adenocarcinoma: tumor interleukin-12 receptor β2 (IL-12Rβ2), IL-7R, and stromal FoxP3/CD3 ratio are independent predictors of recurrence
    • Suzuki, K., Kadota, K., Sima, C.S., Nitadori, J., Rusch, V.W., Travis, W.D., Sadelain, M., Adusumilli, P.S., Clinical impact of immune microenvironment in stage I lung adenocarcinoma: tumor interleukin-12 receptor β2 (IL-12Rβ2), IL-7R, and stromal FoxP3/CD3 ratio are independent predictors of recurrence. J. Clin. Oncol. 31 (2013), 490–498.
    • (2013) J. Clin. Oncol. , vol.31 , pp. 490-498
    • Suzuki, K.1    Kadota, K.2    Sima, C.S.3    Nitadori, J.4    Rusch, V.W.5    Travis, W.D.6    Sadelain, M.7    Adusumilli, P.S.8
  • 58
    • 84945451852 scopus 로고    scopus 로고
    • Immunological hallmarks of stromal cells in the tumour microenvironment
    • Turley, S.J., Cremasco, V., Astarita, J.L., Immunological hallmarks of stromal cells in the tumour microenvironment. Nat. Rev. Immunol. 15 (2015), 669–682.
    • (2015) Nat. Rev. Immunol. , vol.15 , pp. 669-682
    • Turley, S.J.1    Cremasco, V.2    Astarita, J.L.3
  • 59
    • 84919775831 scopus 로고    scopus 로고
    • Accelerating t-SNE using tree-based algorithms
    • van der Maaten, L., Accelerating t-SNE using tree-based algorithms. J. Mach. Learn. Res. 15 (2014), 3221–3245.
    • (2014) J. Mach. Learn. Res. , vol.15 , pp. 3221-3245
    • van der Maaten, L.1
  • 61
    • 54249133961 scopus 로고    scopus 로고
    • Natural killer cell accumulation in tumors is dependent on IFN-gamma and CXCR3 ligands
    • Wendel, M., Galani, I.E., Suri-Payer, E., Cerwenka, A., Natural killer cell accumulation in tumors is dependent on IFN-gamma and CXCR3 ligands. Cancer Res. 68 (2008), 8437–8445.
    • (2008) Cancer Res. , vol.68 , pp. 8437-8445
    • Wendel, M.1    Galani, I.E.2    Suri-Payer, E.3    Cerwenka, A.4
  • 62
    • 77749296886 scopus 로고    scopus 로고
    • ggplot2: Elegant Graphics for Data Analysis
    • Springer-Verlag New York
    • Wickham, H., ggplot2: Elegant Graphics for Data Analysis. 2009, Springer-Verlag New York.
    • (2009)
    • Wickham, H.1
  • 63
    • 85018772685 scopus 로고    scopus 로고
    • (2016). tidyverse: Easily Install and Load 'Tidyverse' Packages. R package version 1.0.0.
    • Wickham, H. (2016). tidyverse: Easily Install and Load 'Tidyverse' Packages. R package version 1.0.0.
    • Wickham, H.1
  • 65
    • 73849152201 scopus 로고    scopus 로고
    • Monocytes: subsets, origins, fates and functions
    • Yona, S., Jung, S., Monocytes: subsets, origins, fates and functions. Curr. Opin. Hematol. 17 (2010), 53–59.
    • (2010) Curr. Opin. Hematol. , vol.17 , pp. 53-59
    • Yona, S.1    Jung, S.2
  • 66
    • 84922475661 scopus 로고    scopus 로고
    • CCR4 and its ligands: from bench to bedside
    • Yoshie, O., Matsushima, K., CCR4 and its ligands: from bench to bedside. Int. Immunol. 27 (2015), 11–20.
    • (2015) Int. Immunol. , vol.27 , pp. 11-20
    • Yoshie, O.1    Matsushima, K.2
  • 67
    • 84908161000 scopus 로고    scopus 로고
    • Revisiting STAT3 signalling in cancer: new and unexpected biological functions
    • Yu, H., Lee, H., Herrmann, A., Buettner, R., Jove, R., Revisiting STAT3 signalling in cancer: new and unexpected biological functions. Nat. Rev. Cancer 14 (2014), 736–746.
    • (2014) Nat. Rev. Cancer , vol.14 , pp. 736-746
    • Yu, H.1    Lee, H.2    Herrmann, A.3    Buettner, R.4    Jove, R.5
  • 69
    • 84944548558 scopus 로고    scopus 로고
    • A high density of tertiary lymphoid structure B cells in lung tumors is associated with increased CD4(+) T cell receptor repertoire clonality
    • Zhu, W., Germain, C., Liu, Z., Sebastian, Y., Devi, P., Knockaert, S., Brohawn, P., Lehmann, K., Damotte, D., Validire, P., et al. A high density of tertiary lymphoid structure B cells in lung tumors is associated with increased CD4(+) T cell receptor repertoire clonality. OncoImmunology, 4, 2015, e1051922.
    • (2015) OncoImmunology , vol.4 , pp. e1051922
    • Zhu, W.1    Germain, C.2    Liu, Z.3    Sebastian, Y.4    Devi, P.5    Knockaert, S.6    Brohawn, P.7    Lehmann, K.8    Damotte, D.9    Validire, P.10
  • 70
    • 11244328119 scopus 로고    scopus 로고
    • Interleukin-8/CXCL8 is a growth factor for human lung cancer cells
    • Zhu, Y.M., Webster, S.J., Flower, D., Woll, P.J., Interleukin-8/CXCL8 is a growth factor for human lung cancer cells. Br. J. Cancer 91 (2004), 1970–1976.
    • (2004) Br. J. Cancer , vol.91 , pp. 1970-1976
    • Zhu, Y.M.1    Webster, S.J.2    Flower, D.3    Woll, P.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.