-
1
-
-
0037320451
-
TICAM-1, an adaptor molecule that participates in Toll-like receptor 3-mediated interferon-beta induction
-
Oshiumi H, Matsumoto M, Funami K, Akazawa T, Seya T. TICAM-1, an adaptor molecule that participates in Toll-like receptor 3-mediated interferon-beta induction. Nat Immunol [Internet]. 2003;4:161-7. Available from: http://www.ncbi.nlm.nih.gov/pubmed/12539043.
-
(2003)
Nat Immunol [Internet]
, vol.4
, pp. 161-167
-
-
Oshiumi, H.1
Matsumoto, M.2
Funami, K.3
Akazawa, T.4
Seya, T.5
-
2
-
-
0037114185
-
Cutting edge: a novel Toll/IL-1 receptor domain-containing adapter that preferentially activates the IFN-beta promoter in the Toll-like receptor signaling
-
Yamamoto M, Sato S, Mori K, Hoshino K, Takeuchi O, Takeda K, et al. Cutting edge: a novel Toll/IL-1 receptor domain-containing adapter that preferentially activates the IFN-beta promoter in the Toll-like receptor signaling. J Immunol. 2002;169:6668-72.
-
(2002)
J Immunol
, vol.169
, pp. 6668-6672
-
-
Yamamoto, M.1
Sato, S.2
Mori, K.3
Hoshino, K.4
Takeuchi, O.5
Takeda, K.6
-
3
-
-
77951260924
-
The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors
-
Kawai T, Akira S. The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors. Nat Immunol [Internet]. 2010;11:373-84. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20404851.
-
(2010)
Nat Immunol [Internet]
, vol.11
, pp. 373-384
-
-
Kawai, T.1
Akira, S.2
-
4
-
-
79956300649
-
Toll-like receptors and their crosstalk with other innate receptors in infection and immunity
-
Kawai T, Akira S. Toll-like receptors and their crosstalk with other innate receptors in infection and immunity. Immunity. 2011;34(5):637-50.
-
(2011)
Immunity
, vol.34
, Issue.5
, pp. 637-650
-
-
Kawai, T.1
Akira, S.2
-
5
-
-
0034886143
-
Toll-like receptors: critical proteins linking innate and acquired immunity
-
Akira S, Takeda K, Kaisho T. Toll-like receptors: critical proteins linking innate and acquired immunity. Nat Immunol [Internet]. 2001;2:675-80. Available from: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11477402%5Cn , http://www.nature.com/ni/journal/v2/n8/pdf/ni0801_675.pdf.
-
(2001)
Nat Immunol
, vol.2
, pp. 675-680
-
-
Akira, S.1
Takeda, K.2
Kaisho, T.3
-
6
-
-
34247566510
-
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling
-
O'Neill LA, Bowie AG. The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling. Nat Rev Immunol [Internet]. 2007;7:353-64. Available from: http://www.nature.com/nri/journal/v7/n5/pdf/nri2079.pdf.
-
(2007)
Nat Rev Immunol [Internet]
, vol.7
, pp. 353-364
-
-
O'Neill, L.A.1
Bowie, A.G.2
-
7
-
-
75449093273
-
TIR-containing adaptors in Toll-like receptor signalling
-
Jenkins KA, Mansell A. TIR-containing adaptors in Toll-like receptor signalling. Cytokine. 2010;49(3):237-44.
-
(2010)
Cytokine
, vol.49
, Issue.3
, pp. 237-244
-
-
Jenkins, K.A.1
Mansell, A.2
-
8
-
-
84863229649
-
Both TLR2 and TRIF contribute to interferon-β production during listeria infection
-
Aubry C, Corr SC, Wienerroither S, Goulard C, Jones R, Jamieson AM, et al. Both TLR2 and TRIF contribute to interferon-β production during listeria infection. PLoS One. 2012;7:e33299.
-
(2012)
PLoS One
, vol.7
-
-
Aubry, C.1
Corr, S.C.2
Wienerroither, S.3
Goulard, C.4
Jones, R.5
Jamieson, A.M.6
-
9
-
-
84922311613
-
A role for the adaptor proteins TRAM and TRIF in toll-like receptor 2 signaling
-
Nilsen NJ, Vladimer GI, Stenvik J, Orning MPA, Zeid-Kilani MV, Bugge M, et al. A role for the adaptor proteins TRAM and TRIF in toll-like receptor 2 signaling. J Biol Chem [Internet]. 2015;290:3209-22. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4318996&tool=pmcentrez&rendertype=abstract [cited 2016 Jul 15].
-
(2015)
J Biol Chem [Internet]
, vol.290
, pp. 3209-3222
-
-
Nilsen, N.J.1
Vladimer, G.I.2
Stenvik, J.3
Orning, M.P.A.4
Zeid-Kilani, M.V.5
Bugge, M.6
-
10
-
-
84925465183
-
Structure and function of Toll/interleukin-1 receptor/resistance protein (TIR) domains
-
Ve T, Williams SJ, Kobe B. Structure and function of Toll/interleukin-1 receptor/resistance protein (TIR) domains. Apoptosis. 2015;20:250-61.
-
(2015)
Apoptosis
, vol.20
, pp. 250-261
-
-
Ve, T.1
Williams, S.J.2
Kobe, B.3
-
11
-
-
84905050462
-
Assembly and localization of Toll-like receptor signalling complexes
-
Gay NJ, Symmons MF, Gangloff M, Bryant CE. Assembly and localization of Toll-like receptor signalling complexes. Nat Rev Immunol [Internet]. 2014;14:546-58. Available from: http://www.nature.com/nri/journal/v14/n8/pdf/nri3713.pdf.
-
(2014)
Nat Rev Immunol [Internet]
, vol.14
, pp. 546-558
-
-
Gay, N.J.1
Symmons, M.F.2
Gangloff, M.3
Bryant, C.E.4
-
12
-
-
84927544825
-
Structural biology of innate immunity
-
Yin Q, Fu T-M, Li J, Wu H. Structural biology of innate immunity. Annu Rev Immunol [Internet]. 2015;33:393-416. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4394028&tool=pmcentrez&rendertype=abstract.
-
(2015)
Annu Rev Immunol [Internet]
, vol.33
, pp. 393-416
-
-
Yin, Q.1
Fu, T.-M.2
Li, J.3
Wu, H.4
-
13
-
-
84889776513
-
The TLR signalling adaptor TRIF/TICAM-1 has an N-terminal helical domain with structural similarity to IFIT proteins
-
Obayed Ullah M, Ve T, Mangan M, Alaidarous M, Sweet MJ, Mansell A, et al. The TLR signalling adaptor TRIF/TICAM-1 has an N-terminal helical domain with structural similarity to IFIT proteins. Acta Crystallogr Sect D: Biol Crystallogr. 2013;69:2420-30.
-
(2013)
Acta Crystallogr Sect D: Biol Crystallogr
, vol.69
, pp. 2420-2430
-
-
Obayed Ullah, M.1
Ve, T.2
Mangan, M.3
Alaidarous, M.4
Sweet, M.J.5
Mansell, A.6
-
14
-
-
84896313419
-
The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1
-
Kumeta H, Sakakibara H, Enokizono Y, Ogura K, Horiuchi M, Matsumoto M, et al. The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1. J Biomol NMR. 2014;58:227-30.
-
(2014)
J Biomol NMR
, vol.58
, pp. 227-230
-
-
Kumeta, H.1
Sakakibara, H.2
Enokizono, Y.3
Ogura, K.4
Horiuchi, M.5
Matsumoto, M.6
-
15
-
-
76949087276
-
Direct binding of TRAF2 and TRAF6 to TICAM-1/TRIF adaptor participates in activation of the Toll-like receptor 3/4 pathway
-
Sasai M, Tatematsu M, Oshiumi H, Funami K, Matsumoto M, Hatakeyama S, et al. Direct binding of TRAF2 and TRAF6 to TICAM-1/TRIF adaptor participates in activation of the Toll-like receptor 3/4 pathway. Mol Immunol. 2010;47:1283-91.
-
(2010)
Mol Immunol
, vol.47
, pp. 1283-1291
-
-
Sasai, M.1
Tatematsu, M.2
Oshiumi, H.3
Funami, K.4
Matsumoto, M.5
Hatakeyama, S.6
-
16
-
-
0141959224
-
LPS-TLR4 signaling to IRF-3/7 and NF-kappaB involves the toll adapters TRAM and TRIF
-
Fitzgerald KA, Rowe DC, Barnes BJ, Caffrey DR, Visintin A, Latz E, et al. LPS-TLR4 signaling to IRF-3/7 and NF-kappaB involves the toll adapters TRAM and TRIF. J Exp Med [Internet]. 2003;198(7):1043-55. Available from: http://jem.rupress.org/content/198/7/1043.long.
-
(2003)
J Exp Med [Internet]
, vol.198
, Issue.7
, pp. 1043-1055
-
-
Fitzgerald, K.A.1
Rowe, D.C.2
Barnes, B.J.3
Caffrey, D.R.4
Visintin, A.5
Latz, E.6
-
17
-
-
0041331693
-
Subcellular Localization of Toll-Like Receptor 3 in Human Dendritic Cells
-
Matsumoto M, Funami K, Tanabe M, Oshiumi H, Shingai M, Seto Y, et al. Subcellular Localization of Toll-Like Receptor 3 in Human Dendritic Cells. J Immunol [Internet]. 2003;171:3154-62. Available from: http://www.jimmunol.org/cgi/doi/10.4049/jimmunol.171.6.3154 [cited 2016 Jul 15].
-
(2003)
J Immunol [Internet]
, vol.171
, pp. 3154-3162
-
-
Matsumoto, M.1
Funami, K.2
Tanabe, M.3
Oshiumi, H.4
Shingai, M.5
Seto, Y.6
-
18
-
-
27744526784
-
TLR3 and TLR7 are targeted to the same intracellular compartments by distinct regulatory elements
-
Nishiya T, Kajita E, Miwa S, Defranco AL. TLR3 and TLR7 are targeted to the same intracellular compartments by distinct regulatory elements. J Biol Chem [Internet]. 2005;280:37107-17. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16105838 [cited 2016 Jul 15].
-
(2005)
J Biol Chem [Internet]
, vol.280
, pp. 37107-37117
-
-
Nishiya, T.1
Kajita, E.2
Miwa, S.3
Defranco, A.L.4
-
19
-
-
38449098414
-
Spatiotemporal mobilization of toll/IL-1 receptor domain-containing adaptor molecule-1 in response to dsRNA
-
Funami K, Sasai M, Ohba Y, Oshiumi H, Seya T, Matsumoto M. Spatiotemporal mobilization of toll/IL-1 receptor domain-containing adaptor molecule-1 in response to dsRNA. J Immunol [Internet]. 2007;179:6867-72. Available from: http://www.jimmunol.org/cgi/doi/10.4049/jimmunol.179.10.6867 [cited 2016 Jul 15].
-
(2007)
J Immunol [Internet]
, vol.179
, pp. 6867-6872
-
-
Funami, K.1
Sasai, M.2
Ohba, Y.3
Oshiumi, H.4
Seya, T.5
Matsumoto, M.6
-
20
-
-
84890369104
-
An alanine-to-proline mutation in the BB-loop of TLR3 Toll/IL-1R domain switches signalling adaptor specificity from TRIF to MyD88
-
Verstak B, Arnot CJ, Gay NJ. An alanine-to-proline mutation in the BB-loop of TLR3 Toll/IL-1R domain switches signalling adaptor specificity from TRIF to MyD88. J Immunol [Internet]. 2013;191:6101-9. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24198284.
-
(2013)
J Immunol [Internet]
, vol.191
, pp. 6101-6109
-
-
Verstak, B.1
Arnot, C.J.2
Gay, N.J.3
-
21
-
-
49649087512
-
Homo-oligomerization is essential for toll/interleukin-1 receptor domain-containing adaptor molecule-1-mediated NF-kappaB and interferon regulatory factor-3 activation
-
Funami K, Sasai M, Oshiumi H, Seya T, Matsumoto M. Homo-oligomerization is essential for toll/interleukin-1 receptor domain-containing adaptor molecule-1-mediated NF-kappaB and interferon regulatory factor-3 activation. J Biol Chem. 2008;283:18283-91.
-
(2008)
J Biol Chem
, vol.283
, pp. 18283-18291
-
-
Funami, K.1
Sasai, M.2
Oshiumi, H.3
Seya, T.4
Matsumoto, M.5
-
22
-
-
77953793710
-
A molecular mechanism for Toll-IL-1 receptor domain-containing adaptor molecule-1-mediated IRF-3 activation
-
Tatematsu M, Ishii A, Oshiumi H, Horiuchi M, Inagaki F, Seya T, et al. A molecular mechanism for Toll-IL-1 receptor domain-containing adaptor molecule-1-mediated IRF-3 activation. J Biol Chem. 2010;285:20128-36.
-
(2010)
J Biol Chem
, vol.285
, pp. 20128-20136
-
-
Tatematsu, M.1
Ishii, A.2
Oshiumi, H.3
Horiuchi, M.4
Inagaki, F.5
Seya, T.6
-
23
-
-
84868563621
-
Reliable and robust detection of coevolving protein residues
-
Jeong C-S, Kim D. Reliable and robust detection of coevolving protein residues. Protein Eng Des Sel [Internet]. 2012;25:705-13. Available from: http://www.ncbi.nlm.nih.gov/pubmed/23077274 [cited 2016 May 30].
-
(2012)
Protein Eng Des Sel [Internet]
, vol.25
, pp. 705-713
-
-
Jeong, C.-S.1
Kim, D.2
-
24
-
-
84889776513
-
The TLR signalling adaptor TRIF/TICAM-1 has an N-terminal helical domain with structural similarity to IFIT proteins
-
Ullah MO, Ve T, Mangan M, Alaidarous M, Sweet MJ, Mansell A, et al. The TLR signalling adaptor TRIF/TICAM-1 has an N-terminal helical domain with structural similarity to IFIT proteins. Acta Crystallogr D Biol Crystallogr [Internet]. 2013;69:2420-30. Available from: http://scripts.iucr.org/cgi-bin/paper?S0907444913022385 [cited 2016 Jul 15].
-
(2013)
Acta Crystallogr D Biol Crystallogr [Internet]
, vol.69
, pp. 2420-2430
-
-
Ullah, M.O.1
Ve, T.2
Mangan, M.3
Alaidarous, M.4
Sweet, M.J.5
Mansell, A.6
-
25
-
-
84889642191
-
Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling
-
Enokizono Y, Kumeta H, Funami K, Horiuchi M, Sarmiento J, Yamashita K, et al. Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling. Proc Natl Acad Sci U S A [Internet]. 2013;110:19908-13. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24255114%5Cn , http://www.pnas.org/content/110/49/19908.full.pdf.
-
(2013)
Proc Natl Acad Sci U S A [Internet]
, vol.110
, pp. 19908-19913
-
-
Enokizono, Y.1
Kumeta, H.2
Funami, K.3
Horiuchi, M.4
Sarmiento, J.5
Yamashita, K.6
-
26
-
-
84888086101
-
Recruitment of TLR adapter TRIF to TLR4 signaling complex is mediated by the second helical region of TRIF TIR domain
-
Piao W, Ru LW, Piepenbrink KH, Sundberg EJ, Vogel SN, Toshchakov VY. Recruitment of TLR adapter TRIF to TLR4 signaling complex is mediated by the second helical region of TRIF TIR domain. Proc Natl Acad Sci U S A [Internet]. 2013;110:19036-41. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24194546.
-
(2013)
Proc Natl Acad Sci U S A [Internet]
, vol.110
, pp. 19036-19041
-
-
Piao, W.1
Ru, L.W.2
Piepenbrink, K.H.3
Sundberg, E.J.4
Vogel, S.N.5
Toshchakov, V.Y.6
-
27
-
-
34548751368
-
meta-PPISP: a meta web server for protein-protein interaction site prediction
-
Qin S, Zhou H-X. meta-PPISP: a meta web server for protein-protein interaction site prediction. Bioinformatics [Internet]. 2007;23:3386-7.
-
(2007)
Bioinformatics [Internet]
, vol.23
, pp. 3386-3387
-
-
Qin, S.1
Zhou, H.-X.2
-
28
-
-
33846200437
-
Prediction-based fingerprints of protein - protein interactions
-
Porollo A, Meller J. Prediction-based fingerprints of protein - protein interactions. Proteins. 2007;645:630-45.
-
(2007)
Proteins
, vol.645
, pp. 630-645
-
-
Porollo, A.1
Meller, J.2
-
29
-
-
77955391393
-
The HADDOCK web server for data-driven biomolecular docking
-
de Vries SJ, van Dijk M, Bonvin AMJJ. The HADDOCK web server for data-driven biomolecular docking. Nat Protoc [Internet]. 2010;5:883-97. Available from: http://dx.doi.org/10.1038/nprot.2010.32.
-
(2010)
Nat Protoc [Internet]
, vol.5
, pp. 883-897
-
-
Vries, S.J.1
Dijk, M.2
Bonvin, A.M.J.J.3
-
30
-
-
84942805817
-
PPcheck: a webserver for the quantitative analysis of protein-protein interfaces and prediction of residue hotspots
-
Sukhwal A, Sowdhamini R. PPcheck: a webserver for the quantitative analysis of protein-protein interfaces and prediction of residue hotspots. Bioinform Biol Insights. 2015;9:141-51.
-
(2015)
Bioinform Biol Insights
, vol.9
, pp. 141-151
-
-
Sukhwal, A.1
Sowdhamini, R.2
-
31
-
-
85018461915
-
Identification of side-chain clusters in protein structures by a graph spectral method
-
Kannan N, Vishveshwara S. Identification of side-chain clusters in protein structures by a graph spectral method. 1999.
-
(1999)
-
-
Kannan, N.1
Vishveshwara, S.2
-
32
-
-
28444453011
-
A network representation of protein structures: implications for protein stability
-
Brinda KV, Vishveshwara S. A network representation of protein structures: implications for protein stability. Biophys J [Internet]. 2005;89:4159-70. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1366981&tool=pmcentrez&rendertype=abstract [cited 2016 Jul 25].
-
(2005)
Biophys J [Internet]
, vol.89
, pp. 4159-4170
-
-
Brinda, K.V.1
Vishveshwara, S.2
-
33
-
-
65649089458
-
Intra and inter-molecular communications through protein structure network
-
Vishveshwara S, Ghosh A, Hansia P. Intra and inter-molecular communications through protein structure network. Curr Protein Pept Sci. 2009;10(2):146-60.
-
(2009)
Curr Protein Pept Sci
, vol.10
, Issue.2
, pp. 146-160
-
-
Vishveshwara, S.1
Ghosh, A.2
Hansia, P.3
-
34
-
-
84892909797
-
An automated approach to network features of protein structure ensembles
-
Bhattacharyya M, Bhat CR, Vishveshwara S. An automated approach to network features of protein structure ensembles. Protein Sci [Internet]. 2013;22:1399-416. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3795498&tool=pmcentrez&rendertype=abstract [cited 2016 Jul 25].
-
(2013)
Protein Sci [Internet]
, vol.22
, pp. 1399-1416
-
-
Bhattacharyya, M.1
Bhat, C.R.2
Vishveshwara, S.3
-
35
-
-
35648944297
-
A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis
-
Ghosh A, Vishveshwara S. A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis. Proc Natl Acad Sci U S A. 2007;104:15711-6.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 15711-15716
-
-
Ghosh, A.1
Vishveshwara, S.2
-
36
-
-
84959331956
-
Reconstructing the TIR Side of the Myddosome: a Paradigm for TIR-TIR Interactions
-
Vyncke L, Bovijn C, Pauwels E, Van Acker T, Ruyssinck E, Burg E, et al. Reconstructing the TIR Side of the Myddosome: a Paradigm for TIR-TIR Interactions. Structure [Internet]. 2016;24:437-47. Elsevier Ltd. Available from: http://www.ncbi.nlm.nih.gov/pubmed/26876098 [cited 2016 Jul 15].
-
(2016)
Structure [Internet]
, vol.24
, pp. 437-447
-
-
Vyncke, L.1
Bovijn, C.2
Pauwels, E.3
Acker, T.4
Ruyssinck, E.5
Burg, E.6
-
37
-
-
24144461689
-
Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-??B and IRF3
-
Seth RB, Sun L, Ea CK, Chen ZJ. Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-??B and IRF3. Cell. 2005;122:669-82.
-
(2005)
Cell
, vol.122
, pp. 669-682
-
-
Seth, R.B.1
Sun, L.2
Ea, C.K.3
Chen, Z.J.4
-
38
-
-
84924778328
-
Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation
-
aaa2630
-
Liu S, Cai X, Wu J, Cong Q, Chen X, Li T, et al. Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation. Science [Internet]. 2015;347:aaa2630. Available from: http://science.sciencemag.org/content/347/6227/aaa2630.long.
-
(2015)
Science [Internet]
, vol.347
-
-
Liu, S.1
Cai, X.2
Wu, J.3
Cong, Q.4
Chen, X.5
Li, T.6
-
39
-
-
84946038891
-
Structural Insights into mitochondrial antiviral signaling protein (MAVS)-tumor necrosis factor receptor-associated factor 6 (TRAF6) signaling
-
Shi Z, Zhang Z, Zhang Z, Wang Y, Li C, Wang X, et al. Structural Insights into mitochondrial antiviral signaling protein (MAVS)-tumor necrosis factor receptor-associated factor 6 (TRAF6) signaling. J Biol Chem [Internet]. 2015;290:26811-20. Available from: http://www.ncbi.nlm.nih.gov/pubmed/26385923 [cited 2016 Jul 15].
-
(2015)
J Biol Chem [Internet]
, vol.290
, pp. 26811-26820
-
-
Shi, Z.1
Zhang, Z.2
Zhang, Z.3
Wang, Y.4
Li, C.5
Wang, X.6
-
40
-
-
84955250181
-
Structure determination of helical filaments by solid-state NMR spectroscopy
-
He L, Bardiaux B, Ahmed M, Spehr J, Konig R, Lunsdorf H, et al. Structure determination of helical filaments by solid-state NMR spectroscopy. Proc Natl Acad Sci U S A. 2016;113(3):E272-81.
-
(2016)
Proc Natl Acad Sci U S A
, vol.113
, Issue.3
, pp. E272-E281
-
-
He, L.1
Bardiaux, B.2
Ahmed, M.3
Spehr, J.4
Konig, R.5
Lunsdorf, H.6
-
41
-
-
84896691834
-
Intrinsic disorder in proteins involved in the innate antiviral immunity: Another flexible side of a molecular arms race
-
Xue B, Uversky VN. Intrinsic disorder in proteins involved in the innate antiviral immunity: Another flexible side of a molecular arms race. J Mol Biol. 2014;426:1322-50.
-
(2014)
J Mol Biol
, vol.426
, pp. 1322-1350
-
-
Xue, B.1
Uversky, V.N.2
-
42
-
-
0345832301
-
ClusPro: an automated docking and discrimination method for the prediction of protein complexes
-
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics [Internet]. 2003;20:45-50. Available from: http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bioinformatics/btg371 [cited 2013 Sep 23].
-
(2003)
Bioinformatics [Internet]
, vol.20
, pp. 45-50
-
-
Comeau, S.R.1
Gatchell, D.W.2
Vajda, S.3
Camacho, C.J.4
-
43
-
-
84928523607
-
DOCKSCORE: a webserver for ranking protein-protein docked poses
-
Malhotra S, Mathew OK, Sowdhamini R. DOCKSCORE: a webserver for ranking protein-protein docked poses. BMC Bioinformatics [Internet]. 2015;16:127. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4414291&tool=pmcentrez&rendertype=abstract [cited 2016 Jul 15].
-
(2015)
BMC Bioinformatics [Internet]
, vol.16
, pp. 127
-
-
Malhotra, S.1
Mathew, O.K.2
Sowdhamini, R.3
-
44
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker NA, Sept D, Joseph S, Holst MJ, Mccammon JA. Electrostatics of nanosystems: Application to microtubules and the ribosome. Proc Natl Acad Sci U S A. 2001;98:10037-41.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
Mccammon, J.A.5
-
45
-
-
3242886771
-
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
-
Dolinsky TJ, Nielsen JE, McCammon JA, Baker NA. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res [Internet]. 2004;32:W665-7. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=441519&tool=pmcentrez&rendertype=abstract [cited 2016 Mar 11].
-
(2004)
Nucleic Acids Res [Internet]
, vol.32
, pp. W665-W667
-
-
Dolinsky, T.J.1
Nielsen, J.E.2
McCammon, J.A.3
Baker, N.A.4
-
46
-
-
33846086933
-
Canonical sampling through velocity rescaling
-
Bussi G, Donadio D, Parrinello M. Canonical sampling through velocity rescaling. J Chem Phys [Internet]. 2007;126:14101. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17212484 [cited 2014 Jul 14].
-
(2007)
J Chem Phys [Internet]
, vol.126
, pp. 14101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
47
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, DiNola A, Haak JR. Molecular dynamics with coupling to an external bath. J Chem Phys [Internet]. 1984;81:3684. Available from: http://scitation.aip.org/content/aip/journal/jcp/81/8/10.1063/1.448118 [cited 2014 Jul 10].
-
(1984)
J Chem Phys [Internet]
, vol.81
, pp. 3684
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
48
-
-
0019707626
-
Polymorphic transitions in single crystals: A new molecular dynamics method
-
Parrinello M. Polymorphic transitions in single crystals: A new molecular dynamics method. J Appl Phys [Internet]. 1981;52:7182. Available from: http://scitation.aip.org/content/aip/journal/jap/52/12/10.1063/1.328693 [cited 2014 Jul 10].
-
(1981)
J Appl Phys [Internet]
, vol.52
, pp. 7182
-
-
Parrinello, M.1
-
49
-
-
33846823909
-
Particle mesh Ewald: An N·log(N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L. Particle mesh Ewald: An N·log(N) method for Ewald sums in large systems. J Chem Phys [Internet]. 1993;98:10089. Available from: http://scitation.aip.org/content/aip/journal/jcp/98/12/10.1063/1.464397 [cited 2014 Jul 9].
-
(1993)
J Chem Phys [Internet]
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
|